Wall clock time and date at job start Mon Mar 30 2020 03:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 O 1.42905 * 109.46871 * 179.97438 * 16 15 13 18 18 C 1.42900 * 113.99981 * 179.97438 * 17 16 15 19 19 C 1.53777 * 113.61638 * 249.13757 * 18 17 16 20 20 C 1.53949 * 87.02209 * 220.04931 * 19 18 17 21 21 C 1.53781 * 113.60994 * 151.53299 * 18 17 16 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 28 28 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 29 29 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 30 30 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 31 31 H 1.08995 * 112.84746 * 20.33717 * 18 17 16 32 32 H 1.09005 * 113.61605 * 334.57146 * 19 18 17 33 33 H 1.09003 * 113.60937 * 105.47345 * 19 18 17 34 34 H 1.08997 * 113.54184 * 270.81182 * 20 19 18 35 35 H 1.09003 * 113.66860 * 139.93405 * 20 19 18 36 36 H 1.09003 * 113.61130 * 254.52657 * 21 18 17 37 37 H 1.09002 * 113.61877 * 25.34972 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 8 3.1769 -0.4189 5.9257 18 6 3.2632 0.4144 7.0834 19 6 4.7066 0.7025 7.5288 20 6 4.2076 0.5381 8.9759 21 6 3.0882 -0.3494 8.4066 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 1.9776 -1.5506 3.8326 28 1 3.6492 -1.1202 3.3980 29 1 3.3726 1.0773 4.5141 30 1 1.7011 0.6461 4.9483 31 1 2.6426 1.3074 7.0092 32 1 5.4191 -0.0636 7.2229 33 1 5.0426 1.7125 7.2939 34 1 3.8463 1.4657 9.4198 35 1 4.9042 0.0024 9.6207 36 1 2.1195 -0.1873 8.8794 37 1 3.3560 -1.4039 8.3408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716943042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:58 Heat of formation + Delta-G solvation = -99.595700 kcal Electronic energy + Delta-G solvation = -16961.905026 eV Core-core repulsion = 14124.646312 eV Total energy + Delta-G solvation = -2837.258714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72982 -40.04096 -37.20356 -36.63285 -34.34318 -32.58854 -30.51440 -27.35385 -26.55969 -25.89831 -24.69265 -22.63888 -21.16042 -20.52035 -18.97003 -18.15781 -17.25287 -17.09476 -16.99196 -16.44039 -15.85294 -15.60062 -15.31130 -14.61685 -14.40495 -13.94221 -13.64659 -13.46976 -13.33562 -12.98449 -12.88204 -12.75290 -12.45008 -12.41418 -12.26685 -12.12950 -11.94907 -11.56254 -11.29415 -11.11985 -10.78192 -10.58558 -10.37544 -9.76652 -8.18252 -6.35951 1.45324 1.45751 1.56691 1.78514 2.21780 2.44064 3.06344 3.12862 3.68702 3.71606 3.83267 3.95547 3.97585 4.10323 4.29497 4.42001 4.57746 4.75817 4.81853 4.84107 4.85956 4.86912 4.92097 5.05072 5.06161 5.09037 5.24755 5.41851 5.42869 5.60444 5.68304 5.89542 6.09256 6.28081 6.72155 6.93973 7.31581 7.53680 8.88186 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062417 B = 0.003631 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.491613 B = 7708.533185 C = 7865.982097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.604 6.604 15 C -0.125 4.125 16 C 0.085 3.915 17 O -0.386 6.386 18 C 0.043 3.957 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.134 4.134 22 H 0.012 0.988 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.266 0.734 26 H 0.407 0.593 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -4.972 18.581 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.353 5.353 13 C 0.289 3.711 14 O -0.486 6.486 15 C -0.164 4.164 16 C 0.008 3.992 17 O -0.305 6.305 18 C -0.014 4.014 19 C -0.199 4.199 20 C -0.168 4.168 21 C -0.172 4.172 22 H 0.031 0.969 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.243 0.757 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.137 -4.239 18.461 19.626 hybrid contribution 0.064 -0.034 -1.171 1.173 sum 5.201 -4.273 17.290 18.554 Atomic orbital electron populations 1.21903 0.98278 0.99546 0.99587 1.18359 0.91183 0.91946 0.82022 0.98403 1.21572 1.32614 1.13643 0.90807 0.90727 1.25831 0.94843 0.95613 1.02417 1.70058 1.36964 1.24013 1.24638 0.85316 0.77743 0.79208 0.77896 1.20359 1.18292 1.20953 1.46273 1.64987 1.14379 1.09646 1.21095 0.77408 0.86963 0.85671 1.90639 1.53439 1.18474 1.86094 1.21413 1.05286 0.99603 0.90146 1.21997 0.98342 0.94071 0.84793 1.87839 1.86505 1.37827 1.18346 1.24069 0.97798 0.94610 0.84933 1.23540 0.96841 1.02307 0.97206 1.22677 0.98086 1.00563 0.95488 1.23212 1.00250 1.00192 0.93506 0.96891 0.91494 0.93958 0.92530 0.75735 0.86149 0.86416 0.93756 0.93436 0.89464 0.89689 0.91190 0.88913 0.89584 0.90175 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.04 2.56 44.24 0.11 14.15 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 4 C -0.55 -29.12 8.73 25.60 0.22 -28.89 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 9 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.70 -29.16 5.07 -446.09 -2.26 -31.42 16 13 C 0.50 19.88 7.79 87.66 0.68 20.56 16 14 O -0.60 -29.58 15.65 -3.04 -0.05 -29.63 16 15 C -0.12 -3.47 6.07 29.85 0.18 -3.29 16 16 C 0.09 2.42 5.07 71.98 0.37 2.79 16 17 O -0.39 -9.90 10.35 -148.98 -1.54 -11.44 16 18 C 0.04 0.90 4.29 31.12 0.13 1.03 16 19 C -0.16 -2.83 7.93 31.18 0.25 -2.59 16 20 C -0.13 -1.73 8.09 31.18 0.25 -1.48 16 21 C -0.13 -2.15 7.91 31.12 0.25 -1.90 16 22 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.41 13.96 8.54 -92.71 -0.79 13.17 16 27 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.09 1.76 7.88 -2.39 -0.02 1.74 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -66.56 309.99 2.23 -64.33 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.25 Total: 21.57 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 3.56 Total: -4.67 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.02 Total: -84.15 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.59 Total: -41.08 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.56 2.23 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716943042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.268 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds