Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.09003 * 110.01591 * 305.70120 * 16 15 14 18 18 C 1.53876 * 110.03730 * 67.08928 * 16 15 14 19 19 C 1.54263 * 106.60059 * 119.28382 * 18 16 15 20 20 C 1.54890 * 104.19559 * 23.61303 * 19 18 16 21 21 C 1.54268 * 110.03494 * 184.30835 * 16 15 14 22 22 H 1.09001 * 110.48741 * 335.78561 * 21 16 15 23 23 O 1.42899 * 110.48606 * 98.42672 * 21 16 15 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 29 29 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 30 30 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 31 31 H 1.08997 * 110.03761 * 238.57568 * 18 16 15 32 32 H 1.09003 * 110.02539 * 359.95402 * 18 16 15 33 33 H 1.09001 * 110.48969 * 142.29007 * 19 18 16 34 34 H 1.09008 * 110.49199 * 264.80647 * 19 18 16 35 35 H 1.08999 * 110.75809 * 80.37234 * 20 19 18 36 36 H 1.08997 * 110.76013 * 203.74454 * 20 19 18 37 37 H 0.96699 * 114.00322 * 180.02562 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 1 0.6000 -0.1239 -4.8596 18 6 2.3324 1.1732 -5.0054 19 6 3.1200 1.1938 -6.3316 20 6 2.4318 0.1105 -7.1989 21 6 2.1009 -0.9963 -6.1660 22 1 2.9812 -1.6073 -5.9666 23 8 1.0213 -1.8089 -6.6309 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8912 -0.5369 4.4374 28 1 1.1493 0.5391 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8308 -1.9681 -3.6508 31 1 1.5614 1.9436 -5.0169 32 1 3.0088 1.3348 -4.1660 33 1 3.0401 2.1710 -6.8077 34 1 4.1656 0.9391 -6.1585 35 1 1.5203 0.5000 -7.6521 36 1 3.1140 -0.2645 -7.9618 37 1 1.2277 -2.3204 -7.4251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597758724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = -103.077178 kcal Electronic energy + Delta-G solvation = -17617.585934 eV Core-core repulsion = 14780.176252 eV Total energy + Delta-G solvation = -2837.409682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55991 -38.46653 -35.56793 -33.89027 -33.76658 -31.29838 -29.59529 -27.86363 -25.09270 -24.75315 -22.31288 -21.16652 -19.95214 -19.20886 -17.80686 -16.71112 -16.18123 -15.42717 -15.28894 -15.02092 -14.49504 -14.32319 -13.91310 -13.37892 -13.19605 -12.77683 -12.59468 -12.36180 -12.24236 -11.67387 -11.50435 -11.36586 -11.06611 -10.87979 -10.84401 -10.62766 -10.54113 -10.25549 -10.10406 -9.60333 -9.05932 -8.65186 -8.55033 -8.46755 -6.01649 -4.01559 3.25966 3.33184 3.38709 3.64782 3.70375 4.02026 4.34253 4.40802 4.44154 4.71948 5.01332 5.09069 5.18689 5.27776 5.31618 5.39021 5.45439 5.60728 5.71179 5.80577 5.88909 5.92536 6.02620 6.11330 6.15924 6.22038 6.37625 6.49548 6.76441 7.02388 7.20715 7.44662 7.58963 8.18520 8.59866 9.14170 9.20604 9.57647 11.11453 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042794 B = 0.005013 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.143372 B = 5584.207237 C = 5770.262645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.533 6.533 14 N -0.746 5.746 15 C 0.129 3.871 16 C -0.097 4.097 17 H 0.089 0.911 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.156 4.156 21 C 0.104 3.896 22 H 0.067 0.933 23 O -0.563 6.563 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.394 0.606 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 5.308 -21.813 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.315 3.685 13 O -0.407 6.407 14 N -0.401 5.401 15 C 0.004 3.996 16 C -0.116 4.116 17 H 0.107 0.893 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.194 4.194 21 C 0.045 3.955 22 H 0.085 0.915 23 O -0.368 6.368 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.413 4.822 -20.980 21.573 hybrid contribution -0.627 0.969 -0.332 1.201 sum -2.040 5.791 -21.312 22.178 Atomic orbital electron populations 1.22113 0.97369 1.01516 0.99165 1.19312 0.93175 0.97523 0.92691 0.93087 1.20955 1.31899 1.14132 0.87259 0.88904 1.24988 0.95867 0.96580 0.95762 1.69888 1.45639 1.40166 0.97844 0.86901 0.80710 0.83837 0.76988 1.20548 1.22361 1.19289 1.21257 0.78939 0.84303 0.83970 1.90579 1.37277 1.26302 1.86551 1.46226 1.55600 1.32647 1.05642 1.21271 0.98754 0.96196 0.83337 1.21942 1.01952 0.94651 0.93066 0.89312 1.22245 0.99750 0.95882 0.98225 1.22257 0.99459 0.98786 0.95502 1.23198 1.01074 0.97045 0.98073 1.22672 0.89094 0.90726 0.93000 0.91526 1.86542 1.39704 1.62021 1.48535 0.93334 0.94853 0.92371 0.92608 0.77223 0.92026 0.91852 0.91304 0.90565 0.91392 0.91302 0.90578 0.91395 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.57 37.16 0.32 -2.71 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.17 7.21 -51.93 -0.37 0.80 16 4 C -0.50 -14.86 8.96 -34.44 -0.31 -15.17 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 8 Si 0.89 21.61 24.37 -169.99 -4.14 17.46 16 9 H -0.28 -6.59 6.86 56.52 0.39 -6.20 16 10 H -0.30 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 12 C 0.53 11.84 7.15 -10.98 -0.08 11.77 16 13 O -0.53 -14.19 15.46 5.56 0.09 -14.10 16 14 N -0.75 -12.51 5.21 -60.30 -0.31 -12.82 16 15 C 0.13 1.89 4.69 -4.05 -0.02 1.87 16 16 C -0.10 -1.08 2.73 -89.50 -0.24 -1.33 16 17 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 18 C -0.12 -1.18 6.16 -25.61 -0.16 -1.34 16 19 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 20 C -0.16 -1.20 6.62 -24.70 -0.16 -1.37 16 21 C 0.10 1.01 3.77 -25.03 -0.09 0.91 16 22 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 23 O -0.56 -5.70 13.37 -35.23 -0.47 -6.17 16 24 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 25 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.39 5.53 7.75 -40.82 -0.32 5.22 16 29 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.81 7.59 -51.93 -0.39 0.42 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 2.11 9.12 45.56 0.42 2.53 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -34.90 294.87 -5.84 -40.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.99 Total: 4.69 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.22 Total: -6.92 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.46 Total: -40.15 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.39 Total: -20.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.90 -5.84 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.339 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds