Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46605 * 2 1 4 4 C 1.42896 * 113.99797 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.85287 * 341.20047 * 4 3 2 6 6 C 1.53784 * 113.61465 * 112.50751 * 4 3 2 7 7 C 1.53776 * 87.08619 * 139.98048 * 6 4 3 8 8 H 1.08994 * 113.69114 * 220.00927 * 7 6 4 9 9 N 1.46503 * 113.61274 * 89.11178 * 7 6 4 10 10 C 1.34779 * 119.99606 * 107.50751 * 9 7 6 11 11 O 1.21281 * 120.00062 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 7 13 13 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 14 14 C 1.53006 * 109.47184 * 59.99469 * 12 10 9 15 15 C 1.50697 * 109.47576 * 179.97438 * 12 10 9 16 16 H 1.08002 * 119.99362 * 359.97438 * 15 12 10 17 17 C 1.37867 * 120.00258 * 179.97438 * 15 12 10 18 18 N 1.31511 * 120.00203 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 120.00057 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.46873 * 60.00018 * 19 17 15 21 21 H 1.48503 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47271 * 299.99819 * 19 17 15 23 23 C 1.53783 * 87.08065 * 334.56890 * 7 6 4 24 24 H 1.08997 * 109.46629 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47384 * 299.99596 * 1 2 3 26 26 H 1.08999 * 109.47298 * 60.00286 * 1 2 3 27 27 H 1.08997 * 109.46934 * 240.00379 * 2 1 3 28 28 H 1.08999 * 109.47298 * 119.99714 * 2 1 3 29 29 H 1.09007 * 113.61386 * 25.43055 * 6 4 3 30 30 H 1.09002 * 113.61244 * 254.53461 * 6 4 3 31 31 H 0.96991 * 120.00647 * 287.50637 * 9 7 6 32 32 H 1.09001 * 109.46998 * 60.00038 * 14 12 10 33 33 H 1.09000 * 109.47050 * 180.02562 * 14 12 10 34 34 H 1.09001 * 109.46801 * 300.00442 * 14 12 10 35 35 H 0.97006 * 120.00645 * 180.02562 * 18 17 15 36 36 H 1.08997 * 113.61721 * 139.97693 * 23 7 6 37 37 H 1.08998 * 113.61416 * 270.79884 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9278 0.5458 0.3246 6 6 4.0028 2.0464 -1.3010 7 6 4.9898 2.8316 -0.4212 8 1 5.1628 3.8527 -0.7611 9 7 6.2319 2.1067 -0.1420 10 6 7.3812 2.4856 -0.7354 11 8 7.3870 3.4263 -1.5008 12 6 8.6588 1.7396 -0.4488 13 1 8.8814 1.7965 0.6168 14 6 8.4968 0.2743 -0.8585 15 6 9.7881 2.3578 -1.2320 16 1 9.5994 3.2058 -1.8736 17 6 11.0621 1.8408 -1.1296 18 7 11.2920 0.8085 -0.3479 19 14 12.4618 2.6067 -2.1011 20 1 12.6189 4.0292 -1.7050 21 1 13.7211 1.8724 -1.8175 22 1 12.1583 2.5277 -3.5525 23 6 3.9482 2.7255 0.7052 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2992 2.6804 -1.8406 30 1 4.4821 1.3049 -1.9402 31 1 6.2273 1.3541 0.4698 32 1 8.2741 0.2175 -1.9240 33 1 9.4208 -0.2653 -0.6507 34 1 7.6799 -0.1730 -0.2922 35 1 12.1884 0.4450 -0.2755 36 1 4.3835 2.5321 1.6856 37 1 3.2306 3.5458 0.7150 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598064607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = -75.147724 kcal Electronic energy + Delta-G solvation = -17396.757483 eV Core-core repulsion = 14560.558913 eV Total energy + Delta-G solvation = -2836.198570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93144 -38.25018 -36.38407 -33.72444 -32.46042 -31.00882 -30.08124 -25.69907 -25.13769 -24.45104 -22.94501 -22.47308 -19.70134 -19.22880 -17.15098 -16.27654 -15.98730 -15.72024 -15.31961 -15.10832 -14.37271 -14.07084 -13.46144 -13.10880 -12.95723 -12.73029 -12.50480 -12.35244 -12.01528 -11.76369 -11.47826 -11.20180 -10.99612 -10.81571 -10.71058 -10.68307 -10.37951 -10.24845 -9.94937 -9.46926 -8.98426 -8.61330 -8.45466 -8.31392 -6.02613 -4.05766 3.37108 3.39284 3.44840 3.59434 3.69559 3.84506 4.48016 4.58294 4.59325 4.86042 4.88456 5.02648 5.08544 5.19216 5.30903 5.36945 5.64170 5.69550 5.77547 5.80579 5.87921 5.99911 6.06511 6.09201 6.38574 6.60774 6.82030 6.92093 7.08103 7.22734 7.47487 7.75487 7.99371 8.14910 8.45221 9.03120 9.24268 9.59902 11.05033 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053023 B = 0.004397 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.950323 B = 6366.523680 C = 6623.140890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.063 3.937 5 H 0.086 0.914 6 C -0.168 4.168 7 C 0.125 3.875 8 H 0.104 0.896 9 N -0.731 5.731 10 C 0.522 3.478 11 O -0.544 6.544 12 C 0.029 3.971 13 H 0.053 0.947 14 C -0.132 4.132 15 C -0.502 4.502 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.898 5.898 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.395 0.605 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.011 0.989 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.102 -3.170 3.235 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.005 3.995 5 H 0.104 0.896 6 C -0.207 4.207 7 C 0.018 3.982 8 H 0.122 0.878 9 N -0.384 5.384 10 C 0.312 3.688 11 O -0.419 6.419 12 C 0.008 3.992 13 H 0.070 0.930 14 C -0.190 4.190 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.229 0.771 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.034 -2.427 2.721 17.420 hybrid contribution 0.851 -0.364 -0.177 0.942 sum -16.183 -2.791 2.544 16.618 Atomic orbital electron populations 1.21745 0.93996 1.02083 1.03002 1.22493 0.95411 0.84274 1.00038 1.87931 1.21005 1.26032 1.94651 1.23804 0.80596 0.97890 0.97211 0.89621 1.23976 0.98634 1.00778 0.97330 1.21452 0.83768 0.97660 0.95322 0.87758 1.46054 1.07391 1.35439 1.49508 1.22016 0.85068 0.83615 0.78140 1.90528 1.86251 1.29412 1.35702 1.18875 0.88393 0.92749 0.99166 0.92959 1.21741 1.01313 0.97536 0.98373 1.21114 0.91345 1.15220 1.26322 0.90814 1.24946 0.98735 0.95033 0.95516 1.69859 1.21520 1.23773 1.38560 0.86501 0.80776 0.79336 0.80499 1.20176 1.21392 1.20191 1.23611 0.97781 0.98163 0.98617 0.91285 0.91958 0.91921 0.93402 0.93463 0.88867 0.90878 0.77112 0.95005 0.88837 0.97027 0.92915 0.90520 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.05 0.52 6.50 37.16 0.24 0.76 16 3 O -0.38 -4.57 10.35 -35.23 -0.36 -4.94 16 4 C 0.06 0.75 4.19 -25.91 -0.11 0.64 16 5 H 0.09 0.94 7.87 -51.93 -0.41 0.54 16 6 C -0.17 -2.26 7.71 -25.92 -0.20 -2.46 16 7 C 0.12 1.87 4.32 -67.12 -0.29 1.58 16 8 H 0.10 1.75 7.46 -51.93 -0.39 1.36 16 9 N -0.73 -12.60 5.16 -53.02 -0.27 -12.87 16 10 C 0.52 11.88 7.15 -10.99 -0.08 11.80 16 11 O -0.54 -14.24 15.06 5.56 0.08 -14.16 16 12 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 13 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 15 C -0.50 -14.30 8.37 -34.45 -0.29 -14.59 16 16 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -25.21 11.32 55.43 0.63 -24.58 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.14 -1.71 7.66 -25.92 -0.20 -1.91 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.39 5.86 8.12 -40.82 -0.33 5.53 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 34 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -31.17 307.45 -6.84 -38.01 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.98 Total: 2.66 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.55 Total: -5.64 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.35 Total: -37.45 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.28 Total: -19.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.17 -6.84 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598064607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.141 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds