Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46886 * 2 1 4 4 C 1.37099 * 119.99712 * 86.41309 * 3 2 1 5 5 H 1.08001 * 120.00039 * 172.66672 * 4 3 2 6 6 C 1.38947 * 119.99813 * 352.66347 * 4 3 2 7 7 N 1.31407 * 120.00364 * 344.59814 * 6 4 3 8 8 Si 1.86802 * 119.99781 * 164.59411 * 6 4 3 9 9 H 1.48503 * 109.47454 * 270.00372 * 8 6 4 10 10 H 1.48506 * 109.47132 * 30.00012 * 8 6 4 11 11 H 1.48501 * 109.47489 * 150.00185 * 8 6 4 12 12 C 1.34770 * 120.00241 * 266.40849 * 3 2 1 13 13 O 1.21299 * 120.00003 * 5.94072 * 12 3 2 14 14 C 1.50698 * 120.00176 * 185.93294 * 12 3 2 15 15 H 1.09000 * 109.46987 * 311.53216 * 14 12 3 16 16 C 1.52998 * 109.47192 * 71.53274 * 14 12 3 17 17 C 1.52999 * 109.47058 * 191.53557 * 14 12 3 18 18 H 1.09001 * 109.87733 * 59.29858 * 17 14 12 19 19 C 1.54104 * 109.87559 * 180.30833 * 17 14 12 20 20 C 1.54813 * 104.18776 * 121.45301 * 19 17 14 21 21 C 1.54989 * 102.09523 * 20.87645 * 20 19 17 22 22 O 1.43746 * 109.87966 * 298.29057 * 17 14 12 23 23 H 1.09001 * 109.47024 * 306.11263 * 1 2 3 24 24 H 1.08997 * 109.47812 * 66.11257 * 1 2 3 25 25 H 1.09001 * 109.47038 * 186.11711 * 1 2 3 26 26 H 1.09001 * 109.46594 * 240.00666 * 2 1 3 27 27 H 1.08995 * 109.47354 * 120.00522 * 2 1 3 28 28 H 0.97009 * 120.00133 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46974 * 65.42811 * 16 14 12 30 30 H 1.09000 * 109.47403 * 185.43021 * 16 14 12 31 31 H 1.08998 * 109.46922 * 305.42931 * 16 14 12 32 32 H 1.09001 * 110.48533 * 240.12637 * 19 17 14 33 33 H 1.08995 * 110.49169 * 2.64311 * 19 17 14 34 34 H 1.09004 * 110.90921 * 139.07625 * 20 19 17 35 35 H 1.09000 * 110.90396 * 262.64034 * 20 19 17 36 36 H 1.09004 * 110.61685 * 81.47578 * 21 20 19 37 37 H 1.08993 * 110.62009 * 204.31625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1767 2.0523 1.1850 5 1 2.6466 3.0247 1.1964 6 6 1.7327 1.4813 2.3714 7 7 0.9042 0.4619 2.3403 8 14 2.3137 2.1629 4.0107 9 1 3.5544 1.4610 4.4270 10 1 2.5895 3.6157 3.8730 11 1 1.2593 1.9542 5.0354 12 6 2.3119 1.9923 -1.1648 13 8 2.0709 1.4394 -2.2173 14 6 2.9392 3.3625 -1.1598 15 1 2.3835 4.0141 -0.4855 16 6 4.3904 3.2572 -0.6866 17 6 2.9050 3.9442 -2.5745 18 1 1.8744 4.0105 -2.9231 19 6 3.5517 5.3430 -2.5816 20 6 4.7137 5.2186 -3.5969 21 6 4.2816 3.9895 -4.4363 22 8 3.6691 3.1124 -3.4637 23 1 -0.3633 0.6057 0.8302 24 1 -0.3634 0.4161 -0.9396 25 1 -0.3633 -1.0218 0.1095 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.5939 0.0635 3.1686 29 1 4.9686 2.6851 -1.4123 30 1 4.8147 4.2566 -0.5906 31 1 4.4217 2.7548 0.2802 32 1 2.8340 6.0933 -2.9132 33 1 3.9327 5.5922 -1.5913 34 1 4.7829 6.1103 -4.2201 35 1 5.6578 5.0291 -3.0862 36 1 3.5576 4.2799 -5.1976 37 1 5.1485 3.5135 -4.8944 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720608615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = -86.983001 kcal Electronic energy + Delta-G solvation = -18670.306077 eV Core-core repulsion = 15833.594291 eV Total energy + Delta-G solvation = -2836.711786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10182 -39.70142 -36.91004 -34.66764 -33.29799 -32.71611 -31.38517 -28.78702 -26.77069 -25.68218 -23.95945 -22.65922 -21.50753 -20.63732 -18.74710 -17.87702 -17.11162 -16.64627 -16.37378 -15.95189 -15.87071 -15.32740 -14.82600 -14.50584 -14.26580 -14.06908 -13.72825 -13.09896 -12.92314 -12.81650 -12.76324 -12.46491 -12.37269 -12.27133 -12.10807 -12.02118 -11.84781 -11.78820 -11.67626 -11.36538 -10.75361 -10.44158 -10.05713 -9.66564 -8.10791 -5.76651 1.46819 1.52550 1.62409 2.13427 2.34578 2.99003 3.19845 3.22501 3.72428 3.91977 4.08561 4.21087 4.25020 4.32561 4.51916 4.54264 4.62979 4.81688 4.87356 4.91015 4.94695 5.00263 5.00867 5.04320 5.13717 5.17153 5.24206 5.32493 5.40331 5.47995 5.57167 5.90439 5.95476 6.23910 6.59479 7.22358 7.72482 8.13817 8.80564 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.007934 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.392113 B = 3528.175784 C = 4223.355259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.143 3.857 3 N -0.459 5.459 4 C -0.344 4.344 5 H 0.116 0.884 6 C -0.014 4.014 7 N -0.887 5.887 8 Si 0.990 3.010 9 H -0.279 1.279 10 H -0.257 1.257 11 H -0.287 1.287 12 C 0.444 3.556 13 O -0.632 6.632 14 C -0.089 4.089 15 H 0.100 0.900 16 C -0.126 4.126 17 C 0.097 3.903 18 H 0.038 0.962 19 C -0.146 4.146 20 C -0.141 4.141 21 C 0.027 3.973 22 O -0.384 6.384 23 H 0.082 0.918 24 H 0.001 0.999 25 H 0.047 0.953 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.585 10.394 -3.685 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.019 3.981 3 N -0.178 5.178 4 C -0.471 4.471 5 H 0.134 0.866 6 C -0.214 4.214 7 N -0.527 5.527 8 Si 0.814 3.186 9 H -0.205 1.205 10 H -0.180 1.180 11 H -0.213 1.213 12 C 0.234 3.766 13 O -0.520 6.520 14 C -0.110 4.110 15 H 0.118 0.882 16 C -0.183 4.183 17 C 0.039 3.961 18 H 0.056 0.944 19 C -0.183 4.183 20 C -0.178 4.178 21 C -0.049 4.049 22 O -0.303 6.303 23 H 0.100 0.900 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.374 9.750 -4.014 12.321 hybrid contribution -0.324 -0.239 0.701 0.809 sum 6.049 9.512 -3.313 11.749 Atomic orbital electron populations 1.21936 0.96047 1.00751 0.98923 1.21083 0.95162 0.83579 0.98240 1.44111 1.56134 1.11769 1.05770 1.20156 1.39014 1.04275 0.83641 0.86614 1.26093 0.95308 0.97361 1.02668 1.70380 1.29229 1.25012 1.28091 0.84965 0.77479 0.79148 0.77006 1.20466 1.18042 1.21322 1.20835 0.83399 0.89439 0.82947 1.90515 1.60433 1.68727 1.32355 1.21264 0.98927 0.93807 0.97029 0.88182 1.21601 0.92916 1.02945 1.00862 1.22453 0.94500 0.90419 0.88757 0.94373 1.23056 0.98453 0.94782 1.02037 1.23082 0.98497 0.98754 0.97484 1.23818 0.97553 0.91306 0.92252 1.89147 1.66416 1.31805 1.42941 0.89984 0.97964 0.93405 0.96284 0.89977 0.92353 0.93705 0.89316 0.92401 0.89219 0.88825 0.87786 0.90067 0.92326 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 9.38 71.98 0.67 -5.31 16 2 C 0.14 7.59 5.38 86.38 0.47 8.06 16 3 N -0.46 -24.28 2.63 -635.53 -1.67 -25.95 16 4 C -0.34 -17.12 8.33 84.04 0.70 -16.42 16 5 H 0.12 5.26 5.32 -2.91 -0.02 5.25 16 6 C -0.01 -0.67 5.17 84.93 0.44 -0.23 16 7 N -0.89 -45.21 7.49 21.66 0.16 -45.05 16 8 Si 0.99 38.46 29.58 68.60 2.03 40.49 16 9 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 11 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 12 C 0.44 22.94 6.81 87.66 0.60 23.54 16 13 O -0.63 -36.98 14.78 15.43 0.23 -36.76 16 14 C -0.09 -3.56 1.66 -11.54 -0.02 -3.58 16 15 H 0.10 3.79 7.12 -2.39 -0.02 3.77 16 16 C -0.13 -4.38 8.41 71.98 0.61 -3.78 16 17 C 0.10 3.48 2.76 30.97 0.09 3.56 16 18 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 19 C -0.15 -3.46 6.19 31.59 0.20 -3.27 16 20 C -0.14 -2.84 7.16 31.89 0.23 -2.61 16 21 C 0.03 0.72 7.72 72.66 0.56 1.28 16 22 O -0.38 -15.14 9.17 -130.46 -1.20 -16.33 16 23 H 0.08 4.39 5.93 -2.39 -0.01 4.37 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.02 1.04 7.40 -2.39 -0.02 1.02 16 27 H 0.08 4.46 6.14 -2.39 -0.01 4.44 16 28 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 29 H 0.04 1.66 7.49 -2.38 -0.02 1.65 16 30 H 0.09 2.34 6.57 -2.39 -0.02 2.33 16 31 H 0.06 2.18 6.43 -2.39 -0.02 2.16 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 2.00 6.24 -2.39 -0.01 1.98 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.49 286.02 5.14 -60.35 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.05 Total: 22.00 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.53 Total: 1.26 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.51 Total: -71.00 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.97 Total: -53.09 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -65.49 5.14 -60.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720608615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.634 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds