Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46829 * 2 1 4 4 C 1.50703 * 109.47149 * 240.00078 * 2 1 3 5 5 O 1.21286 * 120.00358 * 247.90710 * 4 2 1 6 6 N 1.34782 * 119.99743 * 67.91539 * 4 2 1 7 7 C 1.46501 * 119.99978 * 183.53606 * 6 4 2 8 8 C 1.37093 * 120.00243 * 3.52683 * 6 4 2 9 9 H 1.08006 * 119.99882 * 346.88636 * 8 6 4 10 10 C 1.38945 * 119.99984 * 166.87767 * 8 6 4 11 11 N 1.31412 * 120.00124 * 8.39793 * 10 8 6 12 12 Si 1.86809 * 120.00169 * 188.39748 * 10 8 6 13 13 H 1.48503 * 109.46866 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.47076 * 119.99839 * 12 10 8 15 15 H 1.48493 * 109.47006 * 240.00405 * 12 10 8 16 16 C 1.53000 * 109.47313 * 120.00232 * 2 1 3 17 17 H 1.09003 * 109.47899 * 59.97331 * 16 2 1 18 18 C 1.53283 * 109.46304 * 299.99349 * 16 2 1 19 19 C 1.53183 * 109.05985 * 182.44304 * 18 16 2 20 20 C 1.53170 * 109.11104 * 56.93787 * 19 18 16 21 21 C 1.53087 * 109.16727 * 302.97649 * 20 19 18 22 22 O 1.42898 * 109.48378 * 180.02562 * 16 2 1 23 23 H 1.09003 * 109.46878 * 184.24804 * 1 2 3 24 24 H 1.08997 * 109.47414 * 304.24729 * 1 2 3 25 25 H 1.09004 * 109.47187 * 64.25411 * 1 2 3 26 26 H 1.09008 * 109.46823 * 5.48501 * 7 6 4 27 27 H 1.08997 * 109.47313 * 125.47611 * 7 6 4 28 28 H 1.08989 * 109.47012 * 245.48458 * 7 6 4 29 29 H 0.97003 * 120.00109 * 179.97438 * 11 10 8 30 30 H 1.09002 * 109.64375 * 62.52985 * 18 16 2 31 31 H 1.09004 * 109.50532 * 302.27430 * 18 16 2 32 32 H 1.09005 * 109.54023 * 297.02664 * 19 18 16 33 33 H 1.09000 * 109.54468 * 176.85537 * 19 18 16 34 34 H 1.09002 * 109.52322 * 62.88080 * 20 19 18 35 35 H 1.09004 * 109.52546 * 183.06851 * 20 19 18 36 36 H 1.08996 * 109.48559 * 177.58922 * 21 20 19 37 37 H 1.09005 * 109.48004 * 297.61334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6070 -1.7733 -1.1251 6 7 1.8432 -0.1645 -2.4482 7 6 2.2621 -0.8907 -3.6496 8 6 1.2587 1.0703 -2.5626 9 1 0.7607 1.5129 -1.7125 10 6 1.3072 1.7525 -3.7720 11 7 1.7644 1.1516 -4.8476 12 14 0.7223 3.5241 -3.8693 13 1 0.2585 3.9664 -2.5297 14 1 1.8420 4.3911 -4.3161 15 1 -0.3979 3.6229 -4.8391 16 6 2.0401 -0.7213 1.2492 17 1 1.6764 -1.7489 1.2495 18 6 1.5292 0.0015 2.5007 19 6 2.0947 -0.6913 3.7443 20 6 3.6241 -0.7014 3.6610 21 6 4.0523 -1.3962 2.3659 22 8 3.4691 -0.7209 1.2497 23 1 -0.3633 -1.0249 0.0761 24 1 -0.3634 0.5783 0.8494 25 1 -0.3634 0.4464 -0.9257 26 1 2.6121 -1.8844 -3.3699 27 1 1.4171 -0.9820 -4.3321 28 1 3.0685 -0.3463 -4.1406 29 1 1.7978 1.6278 -5.6920 30 1 0.4401 -0.0359 2.5265 31 1 1.8586 1.0403 2.4810 32 1 1.7253 -1.7158 3.7906 33 1 1.7816 -0.1502 4.6373 34 1 3.9958 0.3233 3.6646 35 1 4.0320 -1.2408 4.5159 36 1 5.1386 -1.3685 2.2804 37 1 3.7153 -2.4328 2.3809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711920725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -101.464763 kcal Electronic energy + Delta-G solvation = -18503.688804 eV Core-core repulsion = 15666.349041 eV Total energy + Delta-G solvation = -2837.339763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04289 -39.67122 -36.69773 -35.17582 -34.37171 -33.30323 -30.64232 -28.26429 -26.74529 -25.88303 -25.00232 -22.72752 -21.09678 -20.74697 -18.83625 -17.96667 -17.16654 -16.81558 -16.19736 -16.01513 -15.74257 -15.36585 -15.21937 -14.68181 -14.38364 -13.84049 -13.73072 -13.45426 -13.33881 -13.01288 -12.84265 -12.73739 -12.50205 -12.33056 -12.06722 -11.99640 -11.87675 -11.84163 -11.43344 -11.15358 -10.97106 -10.29549 -10.08894 -9.83903 -8.19682 -5.85605 1.43730 1.48068 1.61504 2.10559 2.30655 2.94321 3.01834 3.19931 3.86509 3.95874 3.99979 4.08255 4.24189 4.26287 4.42271 4.52082 4.53412 4.70023 4.73814 4.83262 4.90491 5.00539 5.06601 5.08946 5.13330 5.15956 5.23103 5.26081 5.31934 5.42704 5.46766 5.55271 5.84992 6.46085 6.52043 7.15357 7.66066 8.06177 8.77566 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.007077 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.222232 B = 3955.269625 C = 4374.649868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.088 0.912 4 C 0.450 3.550 5 O -0.637 6.637 6 N -0.467 5.467 7 C 0.139 3.861 8 C -0.347 4.347 9 H 0.124 0.876 10 C -0.017 4.017 11 N -0.909 5.909 12 Si 0.994 3.006 13 H -0.249 1.249 14 H -0.284 1.284 15 H -0.279 1.279 16 C 0.116 3.884 17 H 0.040 0.960 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.149 4.149 21 C 0.052 3.948 22 O -0.401 6.401 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.267 0.733 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 1.414 14.673 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.106 0.894 4 C 0.240 3.760 5 O -0.525 6.525 6 N -0.185 5.185 7 C -0.005 4.005 8 C -0.474 4.474 9 H 0.142 0.858 10 C -0.217 4.217 11 N -0.549 5.549 12 Si 0.817 3.183 13 H -0.172 1.172 14 H -0.210 1.210 15 H -0.204 1.204 16 C 0.058 3.942 17 H 0.058 0.942 18 C -0.183 4.183 19 C -0.157 4.157 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.321 6.321 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.131 1.035 14.337 14.531 hybrid contribution 0.017 0.342 -0.809 0.879 sum -2.114 1.377 13.528 13.761 Atomic orbital electron populations 1.21815 0.90931 1.02488 1.04150 1.21050 0.98314 0.99962 0.91020 0.89425 1.20751 0.83135 0.86657 0.85445 1.90464 1.48762 1.26371 1.86950 1.43972 1.52406 1.17436 1.04728 1.21227 0.99816 0.92886 0.86528 1.20371 1.34339 0.92976 0.99746 0.85843 1.26329 0.96862 1.03905 0.94637 1.70345 1.46415 1.37717 1.00445 0.84843 0.77461 0.76636 0.79321 1.17198 1.21002 1.20431 1.21850 0.80900 0.97582 0.93863 0.94231 1.22295 1.02159 1.00197 0.93626 1.21610 0.94960 1.01220 0.97876 1.22166 0.97015 1.01880 0.97570 1.22696 0.98502 0.95043 0.86222 1.87976 1.20262 1.77273 1.46555 0.92951 0.88590 0.91362 0.95533 0.93240 0.93165 0.92326 0.88778 0.90969 0.91742 0.89137 0.91269 0.88822 0.88986 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.32 71.98 0.60 -3.91 16 2 C -0.08 -3.32 1.68 -11.54 -0.02 -3.34 16 3 H 0.09 3.59 7.53 -2.39 -0.02 3.57 16 4 C 0.45 23.37 6.74 87.66 0.59 23.96 16 5 O -0.64 -36.71 14.80 11.69 0.17 -36.54 16 6 N -0.47 -25.40 3.03 -658.89 -1.99 -27.39 16 7 C 0.14 7.64 8.87 127.77 1.13 8.77 16 8 C -0.35 -17.87 8.35 84.04 0.70 -17.17 16 9 H 0.12 5.72 4.86 -2.91 -0.01 5.70 16 10 C -0.02 -0.88 5.46 84.93 0.46 -0.42 16 11 N -0.91 -49.34 9.57 21.66 0.21 -49.14 16 12 Si 0.99 39.64 29.56 68.60 2.03 41.66 16 13 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 14 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 C 0.12 4.17 1.75 30.69 0.05 4.22 16 17 H 0.04 1.53 8.01 -2.39 -0.02 1.52 16 18 C -0.15 -3.65 5.00 30.75 0.15 -3.50 16 19 C -0.12 -2.43 6.02 30.71 0.18 -2.25 16 20 C -0.15 -3.21 6.14 30.68 0.19 -3.03 16 21 C 0.05 1.54 6.84 72.01 0.49 2.04 16 22 O -0.40 -16.11 9.51 -134.24 -1.28 -17.39 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.10 2.37 6.73 -2.39 -0.02 2.35 16 25 H 0.07 2.49 5.70 -2.39 -0.01 2.48 16 26 H 0.03 1.43 6.94 -2.38 -0.02 1.42 16 27 H 0.05 2.73 7.31 -2.39 -0.02 2.72 16 28 H 0.05 2.87 6.86 -2.39 -0.02 2.85 16 29 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.09 1.97 6.68 -2.39 -0.02 1.96 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -67.18 287.02 4.73 -62.45 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.05 Total: 20.95 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 4.54 Total: 5.38 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.79 Total: -76.53 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -1.10 Total: -53.93 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Total: -67.18 4.73 -62.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711920725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.012 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds