Wall clock time and date at job start Mon Mar 30 2020 03:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47519 * 2 1 4 4 C 1.46500 * 119.99929 * 270.52374 * 3 2 1 5 5 C 1.50700 * 109.46902 * 269.99758 * 4 3 2 6 6 H 1.08000 * 120.00401 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99672 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99714 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47067 * 60.00262 * 9 7 5 11 11 H 1.48505 * 109.47044 * 179.97438 * 9 7 5 12 12 H 1.48486 * 109.47345 * 299.99805 * 9 7 5 13 13 C 1.34773 * 119.99848 * 90.52610 * 3 2 1 14 14 O 1.21286 * 119.99944 * 184.49058 * 13 3 2 15 15 C 1.50699 * 120.00058 * 4.48276 * 13 3 2 16 16 H 1.08994 * 110.33654 * 307.18960 * 15 13 3 17 17 C 1.54481 * 110.36919 * 69.44482 * 15 13 3 18 18 C 1.54503 * 104.18690 * 142.73847 * 17 15 13 19 19 H 1.08997 * 110.51605 * 241.41994 * 18 17 15 20 20 C 1.53002 * 110.51038 * 118.71083 * 18 17 15 21 21 C 1.54800 * 103.91214 * 0.10026 * 18 17 15 22 22 O 1.44423 * 104.80113 * 335.91527 * 21 18 17 23 23 H 1.09000 * 109.46735 * 299.99942 * 1 2 3 24 24 H 1.08997 * 109.47228 * 59.99310 * 1 2 3 25 25 H 1.08991 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46735 * 240.00058 * 2 1 3 27 27 H 1.08997 * 109.47228 * 120.00690 * 2 1 3 28 28 H 1.09000 * 109.47017 * 29.99993 * 4 3 2 29 29 H 1.08997 * 109.47068 * 150.00192 * 4 3 2 30 30 H 0.97000 * 120.00022 * 180.02562 * 8 7 5 31 31 H 1.09000 * 110.50968 * 261.45681 * 17 15 13 32 32 H 1.09006 * 110.51189 * 24.02316 * 17 15 13 33 33 H 1.09001 * 109.47155 * 60.00322 * 20 18 17 34 34 H 1.09008 * 109.46972 * 179.97438 * 20 18 17 35 35 H 1.08997 * 109.47259 * 299.99705 * 20 18 17 36 36 H 1.08998 * 110.30878 * 217.11622 * 21 18 17 37 37 H 1.09000 * 110.52889 * 94.82514 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2517 2.0756 -1.2687 5 6 3.6712 1.8401 -1.7166 6 1 4.3332 1.2334 -1.1166 7 6 4.1247 2.3991 -2.8926 8 7 3.3184 3.1374 -3.6235 9 14 5.8840 2.1066 -3.4482 10 1 6.1090 0.6504 -3.6330 11 1 6.1205 2.8106 -4.7342 12 1 6.8207 2.6256 -2.4197 13 6 2.2532 2.0129 1.1671 14 8 2.5791 3.1811 1.1695 15 6 2.1105 1.2677 2.4692 16 1 1.1334 0.7883 2.5262 17 6 3.2342 0.2175 2.6136 18 6 3.5909 0.2488 4.1166 19 1 4.6302 0.5458 4.2565 20 6 3.3311 -1.1160 4.7577 21 6 2.6353 1.3158 4.7038 22 8 2.2986 2.1651 3.5852 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5643 1.6938 -2.0236 29 1 2.0859 3.1444 -1.1337 30 1 3.6373 3.5304 -4.4510 31 1 2.8729 -0.7702 2.3272 32 1 4.0979 0.4969 2.0102 33 1 3.9428 -1.8714 4.2644 34 1 3.5885 -1.0751 5.8162 35 1 2.2777 -1.3738 4.6493 36 1 3.1416 1.8916 5.4785 37 1 1.7384 0.8454 5.1066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718501026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:58 Heat of formation + Delta-G solvation = -110.876092 kcal Electronic energy + Delta-G solvation = -18222.723445 eV Core-core repulsion = 15384.975576 eV Total energy + Delta-G solvation = -2837.747868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46146 -39.55262 -37.04699 -34.96505 -34.48884 -31.86234 -31.29340 -28.87659 -27.10730 -25.59535 -24.62433 -23.42853 -21.42571 -20.25613 -18.62208 -18.19374 -17.64716 -16.92682 -16.57157 -16.19286 -15.76667 -15.45622 -14.91397 -14.76599 -14.31735 -14.23321 -13.83088 -13.68002 -13.31239 -13.22970 -13.06897 -12.68627 -12.65218 -12.54871 -12.18095 -12.12613 -11.92507 -11.76179 -11.69858 -11.48404 -10.93889 -10.65962 -10.47519 -9.49323 -8.24063 -6.39450 1.34909 1.39887 1.46964 1.69503 2.04920 2.38102 3.04938 3.08657 3.40174 3.63756 3.81071 3.93602 4.07302 4.16396 4.28455 4.41033 4.54040 4.55690 4.68498 4.76418 4.85704 4.90875 4.92973 4.96331 5.02801 5.13696 5.19054 5.25290 5.37831 5.40649 5.54597 5.74161 5.86683 6.03710 6.66819 6.72978 7.24727 7.41514 8.83275 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.006851 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.874062 B = 4086.252824 C = 4385.182665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.256 1.256 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.593 6.593 15 C 0.068 3.932 16 H 0.121 0.879 17 C -0.138 4.138 18 C -0.120 4.120 19 H 0.078 0.922 20 C -0.136 4.136 21 C 0.038 3.962 22 O -0.389 6.389 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.027 0.973 29 H -0.008 1.008 30 H 0.268 0.732 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -14.252 15.071 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.286 3.714 14 O -0.474 6.474 15 C 0.007 3.993 16 H 0.138 0.862 17 C -0.176 4.176 18 C -0.139 4.139 19 H 0.097 0.903 20 C -0.193 4.193 21 C -0.038 4.038 22 O -0.308 6.308 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.045 0.955 29 H 0.011 0.989 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.081 -13.330 14.888 20.219 hybrid contribution 0.860 0.573 -0.871 1.351 sum -2.221 -12.757 14.017 19.082 Atomic orbital electron populations 1.22185 0.94510 1.03838 1.01631 1.21968 0.95449 0.81147 1.04509 1.48178 1.63617 1.15331 1.05638 1.18742 0.95689 0.91411 0.80169 1.21681 0.97898 1.32144 1.06677 0.92630 1.25896 1.02494 0.94371 0.96449 1.70052 1.37851 1.33901 1.14998 0.85453 0.78731 0.79220 0.77333 1.18070 1.20256 1.20483 1.21071 0.77023 0.86942 0.86407 1.90636 1.49408 1.19393 1.87973 1.22949 1.01913 0.89841 0.84559 0.86187 1.23082 0.97068 0.99375 0.98058 1.22591 1.00470 0.97922 0.92927 0.90321 1.21789 1.02949 0.93447 1.01083 1.23938 0.98851 0.92039 0.88962 1.89247 1.91029 1.31181 1.19304 0.92494 0.94236 0.87947 0.90350 0.87745 0.95510 0.98948 0.92345 0.86115 0.92980 0.91460 0.90950 0.90964 0.88109 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.20 71.98 0.73 -3.31 16 2 C 0.09 2.76 5.79 86.38 0.50 3.26 16 3 N -0.60 -26.32 2.46 -826.17 -2.03 -28.35 16 4 C 0.26 14.63 5.20 85.63 0.45 15.08 16 5 C -0.55 -32.16 9.39 25.60 0.24 -31.92 16 6 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 10 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.50 22.87 6.93 87.66 0.61 23.47 16 14 O -0.59 -34.84 16.11 15.28 0.25 -34.59 16 15 C 0.07 2.20 2.77 30.35 0.08 2.28 16 16 H 0.12 2.99 7.12 -2.39 -0.02 2.97 16 17 C -0.14 -3.48 5.36 31.61 0.17 -3.31 16 18 C -0.12 -2.36 3.73 -9.67 -0.04 -2.40 16 19 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 20 C -0.14 -1.60 8.98 71.98 0.65 -0.95 16 21 C 0.04 0.83 7.19 72.60 0.52 1.36 16 22 O -0.39 -13.72 10.92 -130.65 -1.43 -15.14 16 23 H 0.06 1.34 7.52 -2.39 -0.02 1.33 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.48 8.08 -2.39 -0.02 2.46 16 27 H 0.10 2.38 4.45 -2.39 -0.01 2.36 16 28 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 29 H -0.01 -0.50 7.36 -2.39 -0.02 -0.52 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 31 H 0.12 2.14 6.21 -2.39 -0.01 2.13 16 32 H 0.05 1.66 7.86 -2.38 -0.02 1.64 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.43 7.84 -2.39 -0.02 1.41 16 Total: -1.00 -80.86 302.21 4.51 -76.35 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.04 Total: 6.87 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 4.37 Total: 4.43 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.74 Total: -85.42 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -1.18 Total: -49.73 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -80.86 4.51 -76.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718501026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.527 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds