Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09011 * 109.46717 * 2 1 4 4 C 1.50700 * 109.47320 * 240.00229 * 2 1 3 5 5 H 1.07997 * 119.99445 * 240.00132 * 4 2 1 6 6 C 1.37873 * 119.99927 * 59.99750 * 4 2 1 7 7 N 1.31513 * 120.00266 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46886 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47250 * 119.99920 * 8 6 4 11 11 H 1.48505 * 109.46672 * 239.99893 * 8 6 4 12 12 C 1.50700 * 109.47305 * 119.99758 * 2 1 3 13 13 O 1.21281 * 119.99800 * 25.19029 * 12 2 1 14 14 N 1.34772 * 120.00242 * 205.19342 * 12 2 1 15 15 C 1.47429 * 125.64728 * 5.40871 * 14 12 2 16 16 C 1.54911 * 104.83210 * 155.83459 * 15 14 12 17 17 C 1.55159 * 101.58220 * 37.00815 * 16 15 14 18 18 C 1.47022 * 125.65027 * 185.36201 * 14 12 2 19 19 H 1.09002 * 109.88206 * 300.67289 * 18 14 12 20 20 C 1.53005 * 109.87952 * 61.67633 * 18 14 12 21 21 H 1.08995 * 109.47561 * 301.04311 * 20 18 14 22 22 C 1.52992 * 109.47229 * 181.03822 * 20 18 14 23 23 O 1.42903 * 109.46901 * 61.04333 * 20 18 14 24 24 H 1.09001 * 109.46883 * 184.70314 * 1 2 3 25 25 H 1.09003 * 109.47116 * 304.70190 * 1 2 3 26 26 H 1.09003 * 109.47043 * 64.70220 * 1 2 3 27 27 H 0.97006 * 119.99724 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.36313 * 274.66968 * 15 14 12 29 29 H 1.08999 * 110.36629 * 36.88518 * 15 14 12 30 30 H 1.09000 * 111.00272 * 155.07859 * 16 15 14 31 31 H 1.08996 * 111.00577 * 278.89692 * 16 15 14 32 32 H 1.08992 * 110.72129 * 206.13760 * 17 16 15 33 33 H 1.09002 * 110.72258 * 82.85768 * 17 16 15 34 34 H 1.09000 * 109.47033 * 60.00234 * 22 20 18 35 35 H 1.08995 * 109.47417 * 180.02562 * 22 20 18 36 36 H 1.09005 * 109.47258 * 300.00690 * 22 20 18 37 37 H 0.96703 * 114.00171 * 65.36478 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6037 10 1 1.1663 -1.5867 -4.8161 11 1 3.1467 -0.1871 -4.8164 12 6 2.0324 -0.7103 1.2305 13 8 1.3385 -1.5418 1.7765 14 7 3.2528 -0.4217 1.7242 15 6 4.1499 0.6395 1.2317 16 6 5.0645 0.9761 2.4359 17 6 5.2723 -0.4246 3.0703 18 6 3.9095 -1.1123 2.8438 19 1 3.2963 -1.0298 3.7412 20 6 4.1223 -2.5863 2.4930 21 1 3.1602 -3.0513 2.2784 22 6 4.7823 -3.3013 3.6736 23 8 4.9661 -2.6854 1.3440 24 1 -0.3633 -1.0242 0.0843 25 1 -0.3633 0.5851 0.8449 26 1 -0.3633 0.4392 -0.9291 27 1 0.7088 1.1612 -3.4845 28 1 4.7445 0.2749 0.3940 29 1 3.5737 1.5156 0.9343 30 1 6.0122 1.3977 2.1008 31 1 4.5634 1.6498 3.1308 32 1 5.4880 -0.3375 4.1351 33 1 6.0674 -0.9661 2.5577 34 1 4.1387 -3.2257 4.5500 35 1 4.9343 -4.3513 3.4236 36 1 5.7445 -2.8363 3.8882 37 1 5.8672 -2.3655 1.4889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598236531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -119.765847 kcal Electronic energy + Delta-G solvation = -18647.494557 eV Core-core repulsion = 15809.361200 eV Total energy + Delta-G solvation = -2838.133357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31116 -39.11440 -37.13328 -35.82350 -32.97202 -32.22322 -31.97005 -28.77778 -27.31799 -25.66083 -23.94743 -23.04436 -21.22171 -19.96997 -18.58238 -18.21717 -17.58691 -17.05915 -16.38466 -16.31503 -15.79542 -15.18181 -14.75081 -14.38192 -14.28906 -13.99315 -13.59125 -13.36929 -13.12777 -12.88580 -12.81416 -12.78769 -12.67876 -12.54674 -12.28492 -12.17908 -11.91268 -11.74326 -11.54828 -11.13230 -11.10810 -10.61673 -10.31314 -9.39841 -8.18828 -6.33235 1.37663 1.40105 1.52386 1.88908 2.28273 2.43230 3.09355 3.49415 3.55487 3.67138 3.92838 4.11106 4.21898 4.27824 4.38711 4.42243 4.63235 4.69679 4.84163 4.87474 4.92916 4.95552 5.00728 5.03982 5.13355 5.18672 5.23760 5.36635 5.43008 5.58946 5.73203 5.84167 6.14544 6.68171 6.70334 6.90417 7.32540 7.46769 8.86977 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.008095 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.024863 B = 3458.231113 C = 3621.689280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.033 3.967 3 H 0.037 0.963 4 C -0.518 4.518 5 H 0.038 0.962 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.267 1.267 12 C 0.538 3.462 13 O -0.603 6.603 14 N -0.611 5.611 15 C 0.099 3.901 16 C -0.118 4.118 17 C -0.114 4.114 18 C 0.096 3.904 19 H 0.070 0.930 20 C 0.089 3.911 21 H 0.054 0.946 22 C -0.167 4.167 23 O -0.572 6.572 24 H 0.020 0.980 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.267 0.733 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 0.340 11.344 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.012 3.988 3 H 0.055 0.945 4 C -0.556 4.556 5 H 0.057 0.943 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.192 1.192 12 C 0.330 3.670 13 O -0.485 6.485 14 N -0.343 5.343 15 C -0.024 4.024 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.008 4.008 19 H 0.088 0.912 20 C 0.029 3.971 21 H 0.072 0.928 22 C -0.225 4.225 23 O -0.381 6.381 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 12.122 -0.219 11.204 16.508 hybrid contribution 0.002 -0.302 -0.827 0.881 sum 12.124 -0.521 10.377 15.967 Atomic orbital electron populations 1.21494 0.96818 0.98649 1.00548 1.18783 0.94242 0.95892 0.89905 0.94514 1.20828 1.31950 1.12269 0.90530 0.94329 1.25603 0.94880 0.95588 1.01440 1.69972 1.36633 1.23548 1.24509 0.85487 0.78306 0.78632 0.79126 1.20255 1.20341 1.19219 1.21250 0.79656 0.81706 0.84394 1.90472 1.58075 1.37417 1.62537 1.48482 1.16053 1.35599 1.34189 1.22418 0.92114 0.89651 0.98186 1.22789 1.00232 0.97120 0.95472 1.22705 0.93508 0.95313 1.03639 1.22488 0.95885 0.93035 0.89373 0.91243 1.22147 0.93436 0.94670 0.86818 0.92763 1.22363 1.02277 1.00933 0.96937 1.86716 1.26562 1.87126 1.37665 0.96034 0.95755 0.90713 0.92321 0.92143 0.91929 0.86878 0.90092 0.86856 0.88970 0.90889 0.91965 0.88898 0.76853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.38 8.66 71.98 0.62 -5.75 16 2 C 0.03 1.78 2.19 -12.28 -0.03 1.75 16 3 H 0.04 2.01 6.67 -2.38 -0.02 2.00 16 4 C -0.52 -30.08 8.55 25.60 0.22 -29.86 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.02 1.39 5.29 84.65 0.45 1.84 16 7 N -0.91 -51.80 11.29 21.45 0.24 -51.56 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 C 0.54 27.27 6.63 87.66 0.58 27.85 16 13 O -0.60 -33.63 15.22 -3.03 -0.05 -33.68 16 14 N -0.61 -24.17 2.96 -788.03 -2.33 -26.50 16 15 C 0.10 3.19 6.62 86.85 0.57 3.76 16 16 C -0.12 -2.31 7.09 31.99 0.23 -2.08 16 17 C -0.11 -2.03 5.34 31.78 0.17 -1.86 16 18 C 0.10 2.86 2.71 45.34 0.12 2.99 16 19 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 20 C 0.09 2.82 3.33 30.59 0.10 2.92 16 21 H 0.05 2.31 7.00 -2.39 -0.02 2.29 16 22 C -0.17 -3.44 9.30 71.98 0.67 -2.77 16 23 O -0.57 -18.90 13.16 -148.98 -1.96 -20.86 16 24 H 0.02 1.18 7.69 -2.39 -0.02 1.16 16 25 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.07 4.26 5.96 -2.39 -0.01 4.24 16 27 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 2.18 6.91 -2.39 -0.02 2.16 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.30 5.87 -2.39 -0.01 1.29 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.27 7.27 -2.38 -0.02 1.25 16 37 H 0.38 8.39 7.01 -74.06 -0.52 7.87 16 Total: -1.00 -74.22 294.76 2.18 -72.04 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.54 Total: 15.04 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 3.71 Total: -1.20 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.09 Total: -78.06 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -2.01 Total: -54.53 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -74.22 2.18 -72.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598236531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.724 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds