Wall clock time and date at job start Mon Mar 30 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.42898 * 113.99905 * 179.97438 * 17 16 14 19 19 C 1.53790 * 113.61319 * 249.13393 * 18 17 16 20 20 C 1.53952 * 87.01856 * 220.04812 * 19 18 17 21 21 C 1.53782 * 113.61619 * 151.52723 * 18 17 16 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 27 27 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 28 28 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 29 29 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 30 30 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 31 31 H 1.09007 * 112.85462 * 20.32862 * 18 17 16 32 32 H 1.08993 * 113.61101 * 334.56530 * 19 18 17 33 33 H 1.08999 * 113.61403 * 105.47084 * 19 18 17 34 34 H 1.09005 * 113.53970 * 270.81195 * 20 19 18 35 35 H 1.09003 * 113.66488 * 139.92966 * 20 19 18 36 36 H 1.08997 * 113.61520 * 254.52830 * 21 18 17 37 37 H 1.08994 * 113.61230 * 25.34433 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 8 4.0892 0.1526 4.0918 18 6 4.6171 -0.4249 5.2876 19 6 3.9916 0.1415 6.5734 20 6 5.4054 0.1044 7.1817 21 6 5.9422 0.2078 5.7443 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.4158 -2.7376 0.9718 27 1 1.6238 -2.2851 2.5003 28 1 0.6905 -2.3002 0.9847 29 1 2.4483 -1.0888 3.9070 30 1 3.9016 -1.6021 3.0167 31 1 4.6411 -1.5142 5.2569 32 1 3.5925 1.1491 6.4575 33 1 3.2902 -0.5401 7.0546 34 1 5.6445 -0.8403 7.6701 35 1 5.6391 0.9721 7.7985 36 1 6.8132 -0.4202 5.5573 37 1 6.0779 1.2331 5.4002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716906017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:01 Heat of formation + Delta-G solvation = -58.026419 kcal Electronic energy + Delta-G solvation = -17596.849444 eV Core-core repulsion = 14761.393310 eV Total energy + Delta-G solvation = -2835.456135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50927 -38.66641 -35.87171 -35.06542 -32.85473 -29.86377 -27.36105 -26.07636 -25.72911 -25.18427 -24.48128 -21.15703 -19.80841 -18.34511 -17.22354 -16.59332 -16.05532 -15.55963 -15.43258 -15.10050 -14.54215 -13.90426 -13.82714 -12.83997 -12.58789 -12.56173 -12.49925 -12.00146 -11.75142 -11.54712 -11.46924 -11.34175 -11.04090 -10.83191 -10.77708 -10.67784 -10.48917 -10.24454 -10.14748 -9.38792 -9.16801 -8.84057 -8.40381 -7.58169 -6.05365 -4.13494 3.29094 3.32454 3.34446 3.40303 3.43075 4.28421 4.42796 4.49436 4.56812 4.76716 4.80350 5.11962 5.22827 5.27728 5.33118 5.46352 5.55474 5.69473 5.71130 5.74412 5.85708 6.03885 6.05307 6.19588 6.27316 6.77093 6.82853 7.06288 7.24372 7.47933 7.55529 7.72831 8.03798 8.21008 8.52969 8.85448 9.08118 9.52863 10.99977 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044025 B = 0.004782 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.849096 B = 5854.022676 C = 5980.470738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.503 3.497 15 O -0.533 6.533 16 C 0.045 3.955 17 O -0.348 6.348 18 C 0.057 3.943 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.012 0.988 23 H 0.094 0.906 24 H 0.030 0.970 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -6.663 15.407 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.059 4.059 14 C 0.289 3.711 15 O -0.409 6.409 16 C -0.035 4.035 17 O -0.265 6.265 18 C -0.001 4.001 19 C -0.196 4.196 20 C -0.179 4.179 21 C -0.174 4.174 22 H 0.031 0.969 23 H 0.113 0.887 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.226 -5.721 15.080 16.673 hybrid contribution 0.193 -0.974 -0.815 1.284 sum 4.419 -6.694 14.265 16.366 Atomic orbital electron populations 1.22098 0.98175 0.99349 1.00920 1.18951 0.90862 0.94588 0.79736 0.91831 1.21280 1.31893 1.13011 0.90293 0.92337 1.24898 0.94952 0.94986 0.98957 1.69872 1.36295 1.22585 1.23863 0.86539 0.79250 0.79521 0.81965 1.21162 1.20246 1.20257 1.48201 1.49232 1.11685 1.23611 1.21579 1.01887 0.83281 0.99134 1.20026 0.79725 0.87348 0.84010 1.90671 1.57207 1.16838 1.76232 1.22391 0.95429 0.92984 0.92709 1.88111 1.67492 1.36687 1.34257 1.23792 0.94920 0.97091 0.84318 1.23529 0.96823 1.02750 0.96464 1.22680 0.96721 1.02215 0.96291 1.23188 0.96341 1.02684 0.95153 0.96928 0.88733 0.95090 0.92619 0.93196 0.93171 0.90630 0.91082 0.90941 0.89690 0.89070 0.91446 0.90167 0.90843 0.91107 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.95 37.16 0.33 -3.22 16 2 C 0.26 6.75 2.64 -69.09 -0.18 6.56 16 3 H 0.06 1.94 6.90 -51.92 -0.36 1.58 16 4 C -0.53 -14.41 8.37 -34.44 -0.29 -14.70 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.59 -12.96 2.75 -175.27 -0.48 -13.44 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.50 11.04 7.75 -10.98 -0.09 10.95 16 15 O -0.53 -14.25 15.83 -14.35 -0.23 -14.48 16 16 C 0.04 0.72 4.82 36.01 0.17 0.90 16 17 O -0.35 -5.94 9.89 -55.14 -0.55 -6.49 16 18 C 0.06 0.69 4.29 -25.91 -0.11 0.58 16 19 C -0.16 -1.66 7.93 -25.82 -0.20 -1.86 16 20 C -0.14 -1.24 8.09 -25.83 -0.21 -1.44 16 21 C -0.14 -1.46 7.91 -25.92 -0.21 -1.67 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 24 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 28 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 29 H 0.07 0.94 7.40 -51.93 -0.38 0.56 16 30 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 31 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -32.61 303.15 -7.21 -39.82 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.82 Total: -1.17 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.31 Total: -0.23 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.14 Total: -38.20 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.77 Total: -20.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.61 -7.21 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716906017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.205 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds