Wall clock time and date at job start Mon Mar 30 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47421 * 2 1 4 4 C 1.50699 * 109.46879 * 239.99952 * 2 1 3 5 5 H 1.07999 * 120.00258 * 275.00336 * 4 2 1 6 6 C 1.37879 * 119.99979 * 95.00694 * 4 2 1 7 7 N 1.31518 * 119.99891 * 184.91600 * 6 4 2 8 8 Si 1.86795 * 119.99926 * 4.91274 * 6 4 2 9 9 H 1.48500 * 109.47064 * 84.83844 * 8 6 4 10 10 H 1.48497 * 109.46930 * 204.83448 * 8 6 4 11 11 H 1.48505 * 109.47237 * 324.83517 * 8 6 4 12 12 N 1.46504 * 109.47411 * 120.00269 * 2 1 3 13 13 C 1.34776 * 119.99868 * 274.99955 * 12 2 1 14 14 O 1.21282 * 120.00109 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00153 * 180.27208 * 13 12 2 16 16 H 1.08999 * 109.46703 * 299.72785 * 15 13 12 17 17 C 1.53003 * 109.46951 * 59.72219 * 15 13 12 18 18 C 1.52995 * 109.47154 * 179.72312 * 15 13 12 19 19 H 1.08996 * 109.82219 * 300.56645 * 18 15 13 20 20 C 1.54381 * 109.83093 * 179.58848 * 18 15 13 21 21 C 1.55303 * 102.25336 * 219.13116 * 20 18 15 22 22 C 1.54949 * 100.94268 * 34.13271 * 21 20 18 23 23 O 1.43236 * 109.83031 * 61.45643 * 18 15 13 24 24 H 1.08992 * 109.47214 * 175.03577 * 1 2 3 25 25 H 1.09003 * 109.46714 * 295.03911 * 1 2 3 26 26 H 1.09001 * 109.46714 * 55.03167 * 1 2 3 27 27 H 0.97000 * 120.00012 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00045 * 94.99296 * 12 2 1 29 29 H 1.08999 * 109.46910 * 60.00166 * 17 15 13 30 30 H 1.09001 * 109.46857 * 180.02562 * 17 15 13 31 31 H 1.09001 * 109.46912 * 300.00390 * 17 15 13 32 32 H 1.09006 * 110.84510 * 337.31587 * 20 18 15 33 33 H 1.08998 * 110.85115 * 100.93482 * 20 18 15 34 34 H 1.08996 * 111.12686 * 276.21087 * 21 20 18 35 35 H 1.09001 * 111.16214 * 152.06348 * 21 20 18 36 36 H 1.08998 * 110.30745 * 204.63902 * 22 21 20 37 37 H 1.08997 * 110.31162 * 82.47502 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1060 2.3990 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6554 -0.7272 3.5861 16 1 1.9841 -1.5491 3.8350 17 6 4.0568 -1.2778 3.3143 18 6 2.7122 0.2572 4.7558 19 1 3.3744 1.0870 4.5088 20 6 3.2222 -0.4632 6.0224 21 6 2.3365 0.1601 7.1354 22 6 1.0072 0.3738 6.3684 23 8 1.3980 0.7519 5.0389 24 1 -0.3633 -1.0237 -0.0889 25 1 -0.3633 0.4350 0.9311 26 1 -0.3633 0.5890 -0.8422 27 1 2.9363 -0.1049 -4.2556 28 1 2.2490 -1.6318 1.1526 29 1 4.7280 -0.4559 3.0653 30 1 4.4242 -1.7909 4.2030 31 1 4.0163 -1.9791 2.4808 32 1 3.0558 -1.5381 5.9508 33 1 4.2756 -0.2434 6.1962 34 1 2.7482 1.1088 7.4799 35 1 2.2035 -0.5325 7.9665 36 1 0.4262 1.1705 6.8330 37 1 0.4311 -0.5512 6.3448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720611902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:47 Heat of formation + Delta-G solvation = -100.596016 kcal Electronic energy + Delta-G solvation = -18032.349306 eV Core-core repulsion = 15195.047215 eV Total energy + Delta-G solvation = -2837.302091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.94675 -38.38387 -34.78608 -33.78714 -32.22624 -31.90216 -29.60413 -27.81971 -25.26839 -24.51518 -22.23864 -21.44994 -20.09047 -19.28921 -17.41711 -16.69335 -16.12394 -15.86815 -15.18494 -14.77774 -14.27876 -13.78309 -13.39002 -13.28057 -12.96070 -12.48875 -12.34259 -12.27287 -12.09458 -11.67413 -11.55158 -11.24114 -11.16500 -11.03426 -10.97861 -10.84611 -10.73500 -10.48435 -9.83080 -9.35534 -9.13531 -8.87157 -8.64257 -7.94077 -6.19520 -4.22423 3.29830 3.37392 3.46433 3.46800 3.84365 4.15364 4.37014 4.40522 4.66971 4.80841 5.06205 5.13102 5.18105 5.28904 5.32730 5.43431 5.56167 5.61614 5.64189 5.76620 5.86246 5.86888 5.99764 6.15947 6.31963 6.42865 6.62599 6.76835 7.03465 7.21922 7.27862 7.46967 7.67129 8.21897 8.68616 8.82088 9.16005 9.43863 10.92349 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040632 B = 0.005885 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.944321 B = 4756.558867 C = 4947.552844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.708 5.708 13 C 0.507 3.493 14 O -0.545 6.545 15 C -0.125 4.125 16 H 0.093 0.907 17 C -0.143 4.143 18 C 0.103 3.897 19 H 0.084 0.916 20 C -0.151 4.151 21 C -0.157 4.157 22 C 0.044 3.956 23 O -0.355 6.355 24 H 0.045 0.955 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.267 0.733 28 H 0.390 0.610 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -1.982 18.854 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.066 0.934 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.357 5.357 13 C 0.291 3.709 14 O -0.423 6.423 15 C -0.147 4.147 16 H 0.111 0.889 17 C -0.201 4.201 18 C 0.045 3.955 19 H 0.102 0.898 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.033 4.033 23 O -0.274 6.274 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.224 0.776 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.974 -0.987 18.505 18.557 hybrid contribution 0.225 0.250 -0.034 0.338 sum 1.199 -0.737 18.471 18.524 Atomic orbital electron populations 1.22209 0.98775 1.00394 0.99222 1.19080 0.90831 0.94287 0.82915 0.93376 1.21029 1.44983 0.95570 0.95019 0.90432 1.24935 0.93669 0.98593 0.95154 1.69889 1.45086 1.36135 1.01680 0.86891 0.79826 0.85927 0.77245 1.19914 1.21253 1.18456 1.46597 1.65482 1.13725 1.09867 1.20315 0.78505 0.87584 0.84479 1.90660 1.50733 1.16035 1.84861 1.21779 0.98956 0.99093 0.94860 0.88915 1.21749 0.94516 1.01529 1.02257 1.22491 0.85191 0.95304 0.92525 0.89793 1.23227 1.00644 1.00808 0.94147 1.23268 0.96121 1.01686 0.98352 1.23388 0.96166 1.00060 0.83694 1.88681 1.32071 1.76385 1.30262 0.93571 0.95138 0.93094 0.92319 0.77642 0.91900 0.91856 0.91236 0.90299 0.89977 0.90484 0.90214 0.90087 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.47 37.16 0.35 -3.05 16 2 C 0.23 5.73 2.22 -69.08 -0.15 5.57 16 3 H 0.05 1.30 4.73 -51.93 -0.25 1.06 16 4 C -0.53 -14.48 9.05 -34.44 -0.31 -14.79 16 5 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 8 Si 0.87 22.13 26.99 -169.99 -4.59 17.55 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.56 6.82 56.52 0.39 -6.18 16 12 N -0.71 -14.83 4.96 -54.93 -0.27 -15.10 16 13 C 0.51 10.25 6.99 -10.98 -0.08 10.17 16 14 O -0.54 -13.28 15.02 -11.55 -0.17 -13.45 16 15 C -0.13 -1.83 2.37 -91.77 -0.22 -2.05 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.14 -1.72 8.85 37.16 0.33 -1.39 16 18 C 0.10 1.45 2.61 -26.01 -0.07 1.39 16 19 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 20 C -0.15 -1.45 5.46 -24.79 -0.14 -1.58 16 21 C -0.16 -1.39 7.16 -24.48 -0.18 -1.56 16 22 C 0.04 0.50 7.78 38.19 0.30 0.80 16 23 O -0.36 -5.84 10.03 -52.34 -0.53 -6.37 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 7.19 8.00 -40.82 -0.33 6.86 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.58 7.06 -51.93 -0.37 0.21 16 31 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 32 H 0.08 0.67 7.57 -51.93 -0.39 0.28 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -33.22 300.20 -6.46 -39.69 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.95 Total: 3.25 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.26 Total: -4.29 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.50 Total: -40.89 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.70 Total: -19.82 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.59 Total: 17.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.22 -6.46 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720611902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.908 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds