Wall clock time and date at job start Mon Mar 30 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 O 1.42905 * 109.46871 * 179.97438 * 16 15 13 18 18 C 1.42900 * 113.99981 * 179.97438 * 17 16 15 19 19 C 1.53777 * 113.61638 * 249.13757 * 18 17 16 20 20 C 1.53949 * 87.02209 * 220.04931 * 19 18 17 21 21 C 1.53781 * 113.60994 * 151.53299 * 18 17 16 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 28 28 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 29 29 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 30 30 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 31 31 H 1.08995 * 112.84746 * 20.33717 * 18 17 16 32 32 H 1.09005 * 113.61605 * 334.57146 * 19 18 17 33 33 H 1.09003 * 113.60937 * 105.47345 * 19 18 17 34 34 H 1.08997 * 113.54184 * 270.81182 * 20 19 18 35 35 H 1.09003 * 113.66860 * 139.93405 * 20 19 18 36 36 H 1.09003 * 113.61130 * 254.52657 * 21 18 17 37 37 H 1.09002 * 113.61877 * 25.34972 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 8 3.1769 -0.4189 5.9257 18 6 3.2632 0.4144 7.0834 19 6 4.7066 0.7025 7.5288 20 6 4.2076 0.5381 8.9759 21 6 3.0882 -0.3494 8.4066 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 1.9776 -1.5506 3.8326 28 1 3.6492 -1.1202 3.3980 29 1 3.3726 1.0773 4.5141 30 1 1.7011 0.6461 4.9483 31 1 2.6426 1.3074 7.0092 32 1 5.4191 -0.0636 7.2229 33 1 5.0426 1.7125 7.2939 34 1 3.8463 1.4657 9.4198 35 1 4.9042 0.0024 9.6207 36 1 2.1195 -0.1873 8.8794 37 1 3.3560 -1.4039 8.3408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716943042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:58 Heat of formation + Delta-G solvation = -79.468427 kcal Electronic energy + Delta-G solvation = -16961.032242 eV Core-core repulsion = 14124.646312 eV Total energy + Delta-G solvation = -2836.385930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43770 -38.80757 -36.14708 -34.78536 -32.40966 -31.18610 -28.67822 -25.83678 -25.27458 -24.97304 -23.43417 -20.86256 -19.82749 -19.31926 -17.51970 -16.68337 -15.88264 -15.70827 -15.50081 -15.11603 -14.37989 -14.16749 -14.09905 -12.91926 -12.77978 -12.62956 -12.57690 -12.31819 -11.72109 -11.58615 -11.42339 -11.11547 -10.98497 -10.95712 -10.76223 -10.68507 -10.55711 -10.30628 -10.23483 -9.40631 -9.07196 -9.02709 -8.54939 -7.91447 -6.12476 -4.21798 3.24695 3.31049 3.32921 3.39433 3.49742 4.25813 4.41072 4.42065 4.52824 4.68953 4.75626 5.11088 5.19660 5.23306 5.25925 5.47570 5.55993 5.58821 5.65735 5.74885 5.81173 5.93048 5.99877 6.04169 6.15824 6.82647 6.96770 7.15276 7.27917 7.45928 7.56064 7.69544 7.91467 8.15018 8.66424 8.77655 9.12203 9.45842 10.93563 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.003631 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.491613 B = 7708.533185 C = 7865.982097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.560 6.560 15 C -0.141 4.141 16 C 0.079 3.921 17 O -0.380 6.380 18 C 0.063 3.937 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.014 0.986 23 H 0.090 0.910 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.390 0.610 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -3.129 17.665 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.355 5.355 13 C 0.289 3.711 14 O -0.440 6.440 15 C -0.181 4.181 16 C 0.002 3.998 17 O -0.299 6.299 18 C 0.005 3.995 19 C -0.197 4.197 20 C -0.180 4.180 21 C -0.175 4.175 22 H 0.033 0.967 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.250 -2.355 17.510 18.172 hybrid contribution 0.332 -0.660 -0.954 1.207 sum 4.582 -3.015 16.556 17.441 Atomic orbital electron populations 1.22078 0.98466 0.99128 1.00898 1.18750 0.91051 0.94002 0.80042 0.93383 1.21233 1.32433 1.13252 0.90348 0.92033 1.24901 0.94792 0.94982 0.99092 1.69907 1.35836 1.22516 1.23880 0.86434 0.78595 0.79845 0.82136 1.20553 1.19824 1.21067 1.46516 1.64903 1.13630 1.10492 1.20229 0.78690 0.87423 0.84750 1.90656 1.51742 1.16225 1.85352 1.21518 1.03812 0.99724 0.93047 1.22187 0.99059 0.94425 0.84141 1.87863 1.86515 1.37324 1.18175 1.23693 0.96523 0.94157 0.85114 1.23525 0.97874 1.02359 0.95896 1.22683 0.98644 1.00201 0.96443 1.23203 0.99174 1.00297 0.94824 0.96672 0.89134 0.95446 0.92571 0.77772 0.88767 0.88701 0.92488 0.92534 0.89550 0.89264 0.91324 0.90084 0.90886 0.91135 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.78 2.56 -69.09 -0.18 6.60 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.03 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.71 -14.86 5.07 -54.93 -0.28 -15.14 16 13 C 0.50 10.09 7.79 -10.98 -0.09 10.00 16 14 O -0.56 -13.39 15.65 5.56 0.09 -13.30 16 15 C -0.14 -2.09 6.07 -27.88 -0.17 -2.26 16 16 C 0.08 1.15 5.07 37.16 0.19 1.34 16 17 O -0.38 -5.14 10.35 -35.23 -0.36 -5.50 16 18 C 0.06 0.69 4.29 -25.92 -0.11 0.58 16 19 C -0.16 -1.51 7.93 -25.83 -0.20 -1.71 16 20 C -0.14 -1.11 8.09 -25.83 -0.21 -1.32 16 21 C -0.14 -1.24 7.91 -25.92 -0.21 -1.44 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -30.56 309.99 -7.38 -37.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.08 Total: 4.54 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.02 Total: -4.46 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.35 Total: -39.57 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.28 Total: -18.81 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.56 -7.38 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716943042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.530 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds