Wall clock time and date at job start Mon Mar 30 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 O 1.42903 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.42898 * 113.99905 * 179.97438 * 17 16 14 19 19 C 1.53790 * 113.61319 * 249.13393 * 18 17 16 20 20 C 1.53952 * 87.01856 * 220.04812 * 19 18 17 21 21 C 1.53782 * 113.61619 * 151.52723 * 18 17 16 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 27 27 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 28 28 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 29 29 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 30 30 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 31 31 H 1.09007 * 112.85462 * 20.32862 * 18 17 16 32 32 H 1.08993 * 113.61101 * 334.56530 * 19 18 17 33 33 H 1.08999 * 113.61403 * 105.47084 * 19 18 17 34 34 H 1.09005 * 113.53970 * 270.81195 * 20 19 18 35 35 H 1.09003 * 113.66488 * 139.92966 * 20 19 18 36 36 H 1.08997 * 113.61520 * 254.52830 * 21 18 17 37 37 H 1.08994 * 113.61230 * 25.34433 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 8 4.0892 0.1526 4.0918 18 6 4.6171 -0.4249 5.2876 19 6 3.9916 0.1415 6.5734 20 6 5.4054 0.1044 7.1817 21 6 5.9422 0.2078 5.7443 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.4158 -2.7376 0.9718 27 1 1.6238 -2.2851 2.5003 28 1 0.6905 -2.3002 0.9847 29 1 2.4483 -1.0888 3.9070 30 1 3.9016 -1.6021 3.0167 31 1 4.6411 -1.5142 5.2569 32 1 3.5925 1.1491 6.4575 33 1 3.2902 -0.5401 7.0546 34 1 5.6445 -0.8403 7.6701 35 1 5.6391 0.9721 7.7985 36 1 6.8132 -0.4202 5.5573 37 1 6.0779 1.2331 5.4002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716906017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:01 Heat of formation + Delta-G solvation = -78.959936 kcal Electronic energy + Delta-G solvation = -17597.757190 eV Core-core repulsion = 14761.393310 eV Total energy + Delta-G solvation = -2836.363880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90283 -39.89462 -37.30953 -36.59701 -34.82394 -31.75403 -28.74610 -27.58389 -27.26128 -26.53753 -25.37080 -22.99186 -20.71876 -19.97484 -18.55348 -18.39304 -17.48343 -17.15647 -16.94663 -16.34431 -16.00042 -15.36535 -15.10132 -14.58293 -14.21468 -13.98210 -13.47779 -13.36531 -13.19922 -13.00521 -12.93180 -12.72686 -12.67816 -12.61484 -12.18181 -12.16520 -12.12206 -11.62791 -11.27738 -11.19735 -10.64061 -10.46983 -10.39224 -9.35950 -8.14578 -6.31818 1.41572 1.44604 1.51854 1.73736 2.03104 2.42684 3.07310 3.13186 3.65897 3.69609 3.79644 3.97203 4.03830 4.12365 4.31081 4.47178 4.49504 4.69665 4.79374 4.83806 4.87581 4.88045 5.02967 5.04968 5.06200 5.06955 5.24203 5.41598 5.45457 5.60463 5.65933 6.01681 6.15134 6.29658 6.75796 6.80701 7.30982 7.46637 8.89823 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044025 B = 0.004782 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.849096 B = 5854.022676 C = 5980.470738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.260 1.260 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.488 3.512 15 O -0.599 6.599 16 C 0.059 3.941 17 O -0.389 6.389 18 C 0.044 3.956 19 C -0.160 4.160 20 C -0.126 4.126 21 C -0.145 4.145 22 H 0.019 0.981 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.265 0.735 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -9.785 16.820 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.184 1.184 12 N -0.331 5.331 13 C -0.063 4.063 14 C 0.277 3.723 15 O -0.480 6.480 16 C -0.020 4.020 17 O -0.308 6.308 18 C -0.013 4.013 19 C -0.198 4.198 20 C -0.163 4.163 21 C -0.182 4.182 22 H 0.038 0.962 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.617 -8.900 16.526 19.329 hybrid contribution 0.089 0.032 -1.205 1.209 sum 4.707 -8.868 15.320 18.317 Atomic orbital electron populations 1.21876 0.96875 1.00347 0.99963 1.18559 0.91826 0.92127 0.81735 0.97808 1.21550 1.32054 1.13156 0.91072 0.91942 1.25783 0.95042 0.95649 1.02147 1.70028 1.37281 1.23932 1.24523 0.85470 0.78329 0.79048 0.77924 1.20934 1.20359 1.18415 1.48215 1.48945 1.13691 1.22236 1.21906 1.01945 0.79940 1.02516 1.21214 0.78743 0.86897 0.85480 1.90633 1.59517 1.19937 1.77931 1.22334 0.97133 0.92274 0.90277 1.88085 1.68071 1.38472 1.36147 1.24247 0.95401 0.98770 0.82848 1.23510 0.98246 1.01888 0.96123 1.22675 0.94776 1.03776 0.95077 1.23237 0.96672 1.01564 0.96752 0.96168 0.91380 0.92917 0.92619 0.92188 0.88358 0.90798 0.87381 0.87828 0.86696 0.91321 0.89486 0.87636 0.90332 0.89704 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16 2 C 0.26 13.94 2.64 44.24 0.12 14.05 16 3 H 0.00 0.26 6.90 -2.38 -0.02 0.24 16 4 C -0.54 -29.86 8.37 25.60 0.21 -29.64 16 5 H 0.06 3.32 7.65 -2.91 -0.02 3.29 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 8 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 N -0.60 -25.87 2.75 -826.81 -2.28 -28.15 16 13 C 0.08 2.36 9.48 127.77 1.21 3.58 16 14 C 0.49 21.49 7.75 87.66 0.68 22.17 16 15 O -0.60 -33.71 15.83 16.01 0.25 -33.46 16 16 C 0.06 1.75 4.82 71.24 0.34 2.09 16 17 O -0.39 -12.92 9.89 -129.94 -1.28 -14.20 16 18 C 0.04 0.97 4.29 31.12 0.13 1.10 16 19 C -0.16 -3.00 7.93 31.18 0.25 -2.76 16 20 C -0.13 -1.85 8.09 31.18 0.25 -1.60 16 21 C -0.14 -2.89 7.91 31.12 0.25 -2.64 16 22 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 24 H 0.05 2.29 6.66 -2.39 -0.02 2.28 16 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 2.00 6.44 -2.38 -0.02 1.98 16 28 H 0.07 2.25 6.43 -2.39 -0.02 2.23 16 29 H 0.11 2.39 7.40 -2.38 -0.02 2.37 16 30 H 0.10 2.43 8.11 -2.39 -0.02 2.41 16 31 H 0.12 1.79 7.88 -2.38 -0.02 1.77 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -75.86 303.15 4.54 -71.32 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.04 Total: 11.06 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.54 Total: 1.71 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.03 Total: -81.86 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.03 Total: -47.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.86 4.54 -71.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716906017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.642 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds