Wall clock time and date at job start Mon Mar 30 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50701 * 109.47180 * 239.99722 * 2 1 3 5 5 O 1.21280 * 119.99781 * 239.99561 * 4 2 1 6 6 N 1.34771 * 119.99622 * 60.00237 * 4 2 1 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.52997 * 109.47127 * 119.99574 * 2 1 3 18 18 H 1.09007 * 110.33442 * 60.70391 * 17 2 1 19 19 C 1.54480 * 110.37566 * 298.45443 * 17 2 1 20 20 C 1.54506 * 104.06344 * 217.19058 * 19 17 2 21 21 C 1.54475 * 104.06445 * 359.97438 * 20 19 17 22 22 O 1.44426 * 110.37307 * 182.95042 * 17 2 1 23 23 H 1.08998 * 109.46505 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46884 * 299.99674 * 1 2 3 25 25 H 1.08996 * 109.47129 * 60.00751 * 1 2 3 26 26 H 0.96996 * 120.00772 * 359.97438 * 6 4 2 27 27 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 28 28 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 29 29 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 30 30 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 31 31 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 32 32 H 1.09006 * 110.50868 * 335.83327 * 19 17 2 33 33 H 1.08996 * 110.51284 * 98.40448 * 19 17 2 34 34 H 1.08998 * 110.51421 * 118.64598 * 20 19 17 35 35 H 1.09006 * 110.51139 * 241.35116 * 20 19 17 36 36 H 1.08998 * 110.37492 * 142.81237 * 21 20 19 37 37 H 1.09001 * 110.37507 * 265.03522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1957 -0.9404 -3.6506 8 6 1.6851 -0.2196 -4.8999 9 6 2.1884 -0.9293 -6.1303 10 1 2.8099 -1.8070 -6.0312 11 6 1.8546 -0.4589 -7.3826 12 7 1.0973 0.6096 -7.5033 13 14 2.4791 -1.3382 -8.9079 14 1 3.3057 -2.5037 -8.5036 15 1 1.3250 -1.8070 -9.7163 16 1 3.3024 -0.4033 -9.7160 17 6 2.0401 -0.7211 1.2493 18 1 1.6948 -1.7551 1.2573 19 6 1.5688 0.0130 2.5242 20 6 2.7651 -0.1130 3.4939 21 6 3.8173 -0.9090 2.6904 22 8 3.4824 -0.6725 1.3043 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.1489 0.5384 -2.5436 27 1 3.2857 -0.9399 -3.6505 28 1 1.8328 -1.9682 -3.6508 29 1 0.5951 -0.2204 -4.8999 30 1 2.0476 0.8083 -4.9000 31 1 0.8622 0.9404 -8.3844 32 1 1.3620 1.0610 2.3070 33 1 0.6852 -0.4715 2.9394 34 1 3.1497 0.8725 3.7562 35 1 2.4742 -0.6614 4.3899 36 1 4.8195 -0.5394 2.9072 37 1 3.7474 -1.9718 2.9222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720609010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:43 Heat of formation + Delta-G solvation = -107.422038 kcal Electronic energy + Delta-G solvation = -17337.726754 eV Core-core repulsion = 14500.128665 eV Total energy + Delta-G solvation = -2837.598089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04147 -38.56298 -34.76501 -34.01396 -32.72129 -31.97099 -29.57485 -27.93683 -25.25244 -24.17540 -22.39875 -21.12674 -20.68323 -19.57575 -17.13189 -16.41777 -16.19131 -15.76183 -15.61513 -14.77522 -14.56960 -14.41831 -13.81096 -13.49231 -13.18028 -12.93826 -12.36274 -12.28685 -12.00440 -11.77989 -11.64836 -11.21953 -11.15168 -11.12745 -11.00973 -10.74396 -10.59158 -10.27972 -9.72318 -9.68895 -9.36215 -9.04551 -8.48497 -8.27629 -6.07224 -4.09613 3.14591 3.30038 3.37410 3.42794 3.70536 3.85651 4.41107 4.43863 4.58558 4.76687 4.89452 4.97402 5.13197 5.18182 5.26531 5.29905 5.49645 5.54022 5.56113 5.62612 5.67157 5.77933 5.84689 5.98946 6.07444 6.41291 6.42153 6.80150 6.87499 7.02827 7.55888 7.65719 7.91788 8.12192 8.31925 8.79057 8.96957 9.55120 11.04473 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056060 B = 0.004022 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.346178 B = 6960.720254 C = 7283.476330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.101 0.899 4 C 0.510 3.490 5 O -0.538 6.538 6 N -0.725 5.725 7 C 0.122 3.878 8 C 0.012 3.988 9 C -0.520 4.520 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.097 3.903 18 H 0.074 0.926 19 C -0.151 4.151 20 C -0.155 4.155 21 C 0.042 3.958 22 O -0.354 6.354 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.395 0.605 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 1.352 20.705 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 H 0.119 0.881 4 C 0.295 3.705 5 O -0.415 6.415 6 N -0.375 5.375 7 C 0.000 4.000 8 C -0.025 4.025 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.038 3.962 18 H 0.092 0.908 19 C -0.189 4.189 20 C -0.193 4.193 21 C -0.036 4.036 22 O -0.272 6.272 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.229 0.771 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.048 0.773 20.446 20.487 hybrid contribution -0.108 0.021 -0.782 0.789 sum -1.156 0.795 19.664 19.714 Atomic orbital electron populations 1.21760 0.92144 1.03116 1.03051 1.21417 0.97371 1.01214 0.92979 0.88095 1.20338 0.80678 0.84948 0.84578 1.90687 1.37587 1.26440 1.86737 1.46316 1.53046 1.31916 1.06230 1.21683 0.98495 0.96174 0.83640 1.19324 0.96873 0.96057 0.90261 1.21110 1.31701 1.12565 0.90476 0.92213 1.25001 0.95041 0.95041 0.99262 1.69970 1.36779 1.23048 1.23588 0.86459 0.78664 0.79728 0.82744 1.19576 1.20956 1.20939 1.22714 0.81967 0.98684 0.92786 0.90849 1.23034 0.98516 1.01904 0.95408 1.22942 0.96091 1.01427 0.98861 1.23391 0.98943 0.99018 0.82210 1.89313 1.20267 1.92827 1.24809 0.91829 0.91418 0.91146 0.77107 0.92692 0.92738 0.95984 0.95976 0.92943 0.90437 0.90434 0.90767 0.90737 0.89358 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.88 37.16 0.33 -1.08 16 2 C -0.11 -1.39 2.40 -91.77 -0.22 -1.61 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.51 9.13 7.04 -10.99 -0.08 9.06 16 5 O -0.54 -11.85 15.44 -9.88 -0.15 -12.00 16 6 N -0.72 -13.19 5.45 -60.29 -0.33 -13.51 16 7 C 0.12 2.71 5.61 -4.04 -0.02 2.69 16 8 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 9 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 10 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.10 1.23 2.29 -25.96 -0.06 1.17 16 18 H 0.07 1.00 8.10 -51.92 -0.42 0.58 16 19 C -0.15 -1.33 5.57 -25.16 -0.14 -1.47 16 20 C -0.16 -1.28 7.09 -25.17 -0.18 -1.45 16 21 C 0.04 0.45 7.63 37.93 0.29 0.74 16 22 O -0.35 -5.40 10.51 -50.67 -0.53 -5.94 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.50 7.21 -51.93 -0.37 0.13 16 25 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 26 H 0.40 6.18 7.89 -40.82 -0.32 5.86 16 27 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 0.62 7.74 -51.93 -0.40 0.22 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -33.34 305.83 -7.42 -40.77 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.10 Total: 0.36 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.63 Total: -5.25 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.41 Total: -39.16 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.69 Total: -17.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.34 -7.42 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.655 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds