Wall clock time and date at job start Mon Mar 30 2020 03:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46710 * 2 1 4 4 C 1.50699 * 109.47311 * 119.99825 * 2 1 3 5 5 O 1.21291 * 120.00098 * 105.54654 * 4 2 1 6 6 N 1.34774 * 120.00222 * 285.54442 * 4 2 1 7 7 C 1.46499 * 120.00495 * 185.29800 * 6 4 2 8 8 C 1.37108 * 120.00012 * 5.30032 * 6 4 2 9 9 H 1.08000 * 119.99577 * 19.71509 * 8 6 4 10 10 C 1.38947 * 120.00359 * 199.72120 * 8 6 4 11 11 N 1.31412 * 119.99795 * 351.44544 * 10 8 6 12 12 Si 1.86796 * 120.00241 * 171.43898 * 10 8 6 13 13 H 1.48501 * 109.47286 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46897 * 119.99806 * 12 10 8 15 15 H 1.48494 * 109.47357 * 240.00008 * 12 10 8 16 16 C 1.52999 * 109.47182 * 239.99882 * 2 1 3 17 17 H 1.08997 * 109.48238 * 300.02335 * 16 2 1 18 18 C 1.53093 * 109.47920 * 60.05752 * 16 2 1 19 19 C 1.53175 * 109.16266 * 177.59058 * 18 16 2 20 20 C 1.53173 * 109.03964 * 303.01627 * 19 18 16 21 21 C 1.53100 * 109.16014 * 56.97996 * 20 19 18 22 22 O 1.42898 * 109.41153 * 302.39332 * 21 20 19 23 23 H 1.08998 * 109.46823 * 292.77822 * 1 2 3 24 24 H 1.08994 * 109.47429 * 52.77720 * 1 2 3 25 25 H 1.09005 * 109.46717 * 172.78271 * 1 2 3 26 26 H 1.08991 * 109.47393 * 234.47380 * 7 6 4 27 27 H 1.08997 * 109.47041 * 114.47019 * 7 6 4 28 28 H 1.09000 * 109.46887 * 354.47372 * 7 6 4 29 29 H 0.96999 * 120.00096 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.51997 * 297.49490 * 18 16 2 31 31 H 1.09000 * 109.52860 * 57.68405 * 18 16 2 32 32 H 1.09003 * 109.54143 * 183.14599 * 19 18 16 33 33 H 1.09000 * 109.54626 * 62.88828 * 19 18 16 34 34 H 1.08996 * 109.52392 * 297.07609 * 20 19 18 35 35 H 1.08995 * 109.52183 * 176.88392 * 20 19 18 36 36 H 1.09000 * 109.47717 * 182.40664 * 21 20 19 37 37 H 1.08994 * 109.48654 * 62.38042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5000 -1.8257 1.1384 6 7 1.9621 -0.1063 2.4332 7 6 2.5546 -0.7465 3.6102 8 6 1.3361 1.1073 2.5553 9 1 0.6371 1.4328 1.7991 10 6 1.6009 1.9186 3.6519 11 7 2.3171 1.4574 4.6526 12 14 0.9393 3.6646 3.7035 13 1 0.1689 3.9390 2.4639 14 1 0.0509 3.8226 4.8830 15 1 2.0714 4.6202 3.8049 16 6 2.0400 -0.7213 -1.2492 17 1 1.6764 -1.7488 -1.2496 18 6 1.5310 0.0011 -2.4994 19 6 2.0946 -0.6907 -3.7443 20 6 3.6241 -0.7007 -3.6611 21 6 4.0523 -1.3960 -2.3660 22 8 3.4690 -0.7213 -1.2495 23 1 -0.3633 0.3979 0.9475 24 1 -0.3634 0.6216 -0.8183 25 1 -0.3633 -1.0196 -0.1291 26 1 1.8019 -0.8346 4.3935 27 1 3.3867 -0.1425 3.9721 28 1 2.9163 -1.7388 3.3406 29 1 2.5017 2.0236 5.4183 30 1 0.4418 -0.0363 -2.5235 31 1 1.8603 1.0399 -2.4794 32 1 1.7815 -0.1480 -4.6363 33 1 1.7253 -1.7152 -3.7910 34 1 3.9958 0.3239 -3.6645 35 1 4.0319 -1.2400 -4.5160 36 1 5.1386 -1.3682 -2.2806 37 1 3.7152 -2.4324 -2.3811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711920723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:24 Heat of formation + Delta-G solvation = -84.839127 kcal Electronic energy + Delta-G solvation = -18512.790658 eV Core-core repulsion = 15676.171837 eV Total energy + Delta-G solvation = -2836.618821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46643 -37.99505 -34.66185 -33.64776 -33.20406 -31.30796 -29.35044 -26.25259 -25.02117 -24.45050 -23.66291 -21.22700 -19.91518 -18.80251 -17.00281 -16.23367 -15.75145 -15.40213 -14.47042 -14.31135 -14.16009 -13.91430 -13.76583 -13.11929 -12.86137 -12.48023 -12.27007 -12.05285 -11.49145 -11.39879 -11.26515 -11.05710 -10.94374 -10.92589 -10.60291 -10.46949 -10.35514 -10.23687 -10.05060 -9.81104 -8.99165 -8.95512 -8.15980 -7.70876 -6.22429 -3.85181 3.12503 3.21807 3.24691 4.02860 4.11514 4.25467 4.76123 4.95948 5.04222 5.08154 5.16468 5.35584 5.48303 5.60864 5.70556 5.81823 5.89331 5.93778 5.99942 6.04190 6.11008 6.14392 6.17939 6.40650 6.45140 6.58202 6.67227 6.82131 7.04223 7.28760 7.47979 7.65387 7.80800 7.90138 8.49338 9.15903 9.67139 10.07712 10.72075 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030584 B = 0.007226 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.290448 B = 3874.142268 C = 4272.938701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.094 0.906 4 C 0.468 3.532 5 O -0.606 6.606 6 N -0.451 5.451 7 C 0.117 3.883 8 C -0.333 4.333 9 H 0.104 0.896 10 C 0.035 3.965 11 N -0.874 5.874 12 Si 0.920 3.080 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.280 1.280 16 C 0.115 3.885 17 H 0.059 0.941 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.156 4.156 21 C 0.063 3.937 22 O -0.362 6.362 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -0.447 -12.089 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.112 0.888 4 C 0.256 3.744 5 O -0.492 6.492 6 N -0.169 5.169 7 C -0.026 4.026 8 C -0.460 4.460 9 H 0.121 0.879 10 C -0.169 4.169 11 N -0.513 5.513 12 Si 0.746 3.254 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.206 1.206 16 C 0.057 3.943 17 H 0.077 0.923 18 C -0.190 4.190 19 C -0.158 4.158 20 C -0.194 4.194 21 C -0.015 4.015 22 O -0.280 6.280 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.279 -0.824 -11.738 11.836 hybrid contribution -0.447 0.953 -0.014 1.053 sum -1.726 0.129 -11.752 11.879 Atomic orbital electron populations 1.21840 0.93507 1.01570 1.03163 1.20980 0.96241 1.01006 0.92551 0.88828 1.19791 0.83323 0.86952 0.84331 1.90494 1.51978 1.20690 1.86083 1.43613 1.48903 1.18530 1.05876 1.21578 0.99222 0.94991 0.86795 1.19876 1.23171 0.93667 1.09321 0.87859 1.25408 0.96358 0.99586 0.95516 1.70155 1.38258 1.35794 1.07090 0.85976 0.78499 0.82496 0.78386 1.19250 1.20765 1.20565 1.21832 0.81199 0.98351 0.92931 0.92281 1.22303 1.01031 1.00653 0.95060 1.21572 0.95460 1.00796 0.97967 1.22217 0.96522 1.01983 0.98685 1.22446 0.98233 0.95114 0.85683 1.88037 1.19366 1.76606 1.44024 0.90091 0.92634 0.92985 0.93505 0.90482 0.94758 0.92407 0.90796 0.91147 0.91958 0.92059 0.91280 0.91523 0.89545 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.24 37.16 0.31 -2.19 16 2 C -0.09 -1.78 1.70 -91.77 -0.16 -1.94 16 3 H 0.09 1.98 7.64 -51.93 -0.40 1.58 16 4 C 0.47 11.93 6.63 -10.99 -0.07 11.86 16 5 O -0.61 -16.89 14.98 -5.76 -0.09 -16.98 16 6 N -0.45 -12.04 3.03 -122.20 -0.37 -12.41 16 7 C 0.12 3.10 8.93 59.85 0.53 3.63 16 8 C -0.33 -8.60 8.47 -14.93 -0.13 -8.73 16 9 H 0.10 2.46 4.78 -52.49 -0.25 2.21 16 10 C 0.04 0.90 5.46 -17.47 -0.10 0.81 16 11 N -0.87 -23.44 9.77 55.50 0.54 -22.90 16 12 Si 0.92 19.70 29.56 -169.99 -5.03 14.68 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 C 0.12 2.12 1.75 -26.68 -0.05 2.08 16 17 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 18 C -0.15 -2.16 5.00 -26.59 -0.13 -2.30 16 19 C -0.12 -1.45 6.03 -26.55 -0.16 -1.61 16 20 C -0.16 -1.91 6.14 -26.59 -0.16 -2.08 16 21 C 0.06 0.95 6.84 37.21 0.25 1.21 16 22 O -0.36 -7.27 9.68 -46.54 -0.45 -7.72 16 23 H 0.08 1.53 5.71 -51.93 -0.30 1.23 16 24 H 0.05 0.79 6.90 -51.93 -0.36 0.43 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 1.24 7.72 -51.93 -0.40 0.84 16 27 H 0.08 2.12 6.51 -51.93 -0.34 1.78 16 28 H 0.03 0.89 6.91 -51.93 -0.36 0.53 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.07 0.94 6.74 -51.93 -0.35 0.58 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -30.48 287.82 -6.59 -37.07 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.68 Total: 3.18 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 0.14 Total: 0.75 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.17 Total: -35.31 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.54 Total: -24.70 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.48 -6.59 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711920723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.766 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds