Wall clock time and date at job start Mon Mar 30 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47288 * 2 1 4 4 C 1.50695 * 109.47016 * 239.99999 * 2 1 3 5 5 H 1.08004 * 120.00037 * 245.21248 * 4 2 1 6 6 C 1.37881 * 120.00470 * 65.21266 * 4 2 1 7 7 N 1.31518 * 119.99389 * 7.44465 * 6 4 2 8 8 Si 1.86801 * 120.00113 * 187.45181 * 6 4 2 9 9 H 1.48495 * 109.47374 * 94.98559 * 8 6 4 10 10 H 1.48507 * 109.46665 * 214.98408 * 8 6 4 11 11 H 1.48496 * 109.47104 * 334.97956 * 8 6 4 12 12 C 1.50695 * 109.47074 * 119.99860 * 2 1 3 13 13 O 1.21285 * 119.99961 * 100.09212 * 12 2 1 14 14 N 1.34774 * 120.00288 * 280.09327 * 12 2 1 15 15 C 1.46503 * 119.99626 * 5.41216 * 14 12 2 16 16 C 1.46502 * 120.00301 * 185.41447 * 14 12 2 17 17 C 1.53000 * 109.46859 * 269.99587 * 16 14 12 18 18 H 1.09005 * 112.84676 * 43.80574 * 17 16 14 19 19 C 1.53775 * 113.61390 * 174.99745 * 17 16 14 20 20 C 1.53784 * 87.08277 * 139.98341 * 19 17 16 21 21 H 1.08997 * 113.61214 * 89.19828 * 20 19 17 22 22 O 1.42900 * 113.61815 * 220.01951 * 20 19 17 23 23 C 1.53781 * 87.07967 * 334.56880 * 20 19 17 24 24 H 1.09006 * 109.46843 * 170.67217 * 1 2 3 25 25 H 1.08996 * 109.47344 * 290.67423 * 1 2 3 26 26 H 1.09001 * 109.47116 * 50.67693 * 1 2 3 27 27 H 0.97006 * 119.99514 * 180.02562 * 7 6 4 28 28 H 1.09011 * 109.46963 * 268.02856 * 15 14 12 29 29 H 1.08991 * 109.47396 * 28.03185 * 15 14 12 30 30 H 1.09007 * 109.46923 * 148.03630 * 15 14 12 31 31 H 1.09003 * 109.47088 * 150.00123 * 16 14 12 32 32 H 1.09000 * 109.46935 * 29.99660 * 16 14 12 33 33 H 1.09003 * 113.62118 * 254.53260 * 19 17 16 34 34 H 1.09002 * 113.61966 * 25.43837 * 19 17 16 35 35 H 0.96698 * 114.00318 * 179.97438 * 22 20 19 36 36 H 1.08999 * 113.61566 * 270.88584 * 23 20 19 37 37 H 1.08997 * 113.61680 * 139.97749 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5821 -1.6350 -1.1336 6 6 1.7902 -0.1801 -2.4799 7 7 1.2518 1.0144 -2.5941 8 14 2.2266 -1.1582 -4.0104 9 1 1.0295 -1.8993 -4.4823 10 1 2.6869 -0.2314 -5.0755 11 1 3.3106 -2.1212 -3.6899 12 6 2.0324 -0.7104 1.2304 13 8 2.4080 -1.8611 1.1554 14 7 2.0641 -0.0670 2.4143 15 6 1.5014 1.2806 2.5309 16 6 2.6615 -0.7151 3.5845 17 6 1.5869 -1.5058 4.3335 18 1 0.9409 -2.0778 3.6673 19 6 2.1354 -2.3255 5.5133 20 6 0.8763 -1.9041 6.2893 21 1 0.0353 -2.5853 6.1599 22 8 1.1278 -1.5871 7.6598 23 6 0.8194 -0.6710 5.3722 24 1 -0.3633 -1.0141 -0.1666 25 1 -0.3634 0.3628 0.9614 26 1 -0.3633 0.6512 -0.7950 27 1 1.0811 1.3874 -3.4732 28 1 2.2838 2.0180 2.3508 29 1 0.7066 1.4073 1.7959 30 1 1.0952 1.4193 3.5329 31 1 3.0812 0.0434 4.2453 32 1 3.4517 -1.3925 3.2608 33 1 2.1879 -3.3959 5.3145 34 1 3.0596 -1.9257 5.9306 35 1 0.3398 -1.3210 8.1530 36 1 1.3839 0.1811 5.7508 37 1 -0.1904 -0.4058 5.0593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600604256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:40 Heat of formation + Delta-G solvation = -94.104932 kcal Electronic energy + Delta-G solvation = -17843.057662 eV Core-core repulsion = 15006.037045 eV Total energy + Delta-G solvation = -2837.020616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07720 -39.89926 -36.69800 -35.85060 -35.38897 -32.64599 -29.39124 -27.38022 -27.15858 -26.58940 -24.53858 -22.96726 -20.52680 -20.00004 -18.44630 -18.36512 -17.58960 -17.09472 -16.57441 -16.26172 -15.77697 -15.16493 -14.89731 -14.72050 -14.24462 -14.11552 -13.50796 -13.36926 -13.15978 -12.96623 -12.92123 -12.78089 -12.67213 -12.40420 -12.32991 -12.20158 -12.01782 -11.70439 -11.20118 -11.07831 -10.74343 -10.54246 -10.23469 -9.46647 -8.19484 -6.25037 1.39042 1.40350 1.52094 1.92889 2.24048 2.46804 3.13152 3.34471 3.61206 3.65103 3.87839 3.97699 4.08869 4.39578 4.41495 4.44649 4.69049 4.70578 4.74735 4.82535 4.84262 4.85834 4.90181 4.96556 5.05959 5.11958 5.21587 5.42317 5.46485 5.69904 5.76403 5.88138 6.16374 6.61227 6.82657 6.94135 7.39225 7.52475 8.90041 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049363 B = 0.005129 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.093328 B = 5458.137887 C = 5713.822745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.027 3.973 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.518 3.482 13 O -0.589 6.589 14 N -0.621 5.621 15 C 0.074 3.926 16 C 0.127 3.873 17 C -0.124 4.124 18 H 0.068 0.932 19 C -0.124 4.124 20 C 0.083 3.917 21 H 0.091 0.909 22 O -0.575 6.575 23 C -0.149 4.149 24 H 0.023 0.977 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.395 0.605 36 H 0.098 0.902 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 1.168 17.410 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.006 3.994 3 H 0.062 0.938 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.309 3.691 13 O -0.469 6.469 14 N -0.354 5.354 15 C -0.068 4.068 16 C 0.005 3.995 17 C -0.144 4.144 18 H 0.086 0.914 19 C -0.162 4.162 20 C 0.024 3.976 21 H 0.108 0.892 22 O -0.384 6.384 23 C -0.186 4.186 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.116 0.884 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.551 0.576 17.076 17.275 hybrid contribution -0.264 -0.423 -1.087 1.195 sum -2.814 0.153 15.989 16.236 Atomic orbital electron populations 1.21539 0.95332 0.99819 1.00270 1.18775 0.94884 0.96214 0.89527 0.93813 1.21246 1.36000 1.08235 0.91458 0.93856 1.25561 0.95099 0.95612 1.01328 1.70005 1.44604 1.15703 1.24602 0.85644 0.78483 0.78780 0.79371 1.19845 1.19913 1.20491 1.21647 0.75943 0.86213 0.85338 1.90491 1.50102 1.19841 1.86437 1.48031 1.60392 1.18123 1.08821 1.22053 0.99173 0.81535 1.04035 1.21451 0.94948 0.96753 0.86363 1.22587 0.98345 0.98377 0.95098 0.91388 1.23071 0.98670 1.00224 0.94254 1.23256 0.97738 0.96208 0.80367 0.89165 1.86474 1.39469 1.89913 1.22513 1.23682 1.01162 0.98170 0.95633 0.95811 0.92545 0.92428 0.92547 0.92321 0.90889 0.88456 0.88044 0.92797 0.91223 0.88926 0.75507 0.88371 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.13 8.53 71.98 0.61 -4.52 16 2 C 0.03 1.39 1.67 -12.29 -0.02 1.37 16 3 H 0.04 2.29 7.39 -2.39 -0.02 2.28 16 4 C -0.53 -31.27 8.28 25.60 0.21 -31.06 16 5 H 0.04 2.74 6.91 -2.91 -0.02 2.72 16 6 C 0.02 1.34 5.27 84.66 0.45 1.78 16 7 N -0.91 -51.50 12.13 21.45 0.26 -51.24 16 8 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.52 24.45 6.81 87.66 0.60 25.04 16 13 O -0.59 -32.18 15.31 -3.04 -0.05 -32.22 16 14 N -0.62 -21.85 2.87 -846.73 -2.43 -24.28 16 15 C 0.07 2.01 9.82 127.77 1.26 3.27 16 16 C 0.13 3.75 5.21 86.38 0.45 4.20 16 17 C -0.12 -3.20 3.96 -10.27 -0.04 -3.24 16 18 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 19 C -0.12 -2.77 7.47 31.12 0.23 -2.54 16 20 C 0.08 1.53 5.21 31.12 0.16 1.69 16 21 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 22 O -0.58 -10.08 13.67 -148.98 -2.04 -12.12 16 23 C -0.15 -2.80 7.02 31.12 0.22 -2.58 16 24 H 0.02 1.11 8.11 -2.38 -0.02 1.09 16 25 H 0.06 2.11 6.12 -2.39 -0.01 2.10 16 26 H 0.06 2.82 7.04 -2.39 -0.02 2.80 16 27 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.07 2.17 4.65 -2.39 -0.01 2.16 16 30 H 0.10 1.90 7.63 -2.38 -0.02 1.88 16 31 H 0.10 2.32 7.77 -2.39 -0.02 2.30 16 32 H 0.05 1.87 7.50 -2.39 -0.02 1.85 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 35 H 0.39 3.27 9.12 -74.06 -0.68 2.59 16 36 H 0.10 1.68 7.90 -2.39 -0.02 1.66 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -71.04 301.38 2.28 -68.76 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.39 Total: 10.34 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.13 Total: -6.59 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -2.17 Total: -75.52 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -2.08 Total: -44.34 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.04 2.28 -68.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600604256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.347 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds