Wall clock time and date at job start Mon Mar 30 2020 03:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46757 * 2 1 4 4 C 1.37095 * 119.99762 * 264.17284 * 3 2 1 5 5 H 1.08008 * 119.99922 * 191.60595 * 4 3 2 6 6 C 1.38954 * 120.00173 * 11.60861 * 4 3 2 7 7 N 1.31404 * 119.99973 * 28.30792 * 6 4 3 8 8 Si 1.86803 * 119.99988 * 208.31032 * 6 4 3 9 9 H 1.48501 * 109.47206 * 94.97881 * 8 6 4 10 10 H 1.48496 * 109.46879 * 214.97953 * 8 6 4 11 11 H 1.48500 * 109.46955 * 334.97855 * 8 6 4 12 12 C 1.34770 * 120.00114 * 84.18106 * 3 2 1 13 13 O 1.21297 * 120.00029 * 3.69891 * 12 3 2 14 14 C 1.50699 * 120.00006 * 183.70482 * 12 3 2 15 15 H 1.09002 * 109.47351 * 320.04442 * 14 12 3 16 16 C 1.52996 * 109.47341 * 80.04414 * 14 12 3 17 17 C 1.53006 * 109.47180 * 200.04617 * 14 12 3 18 18 H 1.09004 * 110.32771 * 300.69869 * 17 14 12 19 19 C 1.54478 * 110.37274 * 178.45336 * 17 14 12 20 20 C 1.54516 * 104.05978 * 217.07898 * 19 17 14 21 21 C 1.54479 * 104.06305 * 359.97438 * 20 19 17 22 22 O 1.44426 * 110.37111 * 62.94874 * 17 14 12 23 23 H 1.09006 * 109.47191 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47493 * 300.00228 * 1 2 3 25 25 H 1.09004 * 109.47231 * 60.00184 * 1 2 3 26 26 H 1.08994 * 109.47493 * 239.99772 * 2 1 3 27 27 H 1.09004 * 109.47231 * 119.99816 * 2 1 3 28 28 H 0.96996 * 120.00284 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47251 * 297.63672 * 16 14 12 30 30 H 1.09004 * 109.47132 * 57.63583 * 16 14 12 31 31 H 1.08999 * 109.47206 * 177.63441 * 16 14 12 32 32 H 1.08999 * 110.51101 * 335.71830 * 19 17 14 33 33 H 1.08998 * 110.51602 * 98.29594 * 19 17 14 34 34 H 1.09000 * 110.50995 * 118.64105 * 20 19 17 35 35 H 1.08997 * 110.50908 * 241.35152 * 20 19 17 36 36 H 1.08999 * 110.37124 * 142.80839 * 21 20 19 37 37 H 1.08993 * 110.37247 * 265.03961 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3603 1.9874 -1.1812 5 1 2.8922 2.9274 -1.1716 6 6 2.0227 1.3924 -2.3907 7 7 0.9643 0.6177 -2.4690 8 14 3.0737 1.6938 -3.9053 9 1 4.0640 0.5963 -4.0471 10 1 2.2058 1.7360 -5.1095 11 1 3.7867 2.9886 -3.7633 12 6 2.1312 2.0561 1.1611 13 8 1.8930 1.4991 2.2120 14 6 2.5535 3.5027 1.1539 15 1 3.3385 3.6484 0.4119 16 6 1.3519 4.3830 0.8046 17 6 3.0820 3.8867 2.5375 18 1 2.3111 3.7344 3.2930 19 6 3.5572 5.3565 2.5428 20 6 4.8052 5.3443 3.4536 21 6 4.9360 3.8686 3.8914 22 8 4.2596 3.1144 2.8580 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.7288 0.2020 -3.3131 29 1 1.0014 4.1383 -0.1981 30 1 0.5510 4.2062 1.5226 31 1 1.6470 5.4316 0.8405 32 1 3.8230 5.6756 1.5350 33 1 2.7859 6.0059 2.9569 34 1 5.6880 5.6572 2.8961 35 1 4.6518 5.9872 4.3203 36 1 5.9858 3.5803 3.9449 37 1 4.4512 3.7144 4.8553 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720608614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:12 Heat of formation + Delta-G solvation = -79.361223 kcal Electronic energy + Delta-G solvation = -18577.780732 eV Core-core repulsion = 15741.399451 eV Total energy + Delta-G solvation = -2836.381281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46034 -38.07461 -34.92431 -33.24304 -31.57912 -31.47819 -29.55087 -27.45053 -24.81862 -23.99015 -22.49266 -21.36010 -20.03226 -18.87013 -16.92605 -16.40937 -15.51994 -15.22854 -15.02518 -14.28653 -14.12733 -13.65724 -13.41428 -12.84759 -12.67847 -12.22400 -11.90652 -11.80789 -11.56543 -11.38251 -11.12701 -11.07941 -10.97095 -10.70525 -10.59970 -10.55416 -10.40289 -10.23441 -10.10672 -9.52313 -9.22840 -8.87892 -8.16194 -7.70212 -6.34773 -3.78691 3.13279 3.25139 3.26533 4.01490 4.12356 4.29700 4.73211 4.85419 5.04226 5.05960 5.19808 5.47387 5.56713 5.74116 5.85792 5.87362 5.94143 5.99664 6.08622 6.14809 6.22667 6.36205 6.45806 6.67259 6.74048 6.80491 6.84501 6.91497 7.08912 7.32359 7.40341 7.43600 7.82321 7.89893 8.51300 9.15283 9.64711 10.06820 10.63786 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.008016 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.040076 B = 3491.992271 C = 4001.565477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 N -0.441 5.441 4 C -0.337 4.337 5 H 0.099 0.901 6 C 0.040 3.960 7 N -0.850 5.850 8 Si 0.908 3.092 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.467 3.533 13 O -0.605 6.605 14 C -0.089 4.089 15 H 0.091 0.909 16 C -0.132 4.132 17 C 0.098 3.902 18 H 0.071 0.929 19 C -0.151 4.151 20 C -0.154 4.154 21 C 0.042 3.958 22 O -0.357 6.357 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 7.929 4.872 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 N -0.159 5.159 4 C -0.464 4.464 5 H 0.117 0.883 6 C -0.166 4.166 7 N -0.488 5.488 8 Si 0.734 3.266 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.256 3.744 13 O -0.492 6.492 14 C -0.111 4.111 15 H 0.109 0.891 16 C -0.190 4.190 17 C 0.039 3.961 18 H 0.089 0.911 19 C -0.189 4.189 20 C -0.192 4.192 21 C -0.036 4.036 22 O -0.276 6.276 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.631 7.302 5.106 9.621 hybrid contribution 0.465 0.293 -0.837 1.001 sum 4.095 7.594 4.269 9.626 Atomic orbital electron populations 1.22129 0.96783 0.99469 1.02366 1.20987 0.94427 0.83372 0.99593 1.43757 1.55721 1.11056 1.05353 1.19619 1.35542 1.08548 0.82691 0.88311 1.25129 0.95311 0.97281 0.98833 1.70117 1.20346 1.31699 1.26623 0.86230 0.80329 0.78969 0.81051 1.20463 1.21165 1.19457 1.19787 0.82984 0.87799 0.83840 1.90509 1.57152 1.70077 1.31454 1.21073 0.99170 0.95135 0.95681 0.89051 1.21596 0.96634 0.97596 1.03200 1.22805 0.88314 0.88010 0.96930 0.91094 1.23039 0.97297 0.97856 1.00687 1.22928 0.98831 0.97714 0.99757 1.23367 0.97918 0.90178 0.92093 1.89324 1.37250 1.45456 1.55552 0.95084 0.95589 0.88378 0.90228 0.94372 0.92245 0.90431 0.92982 0.92872 0.90546 0.90812 0.90999 0.91073 0.89758 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.72 37.16 0.36 -3.23 16 2 C 0.14 3.56 5.28 -4.04 -0.02 3.54 16 3 N -0.44 -11.48 2.64 -114.81 -0.30 -11.79 16 4 C -0.34 -8.55 8.46 -14.93 -0.13 -8.67 16 5 H 0.10 2.40 6.01 -52.48 -0.32 2.08 16 6 C 0.04 0.99 4.74 -17.47 -0.08 0.90 16 7 N -0.85 -21.60 8.74 55.50 0.48 -21.12 16 8 Si 0.91 19.37 29.64 -169.99 -5.04 14.34 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 12 C 0.47 11.85 6.53 -10.99 -0.07 11.77 16 13 O -0.61 -16.90 15.59 5.40 0.08 -16.81 16 14 C -0.09 -1.84 1.60 -91.77 -0.15 -1.98 16 15 H 0.09 1.90 6.46 -51.93 -0.34 1.57 16 16 C -0.13 -2.37 8.94 37.16 0.33 -2.04 16 17 C 0.10 1.80 2.30 -25.95 -0.06 1.74 16 18 H 0.07 1.39 7.90 -51.93 -0.41 0.97 16 19 C -0.15 -2.08 5.53 -25.16 -0.14 -2.22 16 20 C -0.15 -1.87 7.09 -25.16 -0.18 -2.05 16 21 C 0.04 0.61 7.63 37.93 0.29 0.90 16 22 O -0.36 -7.19 11.00 -35.38 -0.39 -7.58 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 2.51 5.92 -51.93 -0.31 2.20 16 26 H 0.08 2.07 6.23 -51.93 -0.32 1.75 16 27 H 0.04 0.98 7.55 -51.93 -0.39 0.59 16 28 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.76 7.14 -51.93 -0.37 0.39 16 32 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -29.70 292.62 -6.36 -36.05 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.76 Total: 3.83 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 0.16 Total: -1.34 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.18 Total: -32.90 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.30 Total: -24.39 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.04 Total: 14.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.70 -6.36 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720608614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds