Wall clock time and date at job start Mon Mar 30 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46886 * 2 1 4 4 C 1.37099 * 119.99712 * 86.41309 * 3 2 1 5 5 H 1.08001 * 120.00039 * 172.66672 * 4 3 2 6 6 C 1.38947 * 119.99813 * 352.66347 * 4 3 2 7 7 N 1.31407 * 120.00364 * 344.59814 * 6 4 3 8 8 Si 1.86802 * 119.99781 * 164.59411 * 6 4 3 9 9 H 1.48503 * 109.47454 * 270.00372 * 8 6 4 10 10 H 1.48506 * 109.47132 * 30.00012 * 8 6 4 11 11 H 1.48501 * 109.47489 * 150.00185 * 8 6 4 12 12 C 1.34770 * 120.00241 * 266.40849 * 3 2 1 13 13 O 1.21299 * 120.00003 * 5.94072 * 12 3 2 14 14 C 1.50698 * 120.00176 * 185.93294 * 12 3 2 15 15 H 1.09000 * 109.46987 * 311.53216 * 14 12 3 16 16 C 1.52998 * 109.47192 * 71.53274 * 14 12 3 17 17 C 1.52999 * 109.47058 * 191.53557 * 14 12 3 18 18 H 1.09001 * 109.87733 * 59.29858 * 17 14 12 19 19 C 1.54104 * 109.87559 * 180.30833 * 17 14 12 20 20 C 1.54813 * 104.18776 * 121.45301 * 19 17 14 21 21 C 1.54989 * 102.09523 * 20.87645 * 20 19 17 22 22 O 1.43746 * 109.87966 * 298.29057 * 17 14 12 23 23 H 1.09001 * 109.47024 * 306.11263 * 1 2 3 24 24 H 1.08997 * 109.47812 * 66.11257 * 1 2 3 25 25 H 1.09001 * 109.47038 * 186.11711 * 1 2 3 26 26 H 1.09001 * 109.46594 * 240.00666 * 2 1 3 27 27 H 1.08995 * 109.47354 * 120.00522 * 2 1 3 28 28 H 0.97009 * 120.00133 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46974 * 65.42811 * 16 14 12 30 30 H 1.09000 * 109.47403 * 185.43021 * 16 14 12 31 31 H 1.08998 * 109.46922 * 305.42931 * 16 14 12 32 32 H 1.09001 * 110.48533 * 240.12637 * 19 17 14 33 33 H 1.08995 * 110.49169 * 2.64311 * 19 17 14 34 34 H 1.09004 * 110.90921 * 139.07625 * 20 19 17 35 35 H 1.09000 * 110.90396 * 262.64034 * 20 19 17 36 36 H 1.09004 * 110.61685 * 81.47578 * 21 20 19 37 37 H 1.08993 * 110.62009 * 204.31625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1767 2.0523 1.1850 5 1 2.6466 3.0247 1.1964 6 6 1.7327 1.4813 2.3714 7 7 0.9042 0.4619 2.3403 8 14 2.3137 2.1629 4.0107 9 1 3.5544 1.4610 4.4270 10 1 2.5895 3.6157 3.8730 11 1 1.2593 1.9542 5.0354 12 6 2.3119 1.9923 -1.1648 13 8 2.0709 1.4394 -2.2173 14 6 2.9392 3.3625 -1.1598 15 1 2.3835 4.0141 -0.4855 16 6 4.3904 3.2572 -0.6866 17 6 2.9050 3.9442 -2.5745 18 1 1.8744 4.0105 -2.9231 19 6 3.5517 5.3430 -2.5816 20 6 4.7137 5.2186 -3.5969 21 6 4.2816 3.9895 -4.4363 22 8 3.6691 3.1124 -3.4637 23 1 -0.3633 0.6057 0.8302 24 1 -0.3634 0.4161 -0.9396 25 1 -0.3633 -1.0218 0.1095 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.5939 0.0635 3.1686 29 1 4.9686 2.6851 -1.4123 30 1 4.8147 4.2566 -0.5906 31 1 4.4217 2.7548 0.2802 32 1 2.8340 6.0933 -2.9132 33 1 3.9327 5.5922 -1.5913 34 1 4.7829 6.1103 -4.2201 35 1 5.6578 5.0291 -3.0862 36 1 3.5576 4.2799 -5.1976 37 1 5.1485 3.5135 -4.8944 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720608615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:15 Heat of formation + Delta-G solvation = -69.904947 kcal Electronic energy + Delta-G solvation = -18669.565517 eV Core-core repulsion = 15833.594291 eV Total energy + Delta-G solvation = -2835.971226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.55530 -38.02918 -34.92910 -33.08103 -31.54104 -31.34166 -29.47235 -27.47615 -24.86006 -24.11040 -22.28728 -21.38840 -19.95657 -18.81374 -17.00986 -16.06307 -15.77425 -15.21019 -14.90379 -14.25431 -14.08845 -13.60454 -13.33288 -12.91969 -12.72300 -12.28708 -11.91786 -11.55808 -11.35430 -11.28963 -11.19518 -11.03684 -10.93644 -10.67761 -10.59544 -10.40692 -10.27045 -10.22455 -10.05206 -9.67272 -9.08649 -8.74873 -8.09227 -7.65811 -6.20352 -3.79422 3.12484 3.22214 3.23331 4.02745 4.10804 4.32865 4.81567 4.81651 5.07856 5.12464 5.23774 5.46154 5.54316 5.72216 5.85269 5.85999 5.93907 6.00040 6.05224 6.18987 6.39052 6.43875 6.55426 6.66064 6.78355 6.92826 6.95734 7.06663 7.20473 7.39736 7.48446 7.58221 7.87174 8.01900 8.56908 9.16626 9.68621 10.09408 10.69766 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.007934 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.392113 B = 3528.175784 C = 4223.355259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.142 3.858 3 N -0.449 5.449 4 C -0.324 4.324 5 H 0.101 0.899 6 C 0.028 3.972 7 N -0.864 5.864 8 Si 0.919 3.081 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.462 3.538 13 O -0.593 6.593 14 C -0.094 4.094 15 H 0.093 0.907 16 C -0.137 4.137 17 C 0.101 3.899 18 H 0.063 0.937 19 C -0.155 4.155 20 C -0.153 4.153 21 C 0.039 3.961 22 O -0.341 6.341 23 H 0.095 0.905 24 H 0.014 0.986 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 8.018 -4.460 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.019 3.981 3 N -0.168 5.168 4 C -0.452 4.452 5 H 0.118 0.882 6 C -0.175 4.175 7 N -0.504 5.504 8 Si 0.746 3.254 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.249 3.751 13 O -0.478 6.478 14 C -0.115 4.115 15 H 0.111 0.889 16 C -0.195 4.195 17 C 0.042 3.958 18 H 0.081 0.919 19 C -0.192 4.192 20 C -0.191 4.191 21 C -0.038 4.038 22 O -0.259 6.259 23 H 0.113 0.887 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.050 7.357 -4.788 10.127 hybrid contribution 0.129 0.587 0.993 1.161 sum 5.179 7.944 -3.795 10.214 Atomic orbital electron populations 1.22113 0.96837 0.99986 1.00361 1.21161 0.94556 0.82906 0.99501 1.43842 1.56256 1.11853 1.04855 1.19756 1.38249 1.03405 0.83798 0.88173 1.25218 0.95686 0.97053 0.99529 1.70287 1.28820 1.24099 1.27168 0.86055 0.78467 0.79084 0.81801 1.20474 1.19652 1.21057 1.19853 0.83748 0.87644 0.83810 1.90558 1.58882 1.67231 1.31099 1.21238 0.98193 0.97043 0.95029 0.88903 1.21689 0.94430 1.00968 1.02416 1.22449 0.95063 0.87920 0.90339 0.91903 1.23084 0.97728 0.97781 1.00644 1.23101 0.99111 0.98824 0.98022 1.23523 0.97136 0.90616 0.92563 1.89193 1.65904 1.29245 1.41537 0.88691 0.96725 0.95237 0.94830 0.89235 0.92486 0.92371 0.93346 0.90910 0.91180 0.90078 0.90967 0.90752 0.92970 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.38 37.16 0.35 -2.98 16 2 C 0.14 3.66 5.38 -4.04 -0.02 3.63 16 3 N -0.45 -11.63 2.63 -114.81 -0.30 -11.94 16 4 C -0.32 -8.12 8.33 -14.93 -0.12 -8.24 16 5 H 0.10 2.34 5.32 -52.49 -0.28 2.06 16 6 C 0.03 0.69 5.17 -17.47 -0.09 0.60 16 7 N -0.86 -21.99 7.49 55.50 0.42 -21.57 16 8 Si 0.92 19.25 29.58 -169.99 -5.03 14.22 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 12 C 0.46 11.64 6.81 -10.99 -0.07 11.56 16 13 O -0.59 -16.65 14.78 -13.83 -0.20 -16.86 16 14 C -0.09 -1.89 1.66 -91.77 -0.15 -2.05 16 15 H 0.09 1.81 7.12 -51.93 -0.37 1.44 16 16 C -0.14 -2.50 8.41 37.16 0.31 -2.19 16 17 C 0.10 1.84 2.76 -26.16 -0.07 1.76 16 18 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 19 C -0.15 -2.09 6.19 -25.20 -0.16 -2.24 16 20 C -0.15 -1.82 7.16 -24.73 -0.18 -2.00 16 21 C 0.04 0.55 7.72 38.21 0.29 0.85 16 22 O -0.34 -6.71 9.17 -54.60 -0.50 -7.22 16 23 H 0.09 2.50 5.93 -51.93 -0.31 2.19 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.88 7.40 -51.93 -0.38 0.49 16 27 H 0.09 2.37 6.14 -51.93 -0.32 2.05 16 28 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 29 H 0.06 1.11 7.49 -51.93 -0.39 0.72 16 30 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 31 H 0.07 1.42 6.43 -51.93 -0.33 1.08 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.04 6.24 -51.93 -0.32 0.72 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 286.02 15.07 4.31 4.31 Total: -1.00 -29.62 286.02 -6.79 -36.41 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.57 Total: 3.94 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.09 Total: -1.30 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.11 Total: -33.51 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.71 Total: -24.07 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.62 -6.79 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720608615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.498 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds