Wall clock time and date at job start Mon Mar 30 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99919 * 2 1 4 4 C 1.52999 * 109.47222 * 71.84511 * 3 2 1 5 5 C 1.50706 * 115.55034 * 294.38324 * 4 3 2 6 6 H 1.07997 * 119.99848 * 145.56032 * 5 4 3 7 7 C 1.37869 * 119.99863 * 325.56797 * 5 4 3 8 8 N 1.31522 * 120.00150 * 349.12138 * 7 5 4 9 9 Si 1.86799 * 120.00238 * 169.12586 * 7 5 4 10 10 H 1.48507 * 109.46833 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47497 * 119.99585 * 9 7 5 12 12 H 1.48502 * 109.47162 * 240.00243 * 9 7 5 13 13 C 1.53005 * 117.50394 * 148.71442 * 4 3 2 14 14 C 1.52997 * 117.50278 * 80.05286 * 4 3 2 15 15 C 1.46895 * 110.99922 * 236.04815 * 2 1 3 16 16 H 1.08996 * 110.45876 * 71.35910 * 15 2 1 17 17 C 1.54486 * 110.51179 * 308.75395 * 15 2 1 18 18 O 1.44429 * 104.89898 * 217.18372 * 17 15 2 19 19 C 1.44687 * 105.13952 * 40.49822 * 18 17 15 20 20 C 1.54487 * 104.83934 * 319.51615 * 19 18 17 21 21 H 1.08998 * 110.50956 * 265.33463 * 20 19 18 22 22 O 1.42892 * 110.51167 * 142.62336 * 20 19 18 23 23 H 1.08999 * 109.47226 * 172.10184 * 1 2 3 24 24 H 1.09004 * 109.47054 * 292.09694 * 1 2 3 25 25 H 1.08993 * 109.47421 * 52.09792 * 1 2 3 26 26 H 1.09007 * 109.47456 * 191.84111 * 3 2 1 27 27 H 1.09001 * 109.47258 * 311.84125 * 3 2 1 28 28 H 0.97004 * 119.99791 * 185.03966 * 8 7 5 29 29 H 1.09001 * 117.48953 * 0.02562 * 13 4 3 30 30 H 1.09001 * 117.49952 * 145.01707 * 13 4 3 31 31 H 1.08997 * 117.50640 * 214.98427 * 14 4 3 32 32 H 1.09003 * 117.49698 * 359.97438 * 14 4 3 33 33 H 1.08997 * 110.37016 * 336.07219 * 17 15 2 34 34 H 1.08997 * 110.37326 * 98.29515 * 17 15 2 35 35 H 1.09002 * 110.35574 * 200.67130 * 19 18 17 36 36 H 1.09008 * 110.35774 * 78.35508 * 19 18 17 37 37 H 0.96708 * 113.99900 * 65.36026 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7586 2.0086 1.3707 5 6 0.3153 2.2278 1.7449 6 1 0.0032 2.1284 2.7740 7 6 -0.6067 2.5552 0.7735 8 7 -0.2012 2.8856 -0.4333 9 14 -2.4316 2.5298 1.1713 10 1 -2.6239 2.1275 2.5878 11 1 -3.0036 3.8836 0.9587 12 1 -3.1182 1.5573 0.2835 13 6 2.7787 3.0406 1.8559 14 6 2.7330 1.6501 2.4944 15 6 1.9954 -0.7659 -1.1376 16 1 1.8272 -0.2272 -2.0701 17 6 1.3438 -2.1654 -1.1958 18 8 2.4022 -3.0504 -1.6231 19 6 3.5797 -2.6025 -0.9114 20 6 3.5001 -1.0600 -0.9461 21 1 4.0758 -0.6667 -1.7840 22 8 3.9655 -0.5068 0.2864 23 1 -0.3633 -1.0179 -0.1412 24 1 -0.3633 0.3866 0.9522 25 1 -0.3634 0.6313 -0.8108 26 1 3.0647 1.3502 -0.2109 27 1 1.4856 1.9563 -0.7656 28 1 -0.8434 3.1863 -1.0953 29 1 3.6183 3.2658 1.1983 30 1 2.4060 3.8778 2.4460 31 1 2.3304 1.5731 3.5043 32 1 3.5427 0.9599 2.2573 33 1 0.9808 -2.4562 -0.2101 34 1 0.5273 -2.1741 -1.9178 35 1 4.4820 -2.9474 -1.4163 36 1 3.5595 -2.9603 0.1181 37 1 4.9046 -0.6620 0.4574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708745096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:22 Heat of formation + Delta-G solvation = -34.200682 kcal Electronic energy + Delta-G solvation = -19057.172285 eV Core-core repulsion = 16222.749311 eV Total energy + Delta-G solvation = -2834.422973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55868 -37.06291 -35.69989 -34.42118 -32.27119 -29.29780 -28.16876 -26.24275 -25.60634 -23.13259 -21.91827 -20.89607 -19.56526 -18.77853 -17.36802 -16.30318 -15.98791 -15.17869 -14.82521 -14.70941 -14.08891 -13.81408 -13.44534 -12.98307 -12.82887 -12.30671 -12.14403 -11.86688 -11.41894 -11.24740 -10.99763 -10.85729 -10.51216 -10.33000 -10.16418 -10.01389 -9.87789 -9.82536 -9.38421 -9.12386 -8.77408 -8.48122 -7.96098 -7.01592 -5.91645 -3.98168 3.22866 3.33192 3.37564 4.02629 4.34708 4.66588 4.84565 4.86198 5.03576 5.10187 5.33897 5.58251 5.66464 5.80511 5.90594 5.97592 6.03987 6.21840 6.34146 6.44785 6.70924 6.85299 6.91960 6.94273 6.99081 7.14572 7.17699 7.40764 7.52448 7.57369 7.63193 7.95195 8.10297 8.39520 8.45351 8.58921 8.94742 9.52006 10.96344 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.009700 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.522791 B = 2885.765910 C = 3608.295017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.496 5.496 3 C 0.090 3.910 4 C 0.065 3.935 5 C -0.475 4.475 6 H 0.058 0.942 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.280 1.280 13 C -0.210 4.210 14 C -0.193 4.193 15 C 0.055 3.945 16 H 0.048 0.952 17 C 0.051 3.949 18 O -0.380 6.380 19 C 0.018 3.982 20 C 0.081 3.919 21 H 0.059 0.941 22 O -0.516 6.516 23 H 0.023 0.977 24 H 0.105 0.895 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -7.360 -2.484 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.220 5.220 3 C -0.037 4.037 4 C 0.064 3.936 5 C -0.512 4.512 6 H 0.076 0.924 7 C -0.128 4.128 8 N -0.519 5.519 9 Si 0.706 3.294 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.205 1.205 13 C -0.249 4.249 14 C -0.230 4.230 15 C -0.055 4.055 16 H 0.066 0.934 17 C -0.025 4.025 18 O -0.298 6.298 19 C -0.060 4.060 20 C 0.021 3.979 21 H 0.077 0.923 22 O -0.318 6.318 23 H 0.042 0.958 24 H 0.123 0.877 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.221 -7.588 -2.371 9.511 hybrid contribution -0.585 0.478 -0.510 0.911 sum 4.636 -7.110 -2.881 8.963 Atomic orbital electron populations 1.22987 0.87819 0.97374 1.05449 1.61955 1.07486 1.16053 1.36552 1.21923 0.96441 0.86111 0.99228 1.18787 0.89914 0.94316 0.90533 1.20638 0.91076 1.45805 0.93697 0.92370 1.24937 0.98434 0.94511 0.94880 1.69808 1.33487 1.44207 1.04442 0.86762 0.85900 0.77828 0.78883 1.19508 1.21083 1.20534 1.22926 1.03827 0.92621 1.05509 1.22735 1.04713 0.97417 0.98148 1.22940 0.92351 0.95195 0.95040 0.93378 1.23594 0.90318 0.88007 1.00607 1.89121 1.19273 1.54952 1.66474 1.24206 0.89241 0.94851 0.97678 1.23090 0.95747 0.91695 0.87412 0.92299 1.87016 1.28118 1.78417 1.38240 0.95795 0.87705 0.94675 0.94096 0.89239 0.93062 0.92220 0.91101 0.91845 0.90416 0.90794 0.89530 0.89711 0.91272 0.79664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 7.63 60.06 0.46 0.71 16 2 N -0.50 -10.69 4.04 -233.00 -0.94 -11.63 16 3 C 0.09 2.11 4.08 -3.83 -0.02 2.10 16 4 C 0.07 1.62 2.00 -155.66 -0.31 1.31 16 5 C -0.47 -12.66 7.02 -34.44 -0.24 -12.91 16 6 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 7 C 0.07 1.91 2.94 -17.82 -0.05 1.85 16 8 N -0.88 -23.40 9.18 55.43 0.51 -22.90 16 9 Si 0.88 20.34 28.90 -169.99 -4.91 15.43 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C -0.21 -4.93 9.92 -26.69 -0.26 -5.19 16 14 C -0.19 -4.39 9.96 -26.70 -0.27 -4.66 16 15 C 0.05 1.01 2.85 -66.14 -0.19 0.82 16 16 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 17 C 0.05 0.85 5.79 37.94 0.22 1.07 16 18 O -0.38 -6.12 11.67 -35.23 -0.41 -6.53 16 19 C 0.02 0.24 7.38 37.94 0.28 0.52 16 20 C 0.08 1.24 4.09 -25.16 -0.10 1.14 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 O -0.52 -8.27 9.44 -35.23 -0.33 -8.60 16 23 H 0.02 0.46 6.06 -51.93 -0.31 0.15 16 24 H 0.10 2.59 4.25 -51.93 -0.22 2.37 16 25 H 0.03 0.84 6.30 -51.93 -0.33 0.51 16 26 H 0.04 0.94 5.93 -51.93 -0.31 0.63 16 27 H 0.09 2.37 5.18 -51.93 -0.27 2.10 16 28 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 31 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.68 7.18 -51.93 -0.37 1.31 16 33 H 0.07 1.28 7.28 -51.93 -0.38 0.90 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.95 8.09 -51.92 -0.42 0.53 16 37 H 0.36 3.94 9.12 45.56 0.42 4.36 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -28.44 280.71 -7.04 -35.48 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.70 Total: 7.75 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -0.49 Total: -13.23 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.43 Total: -34.52 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.74 Total: -15.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.91 Total: 15.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.44 -7.04 -35.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708745096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.276 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds