Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47183 * 60.00274 * 8 6 4 10 10 H 1.48496 * 109.47425 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47216 * 300.00267 * 8 6 4 12 12 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 13 13 O 1.21274 * 120.00042 * 239.72235 * 12 2 1 14 14 N 1.34777 * 119.99766 * 59.99771 * 12 2 1 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 2 16 16 H 1.09004 * 110.01561 * 34.30483 * 15 14 12 17 17 C 1.53874 * 110.03461 * 272.91424 * 15 14 12 18 18 C 1.54264 * 106.59558 * 240.71231 * 17 15 14 19 19 C 1.54888 * 104.20012 * 23.60801 * 18 17 15 20 20 C 1.54262 * 110.03613 * 155.69189 * 15 14 12 21 21 H 1.09002 * 110.49072 * 214.35931 * 20 15 14 22 22 C 1.53010 * 110.48651 * 337.00171 * 20 15 14 23 23 O 1.42899 * 109.46973 * 184.99657 * 22 20 15 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 26 26 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 27 27 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00043 * 0.02562 * 14 12 2 29 29 H 1.08999 * 110.03380 * 359.97438 * 17 15 14 30 30 H 1.09001 * 110.03332 * 121.42681 * 17 15 14 31 31 H 1.09006 * 110.48331 * 142.29013 * 18 17 15 32 32 H 1.09001 * 110.48490 * 264.92937 * 18 17 15 33 33 H 1.09001 * 110.75367 * 80.37199 * 19 18 17 34 34 H 1.08990 * 110.75859 * 203.55628 * 19 18 17 35 35 H 1.08994 * 109.46490 * 304.99877 * 22 20 15 36 36 H 1.09003 * 109.46857 * 64.99646 * 22 20 15 37 37 H 0.96700 * 113.99126 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3214 -1.1205 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4208 5.2204 11 1 1.8259 -2.5204 4.0076 12 6 2.0323 -0.7104 -1.2305 13 8 2.7337 -1.6935 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 1 2.2477 -2.0133 -3.4671 17 6 3.5844 -0.4034 -4.0386 18 6 3.4470 0.1918 -5.4551 19 6 1.9407 0.5300 -5.5807 20 6 1.2618 -0.6535 -4.8449 21 1 1.1994 -1.5239 -5.4981 22 6 -0.1299 -0.2513 -4.3521 23 8 -1.0071 -0.1042 -5.4706 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 0.7089 1.1611 3.4844 28 1 1.1493 0.5389 -2.5436 29 1 3.8947 0.3709 -3.3370 30 1 4.3106 -1.2163 -4.0439 31 1 4.0500 1.0950 -5.5495 32 1 3.7371 -0.5421 -6.2070 33 1 1.7142 1.4741 -5.0852 34 1 1.6380 0.5625 -6.6272 35 1 -0.5163 -1.0228 -3.6862 36 1 -0.0655 0.6944 -3.8140 37 1 -1.9090 0.1500 -5.2321 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597751669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -106.161221 kcal Electronic energy + Delta-G solvation = -18042.912602 eV Core-core repulsion = 15205.369186 eV Total energy + Delta-G solvation = -2837.543416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72525 -37.75890 -36.15806 -33.72301 -32.93101 -30.44824 -30.01633 -27.39570 -25.14041 -24.38462 -22.66882 -20.55672 -19.81126 -19.18121 -17.46135 -16.28906 -16.01482 -15.70720 -15.05367 -14.69271 -14.51288 -14.32227 -13.70087 -13.38084 -13.00958 -12.53954 -12.44489 -11.68757 -11.47415 -11.21222 -11.07117 -10.99706 -10.89381 -10.74113 -10.68691 -10.65811 -10.53095 -10.24889 -9.95128 -9.91360 -8.98654 -8.59708 -8.41733 -8.31068 -6.02884 -4.05889 3.36503 3.38825 3.44400 3.74307 3.86834 4.13273 4.48191 4.61114 4.65414 4.97454 5.24313 5.30328 5.39392 5.43501 5.58122 5.63083 5.66665 5.77789 5.85972 5.98968 6.06232 6.11713 6.26669 6.37883 6.48723 6.59521 6.80823 6.91842 7.15660 7.47269 7.54878 7.74998 7.99611 8.15523 8.46412 9.03063 9.26950 9.59793 11.04769 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.005960 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.403923 B = 4696.950404 C = 5177.363223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.545 6.545 14 N -0.743 5.743 15 C 0.148 3.852 16 H 0.087 0.913 17 C -0.134 4.134 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.098 4.098 21 H 0.089 0.911 22 C 0.083 3.917 23 O -0.576 6.576 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 1.493 -14.715 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.420 6.420 14 N -0.399 5.399 15 C 0.042 3.958 16 H 0.105 0.895 17 C -0.173 4.173 18 C -0.162 4.162 19 C -0.151 4.151 20 C -0.117 4.117 21 H 0.107 0.893 22 C 0.006 3.994 23 O -0.381 6.381 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.229 0.771 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.947 0.704 -14.781 14.828 hybrid contribution -0.462 0.140 1.145 1.242 sum -1.410 0.843 -13.637 13.735 Atomic orbital electron populations 1.21739 0.96685 0.99735 1.00785 1.18868 0.94063 0.96816 0.89506 0.93092 1.21111 1.30950 1.12795 0.89026 0.90847 1.24951 0.95130 0.95077 0.99110 1.69860 1.37133 1.23130 1.23616 0.86506 0.79285 0.79708 0.81628 1.20201 1.21391 1.20219 1.21972 0.78438 0.84169 0.84537 1.90523 1.37662 1.27115 1.86749 1.46544 1.55464 1.32403 1.05454 1.21400 0.92101 0.98116 0.84201 0.89500 1.22610 0.97221 1.00989 0.96479 1.22373 0.96394 1.00485 0.96996 1.22526 0.94609 0.97531 1.00406 1.22254 0.92781 0.99696 0.96988 0.89289 1.22174 0.89811 0.99695 0.87759 1.86434 1.24505 1.92772 1.34386 0.95018 0.88844 0.97162 0.92932 0.77094 0.90946 0.91380 0.91707 0.91736 0.91497 0.91325 0.92969 0.93392 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.07 2.20 6.75 -52.48 -0.35 1.85 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.70 7.14 -10.98 -0.08 11.62 16 13 O -0.54 -14.13 15.13 5.56 0.08 -14.04 16 14 N -0.74 -12.70 4.25 -52.72 -0.22 -12.93 16 15 C 0.15 2.21 3.10 -66.82 -0.21 2.00 16 16 H 0.09 1.46 7.59 -51.93 -0.39 1.07 16 17 C -0.13 -1.86 6.59 -25.61 -0.17 -2.03 16 18 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 19 C -0.11 -1.25 6.26 -24.67 -0.15 -1.41 16 20 C -0.10 -1.21 3.09 -88.89 -0.27 -1.48 16 21 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 22 C 0.08 0.99 5.51 37.16 0.20 1.20 16 23 O -0.58 -6.41 13.58 -35.23 -0.48 -6.89 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 26 H 0.01 0.18 7.56 -51.93 -0.39 -0.22 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.39 5.94 5.95 -40.82 -0.24 5.69 16 29 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.54 6.41 -51.93 -0.33 0.21 16 37 H 0.38 2.63 9.12 45.56 0.42 3.04 16 LS Contribution 297.61 15.07 4.48 4.48 Total: -1.00 -31.55 297.61 -6.63 -38.18 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.96 Total: 5.67 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.15 Total: -6.81 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.46 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.39 Total: -20.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.55 -6.63 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597751669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.980 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds