Wall clock time and date at job start Mon Mar 30 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 N 1.46498 * 109.47576 * 120.00138 * 2 1 3 5 5 C 1.34775 * 120.00277 * 277.77259 * 4 2 1 6 6 O 1.21287 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00017 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46854 * 299.99562 * 7 5 4 9 9 C 1.53000 * 109.47442 * 59.99811 * 7 5 4 10 10 C 1.50705 * 109.47024 * 179.97438 * 7 5 4 11 11 H 1.07997 * 119.99807 * 0.02562 * 10 7 5 12 12 C 1.37875 * 120.00163 * 179.97438 * 10 7 5 13 13 N 1.31515 * 119.99796 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00191 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47215 * 59.99806 * 14 12 10 16 16 H 1.48503 * 109.46983 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46973 * 299.99685 * 14 12 10 18 18 C 1.52999 * 109.46984 * 240.00744 * 2 1 3 19 19 C 1.52997 * 115.55430 * 65.20836 * 18 2 1 20 20 O 1.42898 * 109.46881 * 65.11820 * 19 18 2 21 21 C 1.53004 * 117.49676 * 210.88228 * 18 2 1 22 22 C 1.53005 * 117.49584 * 279.54094 * 18 2 1 23 23 H 1.08997 * 109.47204 * 59.99736 * 1 2 3 24 24 H 1.09003 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46882 * 299.99577 * 1 2 3 26 26 H 0.97000 * 119.99683 * 97.76699 * 4 2 1 27 27 H 1.09000 * 109.46807 * 59.99840 * 9 7 5 28 28 H 1.08997 * 109.47060 * 179.97438 * 9 7 5 29 29 H 1.09000 * 109.46627 * 299.99862 * 9 7 5 30 30 H 0.97000 * 120.00154 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47185 * 305.11814 * 19 18 2 32 32 H 1.08997 * 109.47263 * 185.11831 * 19 18 2 33 33 H 0.96706 * 114.00262 * 180.02562 * 20 19 18 34 34 H 1.09003 * 117.49392 * 214.99911 * 21 18 2 35 35 H 1.09000 * 117.49805 * 0.02562 * 21 18 2 36 36 H 1.09005 * 117.49812 * 359.97435 * 22 18 2 37 37 H 1.08993 * 117.49701 * 145.00086 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.0943 -0.0331 2.3702 6 8 1.7587 1.1305 2.4364 7 6 2.5962 -0.7438 3.6006 8 1 1.9511 -1.5953 3.8169 9 6 4.0250 -1.2348 3.3590 10 6 2.5833 0.2067 4.7701 11 1 2.2450 1.2235 4.6357 12 6 3.0023 -0.2220 6.0117 13 7 3.4137 -1.4604 6.1753 14 14 2.9855 0.9559 7.4613 15 1 1.5989 1.4329 7.6956 16 1 3.4802 0.2557 8.6738 17 1 3.8649 2.1158 7.1668 18 6 2.0400 -0.7211 -1.2493 19 6 1.7143 -0.0433 -2.5817 20 8 2.3919 1.2127 -2.6554 21 6 3.3736 -1.4633 -1.1417 22 6 2.0633 -2.2507 -1.2220 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.2872 -1.6211 1.1431 27 1 4.6701 -0.3832 3.1427 28 1 4.3881 -1.7484 4.2492 29 1 4.0347 -1.9221 2.5131 30 1 3.7081 -1.7622 7.0489 31 1 0.6388 0.1193 -2.6534 32 1 2.0408 -0.6810 -3.4032 33 1 2.2305 1.6992 -3.4754 34 1 4.0189 -1.4686 -2.0202 35 1 3.8874 -1.4382 -0.1807 36 1 1.7158 -2.7432 -0.3138 37 1 1.8467 -2.7740 -2.1533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598039792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:49 Heat of formation + Delta-G solvation = -71.057927 kcal Electronic energy + Delta-G solvation = -17993.634306 eV Core-core repulsion = 15157.613083 eV Total energy + Delta-G solvation = -2836.021223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75637 -37.96283 -36.02110 -33.71905 -33.34728 -30.95096 -29.49353 -26.76428 -25.08165 -23.98284 -22.42085 -21.99202 -19.36014 -18.84187 -17.45191 -16.63613 -16.15572 -15.51297 -15.05984 -14.51022 -14.27496 -13.96398 -13.55357 -13.24632 -12.93998 -12.66887 -12.38616 -12.04653 -11.60605 -11.48964 -11.30624 -10.96538 -10.90965 -10.67487 -10.63909 -10.47033 -10.21513 -10.01691 -9.89522 -9.78982 -8.92957 -8.53030 -8.33039 -8.25178 -5.98122 -4.00833 3.40038 3.41922 3.47848 3.52335 3.83728 3.95425 4.25443 4.51829 4.63927 4.74725 4.93160 5.08013 5.24144 5.35034 5.46952 5.58307 5.65423 5.76618 5.79583 5.94724 6.04448 6.13245 6.16758 6.46560 6.55896 6.67455 6.88411 6.98784 7.22957 7.51772 7.53470 7.80993 8.05045 8.21841 8.53474 9.08099 9.34895 9.64589 11.09537 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040044 B = 0.005684 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.063207 B = 4925.200121 C = 5211.612326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.182 3.818 3 H 0.090 0.910 4 N -0.744 5.744 5 C 0.520 3.480 6 O -0.545 6.545 7 C 0.029 3.971 8 H 0.051 0.949 9 C -0.132 4.132 10 C -0.499 4.499 11 H 0.073 0.927 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.134 4.134 19 C 0.118 3.882 20 O -0.565 6.565 21 C -0.164 4.164 22 C -0.170 4.170 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.392 0.608 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.376 0.624 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -2.726 -17.418 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.108 0.892 4 N -0.399 5.399 5 C 0.310 3.690 6 O -0.421 6.421 7 C 0.008 3.992 8 H 0.068 0.932 9 C -0.190 4.190 10 C -0.538 4.538 11 H 0.091 0.909 12 C -0.143 4.143 13 N -0.538 5.538 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.134 4.134 19 C 0.040 3.960 20 O -0.370 6.370 21 C -0.201 4.201 22 C -0.207 4.207 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.227 0.773 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.223 0.777 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.692 -2.169 -16.603 16.959 hybrid contribution -0.084 0.176 0.112 0.225 sum -2.776 -1.992 -16.491 16.841 Atomic orbital electron populations 1.22127 0.95766 1.01604 1.02064 1.20083 0.93176 0.97025 0.82049 0.89175 1.46467 1.69179 1.15262 1.08971 1.21927 0.75417 0.87255 0.84410 1.90525 1.48567 1.17638 1.85346 1.18864 0.94474 0.96609 0.89267 0.93170 1.21738 0.97793 0.98801 1.00626 1.21117 1.42546 0.98222 0.91870 0.90853 1.24949 0.95218 0.95313 0.98804 1.69865 1.44543 1.15775 1.23574 0.86508 0.78525 0.80889 0.81212 1.20232 1.21418 1.20221 1.21647 1.02864 0.93278 0.95642 1.21546 0.95545 0.84821 0.94104 1.86579 1.73299 1.33134 1.43941 1.23074 0.90460 1.02596 1.03946 1.23069 1.01922 0.92206 1.03501 0.92550 0.92818 0.91708 0.77266 0.94990 0.88876 0.97081 0.92983 0.92940 0.93596 0.77721 0.88753 0.87817 0.88089 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.28 37.16 0.34 -1.97 16 2 C 0.18 2.94 2.57 -67.93 -0.17 2.77 16 3 H 0.09 1.75 7.63 -51.93 -0.40 1.36 16 4 N -0.74 -13.56 4.25 -53.81 -0.23 -13.78 16 5 C 0.52 12.27 7.08 -10.99 -0.08 12.19 16 6 O -0.55 -14.71 15.07 5.55 0.08 -14.62 16 7 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 8 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 9 C -0.13 -3.10 8.87 37.16 0.33 -2.77 16 10 C -0.50 -14.50 8.37 -34.44 -0.29 -14.78 16 11 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 12 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 13 N -0.90 -25.59 11.32 55.43 0.63 -24.96 16 14 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.13 -1.68 1.77 -154.51 -0.27 -1.95 16 19 C 0.12 1.21 6.71 37.16 0.25 1.46 16 20 O -0.56 -6.48 13.57 -35.23 -0.48 -6.95 16 21 C -0.16 -1.99 9.49 -26.69 -0.25 -2.25 16 22 C -0.17 -1.79 9.47 -26.69 -0.25 -2.04 16 23 H 0.06 0.70 6.99 -51.93 -0.36 0.34 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.13 8.05 -51.92 -0.42 0.71 16 26 H 0.39 6.31 5.38 -40.82 -0.22 6.09 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 0.48 6.98 -51.93 -0.36 0.12 16 32 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.38 2.36 9.12 45.56 0.42 2.77 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.44 7.10 -51.93 -0.37 1.07 16 36 H 0.10 1.09 6.95 -51.93 -0.36 0.73 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -33.03 302.32 -6.00 -39.03 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.80 Total: 6.82 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.74 Total: -7.31 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.40 Total: -38.75 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.39 Total: -21.58 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.03 -6.00 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598039792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.026 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds