Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50701 * 109.47180 * 239.99722 * 2 1 3 5 5 O 1.21280 * 119.99781 * 239.99561 * 4 2 1 6 6 N 1.34771 * 119.99622 * 60.00237 * 4 2 1 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.52997 * 109.47127 * 119.99574 * 2 1 3 18 18 H 1.09007 * 110.33442 * 60.70391 * 17 2 1 19 19 C 1.54480 * 110.37566 * 298.45443 * 17 2 1 20 20 C 1.54506 * 104.06344 * 217.19058 * 19 17 2 21 21 C 1.54475 * 104.06445 * 359.97438 * 20 19 17 22 22 O 1.44426 * 110.37307 * 182.95042 * 17 2 1 23 23 H 1.08998 * 109.46505 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46884 * 299.99674 * 1 2 3 25 25 H 1.08996 * 109.47129 * 60.00751 * 1 2 3 26 26 H 0.96996 * 120.00772 * 359.97438 * 6 4 2 27 27 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 28 28 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 29 29 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 30 30 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 31 31 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 32 32 H 1.09006 * 110.50868 * 335.83327 * 19 17 2 33 33 H 1.08996 * 110.51284 * 98.40448 * 19 17 2 34 34 H 1.08998 * 110.51421 * 118.64598 * 20 19 17 35 35 H 1.09006 * 110.51139 * 241.35116 * 20 19 17 36 36 H 1.08998 * 110.37492 * 142.81237 * 21 20 19 37 37 H 1.09001 * 110.37507 * 265.03522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1957 -0.9404 -3.6506 8 6 1.6851 -0.2196 -4.8999 9 6 2.1884 -0.9293 -6.1303 10 1 2.8099 -1.8070 -6.0312 11 6 1.8546 -0.4589 -7.3826 12 7 1.0973 0.6096 -7.5033 13 14 2.4791 -1.3382 -8.9079 14 1 3.3057 -2.5037 -8.5036 15 1 1.3250 -1.8070 -9.7163 16 1 3.3024 -0.4033 -9.7160 17 6 2.0401 -0.7211 1.2493 18 1 1.6948 -1.7551 1.2573 19 6 1.5688 0.0130 2.5242 20 6 2.7651 -0.1130 3.4939 21 6 3.8173 -0.9090 2.6904 22 8 3.4824 -0.6725 1.3043 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.1489 0.5384 -2.5436 27 1 3.2857 -0.9399 -3.6505 28 1 1.8328 -1.9682 -3.6508 29 1 0.5951 -0.2204 -4.8999 30 1 2.0476 0.8083 -4.9000 31 1 0.8622 0.9404 -8.3844 32 1 1.3620 1.0610 2.3070 33 1 0.6852 -0.4715 2.9394 34 1 3.1497 0.8725 3.7562 35 1 2.4742 -0.6614 4.3899 36 1 4.8195 -0.5394 2.9072 37 1 3.7474 -1.9718 2.9222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720609010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -130.149757 kcal Electronic energy + Delta-G solvation = -17338.712302 eV Core-core repulsion = 14500.128665 eV Total energy + Delta-G solvation = -2838.583637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21754 -39.77823 -36.57532 -35.17375 -34.64621 -32.78660 -31.44457 -28.82691 -26.96408 -25.42535 -23.51443 -22.73320 -21.81961 -20.84266 -18.62515 -18.22651 -17.28351 -16.91555 -16.68693 -16.45690 -16.12026 -16.00919 -14.94574 -14.68679 -14.49275 -14.32143 -13.99425 -13.29422 -13.22703 -13.00113 -12.87427 -12.58380 -12.54396 -12.47226 -12.23958 -12.02183 -11.98955 -11.65586 -11.44256 -11.41941 -10.68200 -10.63228 -10.61570 -9.98710 -8.25259 -6.35751 1.40201 1.40998 1.54454 1.72245 2.26769 2.45602 2.96897 3.09227 3.61353 3.69236 3.92519 4.01625 4.14392 4.18496 4.38790 4.45977 4.47815 4.49051 4.62679 4.79816 4.83349 4.86676 4.87961 4.97929 5.02635 5.16704 5.24241 5.26084 5.31654 5.50353 5.56920 5.78010 6.00400 6.15697 6.66974 6.77258 7.33569 7.34429 8.86793 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056060 B = 0.004022 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.346178 B = 6960.720254 C = 7283.476330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.117 0.883 4 C 0.504 3.496 5 O -0.583 6.583 6 N -0.719 5.719 7 C 0.141 3.859 8 C 0.024 3.976 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.008 3.992 12 N -0.925 5.925 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.276 1.276 17 C 0.088 3.912 18 H 0.055 0.945 19 C -0.142 4.142 20 C -0.148 4.148 21 C 0.030 3.970 22 O -0.397 6.397 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.410 0.590 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.266 0.734 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 2.030 21.869 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.135 0.865 4 C 0.292 3.708 5 O -0.463 6.463 6 N -0.370 5.370 7 C 0.017 3.983 8 C -0.013 4.013 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.201 1.201 17 C 0.030 3.970 18 H 0.073 0.927 19 C -0.179 4.179 20 C -0.185 4.185 21 C -0.047 4.047 22 O -0.317 6.317 23 H 0.075 0.925 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.246 0.754 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.818 1.475 21.633 21.760 hybrid contribution 0.154 -0.201 -1.118 1.147 sum -1.664 1.274 20.515 20.622 Atomic orbital electron populations 1.21797 0.89497 1.03307 1.04991 1.21489 0.99362 1.01055 0.90077 0.86464 1.21351 0.79495 0.84411 0.85554 1.90661 1.39595 1.28673 1.87406 1.46158 1.53229 1.32200 1.05453 1.21176 0.97321 0.95564 0.84233 1.19124 0.95928 0.95269 0.91008 1.21495 1.32194 1.12958 0.92018 0.92583 1.25868 0.95044 0.95739 1.02451 1.70063 1.37530 1.24195 1.24703 0.85385 0.78334 0.78628 0.78634 1.19165 1.20010 1.20110 1.22853 0.81228 0.98373 0.94525 0.92720 1.23029 0.99336 1.02360 0.93203 1.22936 0.94841 1.01812 0.98941 1.23626 1.00441 0.99633 0.80961 1.89268 1.21856 1.93048 1.27520 0.92538 0.87937 0.90762 0.75431 0.94280 0.93842 0.97053 0.97357 0.92478 0.88942 0.88305 0.89662 0.88688 0.88631 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.88 71.98 0.64 -1.75 16 2 C -0.10 -2.40 2.40 -11.54 -0.03 -2.43 16 3 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.50 18.21 7.04 87.66 0.62 18.83 16 5 O -0.58 -26.56 15.44 11.73 0.18 -26.37 16 6 N -0.72 -26.39 5.45 -463.06 -2.52 -28.91 16 7 C 0.14 6.43 5.61 86.38 0.48 6.91 16 8 C 0.02 1.25 5.09 29.85 0.15 1.40 16 9 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 10 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 11 C 0.01 0.44 5.46 84.65 0.46 0.91 16 12 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 13 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 C 0.09 2.15 2.29 31.10 0.07 2.22 16 18 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 19 C -0.14 -2.04 5.57 31.61 0.18 -1.86 16 20 C -0.15 -2.01 7.09 31.61 0.22 -1.78 16 21 C 0.03 0.62 7.63 72.48 0.55 1.17 16 22 O -0.40 -12.13 10.51 -134.22 -1.41 -13.54 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.10 7.21 -2.39 -0.02 1.08 16 25 H 0.07 1.24 7.56 -2.39 -0.02 1.22 16 26 H 0.41 12.65 7.89 -92.71 -0.73 11.91 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.09 1.08 7.74 -2.38 -0.02 1.06 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.28 305.83 2.45 -70.83 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.31 Total: 13.68 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.58 Total: -7.60 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.24 Total: -83.31 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.23 Total: -39.92 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -73.28 2.45 -70.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720609010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.324 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds