Wall clock time and date at job start Mon Mar 30 2020 03:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47182 * 2 1 4 4 C 1.50701 * 109.46890 * 240.00485 * 2 1 3 5 5 H 1.08004 * 119.99886 * 245.62990 * 4 2 1 6 6 C 1.37874 * 120.00382 * 65.63071 * 4 2 1 7 7 N 1.31512 * 120.00320 * 197.51258 * 6 4 2 8 8 Si 1.86802 * 119.99927 * 17.50380 * 6 4 2 9 9 H 1.48501 * 109.47103 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47069 * 60.00621 * 8 6 4 11 11 H 1.48493 * 109.47248 * 300.00497 * 8 6 4 12 12 N 1.46496 * 109.46774 * 120.00431 * 2 1 3 13 13 C 1.34774 * 120.00264 * 274.99444 * 12 2 1 14 14 O 1.21283 * 119.99743 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00592 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.46638 * 300.00088 * 15 13 12 17 17 C 1.52998 * 109.47170 * 59.99706 * 15 13 12 18 18 C 1.52996 * 109.47261 * 180.02562 * 15 13 12 19 19 H 1.08994 * 110.28004 * 60.63281 * 18 15 13 20 20 C 1.54948 * 110.30845 * 182.83399 * 18 15 13 21 21 C 1.55305 * 100.94170 * 155.35636 * 20 18 15 22 22 C 1.54377 * 102.25347 * 325.86656 * 21 20 18 23 23 O 1.43232 * 107.59086 * 21.35666 * 22 21 20 24 24 H 1.08997 * 109.46997 * 186.33799 * 1 2 3 25 25 H 1.08999 * 109.46724 * 306.34397 * 1 2 3 26 26 H 1.09000 * 109.46730 * 66.34128 * 1 2 3 27 27 H 0.97001 * 119.99820 * 354.87798 * 7 6 4 28 28 H 0.97001 * 119.99995 * 95.00427 * 12 2 1 29 29 H 1.08994 * 109.47285 * 180.02562 * 17 15 13 30 30 H 1.08997 * 109.46955 * 300.00618 * 17 15 13 31 31 H 1.09002 * 109.46362 * 60.00281 * 17 15 13 32 32 H 1.09003 * 111.12140 * 273.27432 * 20 18 15 33 33 H 1.08996 * 111.12549 * 37.43533 * 20 18 15 34 34 H 1.08997 * 110.84509 * 207.66972 * 21 20 18 35 35 H 1.08999 * 110.84887 * 84.05776 * 21 20 18 36 36 H 1.09001 * 109.83019 * 261.84286 * 22 21 20 37 37 H 1.09000 * 109.83325 * 140.87238 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.5762 -1.6384 -1.1341 6 6 1.7977 -0.1754 -2.4794 7 7 1.9162 -0.9292 -3.5506 8 14 1.3111 1.6200 -2.6501 9 1 1.1169 1.9459 -4.0859 10 1 2.3839 2.4792 -2.0878 11 1 0.0453 1.8621 -1.9125 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8584 1.1582 2.4117 15 6 2.6499 -0.7288 3.5875 16 1 1.9776 -1.5510 3.8324 17 6 4.0525 -1.2789 3.3213 18 6 2.7007 0.2541 4.7588 19 1 1.7050 0.6456 4.9670 20 6 3.2826 -0.4383 6.0170 21 6 3.8354 0.7852 6.7977 22 6 4.3055 1.7154 5.6588 23 8 3.6084 1.3291 4.4687 24 1 -0.3633 -1.0214 0.1134 25 1 -0.3633 0.6090 0.8278 26 1 -0.3633 0.4124 -0.9413 27 1 2.2402 -1.8399 -3.4693 28 1 2.2490 -1.6319 1.1525 29 1 4.4160 -1.7930 4.2110 30 1 4.0158 -1.9792 2.4869 31 1 4.7248 -0.4566 3.0763 32 1 2.5012 -0.9452 6.5831 33 1 4.0829 -1.1286 5.7507 34 1 4.6728 0.4945 7.4319 35 1 3.0485 1.2583 7.3851 36 1 5.3797 1.6048 5.5106 37 1 4.0698 2.7506 5.9058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720611900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:41 Heat of formation + Delta-G solvation = -96.503629 kcal Electronic energy + Delta-G solvation = -18051.986048 eV Core-core repulsion = 15214.861416 eV Total energy + Delta-G solvation = -2837.124632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98172 -38.41982 -34.86526 -33.68041 -32.27538 -31.95834 -29.53177 -27.84299 -24.99820 -24.60314 -22.14612 -21.47238 -19.99381 -19.22477 -17.63053 -16.90170 -16.18568 -15.87427 -15.14768 -14.56075 -14.46337 -13.95286 -13.44398 -13.30947 -13.07296 -12.60755 -12.24469 -11.99467 -11.90965 -11.79656 -11.68591 -11.50497 -11.33401 -11.02626 -10.89693 -10.72495 -10.42310 -9.96406 -9.73805 -9.33102 -9.04990 -8.91076 -8.26508 -8.04031 -6.53447 -4.16194 3.39958 3.43646 3.49597 3.64645 3.85143 4.08346 4.37688 4.46504 4.69707 4.82563 5.04778 5.09152 5.20100 5.22057 5.28879 5.39679 5.55696 5.58529 5.69903 5.76816 5.88901 5.90672 5.98359 6.11791 6.37912 6.46165 6.62245 6.74946 7.04460 7.21295 7.37729 7.51955 7.74625 8.28390 8.60533 8.77818 9.13112 9.52515 10.87111 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042530 B = 0.005724 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.198863 B = 4890.346509 C = 5087.713071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.241 3.759 3 H 0.040 0.960 4 C -0.615 4.615 5 H 0.060 0.940 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.542 6.542 15 C -0.114 4.114 16 H 0.100 0.900 17 C -0.142 4.142 18 C 0.105 3.895 19 H 0.074 0.926 20 C -0.158 4.158 21 C -0.155 4.155 22 C 0.047 3.953 23 O -0.355 6.355 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.390 0.610 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -0.903 19.243 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.653 4.653 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.533 5.533 8 Si 0.870 3.130 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.420 6.420 15 C -0.135 4.135 16 H 0.118 0.882 17 C -0.199 4.199 18 C 0.047 3.953 19 H 0.091 0.909 20 C -0.196 4.196 21 C -0.192 4.192 22 C -0.030 4.030 23 O -0.274 6.274 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.459 1.191 17.923 18.130 hybrid contribution 0.592 -1.853 1.340 2.362 sum 3.051 -0.662 19.263 19.514 Atomic orbital electron populations 1.22491 0.99075 0.99945 1.00271 1.18961 0.90409 0.94215 0.82651 0.94243 1.22085 1.41564 1.10424 0.91201 0.92155 1.25677 0.94282 1.05078 0.91766 1.70885 1.41237 1.09819 1.31386 0.84076 0.77682 0.75185 0.76046 1.20969 1.20616 1.19780 1.46256 1.65582 1.13565 1.10001 1.20284 0.78422 0.87514 0.84635 1.90663 1.50527 1.15757 1.85046 1.21508 0.99348 0.98295 0.94381 0.88184 1.21768 0.95063 1.01420 1.01679 1.22653 0.94101 0.86535 0.92051 0.90852 1.23469 1.01567 0.98199 0.96342 1.23098 1.01473 0.96280 0.98380 1.23097 0.96719 0.98193 0.84994 1.88631 1.55905 1.52478 1.30360 0.93856 0.95262 0.92045 0.92204 0.77673 0.91967 0.91934 0.91319 0.90041 0.89655 0.90309 0.90716 0.91755 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.16 37.16 0.34 -3.40 16 2 C 0.24 6.04 2.14 -69.08 -0.15 5.89 16 3 H 0.04 1.09 6.23 -51.93 -0.32 0.76 16 4 C -0.61 -17.08 9.00 -34.44 -0.31 -17.39 16 5 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 6 C 0.04 1.10 5.29 -17.82 -0.09 1.00 16 7 N -0.90 -27.24 13.70 55.43 0.76 -26.48 16 8 Si 1.04 25.90 26.29 -169.99 -4.47 21.43 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.34 5.76 56.52 0.33 -6.02 16 12 N -0.71 -14.90 4.96 -54.93 -0.27 -15.17 16 13 C 0.51 10.21 6.99 -10.99 -0.08 10.13 16 14 O -0.54 -13.08 15.05 -11.24 -0.17 -13.25 16 15 C -0.11 -1.65 2.70 -91.77 -0.25 -1.89 16 16 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.14 -1.83 8.63 37.16 0.32 -1.51 16 18 C 0.10 1.46 2.69 -25.70 -0.07 1.39 16 19 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 20 C -0.16 -1.52 6.45 -24.48 -0.16 -1.68 16 21 C -0.15 -1.38 7.02 -24.79 -0.17 -1.55 16 22 C 0.05 0.55 7.79 37.88 0.30 0.85 16 23 O -0.35 -5.82 9.41 -52.03 -0.49 -6.31 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.47 4.88 -51.93 -0.25 1.22 16 27 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 28 H 0.39 7.31 7.94 -40.82 -0.32 6.99 16 29 H 0.06 0.62 6.05 -51.93 -0.31 0.31 16 30 H 0.06 0.79 7.56 -51.93 -0.39 0.40 16 31 H 0.07 1.02 7.69 -51.93 -0.40 0.63 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.76 5.75 -51.93 -0.30 0.46 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -33.28 293.30 -6.30 -39.57 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.76 Total: 3.95 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.32 Total: -8.16 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.49 Total: -41.65 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.66 Total: -19.57 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -4.47 Total: 21.43 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.28 -6.30 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720611900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.929 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds