Wall clock time and date at job start Mon Mar 30 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47113 * 2 1 4 4 C 1.36940 * 119.99546 * 84.70931 * 3 2 1 5 5 H 1.08000 * 120.00610 * 321.47129 * 4 3 2 6 6 C 1.38813 * 119.99557 * 141.47075 * 4 3 2 7 7 N 1.31618 * 120.00355 * 338.81240 * 6 4 3 8 8 Si 1.86803 * 119.99988 * 158.81434 * 6 4 3 9 9 H 1.48502 * 109.47033 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47506 * 119.99780 * 8 6 4 11 11 H 1.48504 * 109.47002 * 240.00088 * 8 6 4 12 12 C 1.46496 * 120.00325 * 264.71228 * 3 2 1 13 13 C 1.52992 * 109.47590 * 89.99787 * 12 3 2 14 14 H 1.09005 * 110.33266 * 307.25642 * 13 12 3 15 15 C 1.54422 * 110.37593 * 185.00259 * 13 12 3 16 16 C 1.54427 * 104.24197 * 216.91072 * 15 13 12 17 17 H 1.09005 * 113.19922 * 236.90174 * 16 15 13 18 18 C 1.54053 * 108.73418 * 109.28038 * 16 15 13 19 19 O 1.42919 * 107.12058 * 223.56250 * 18 16 15 20 20 C 1.42826 * 110.65772 * 18.29367 * 19 18 16 21 21 C 1.53645 * 108.35419 * 358.41386 * 20 19 18 22 22 H 1.09003 * 113.14041 * 222.15529 * 21 20 19 23 23 O 1.44199 * 109.26879 * 95.84914 * 21 20 19 24 24 H 1.09010 * 109.47053 * 299.99625 * 1 2 3 25 25 H 1.09001 * 109.47353 * 59.99575 * 1 2 3 26 26 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47353 * 120.00425 * 2 1 3 28 28 H 1.08998 * 109.46624 * 240.00503 * 2 1 3 29 29 H 0.96998 * 120.00565 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47093 * 210.00313 * 12 3 2 31 31 H 1.09007 * 109.46843 * 329.99552 * 12 3 2 32 32 H 1.08999 * 110.47357 * 335.60155 * 15 13 12 33 33 H 1.08995 * 110.47594 * 98.08732 * 15 13 12 34 34 H 1.09001 * 109.90808 * 342.92886 * 18 16 15 35 35 H 1.09001 * 109.90909 * 104.18667 * 18 16 15 36 36 H 1.08999 * 109.70892 * 238.66379 * 20 19 18 37 37 H 1.09002 * 109.65238 * 118.12780 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1434 2.0631 1.1809 5 1 1.4028 1.9393 1.9572 6 6 3.2223 2.9136 1.3803 7 7 4.3157 2.7691 0.6621 8 14 3.1221 4.2633 2.6679 9 1 1.7956 4.2148 3.3337 10 1 4.1914 4.0634 3.6788 11 1 3.2994 5.5850 2.0144 12 6 2.3728 2.0329 -1.2633 13 6 1.1420 2.7385 -1.8361 14 1 0.3031 2.0454 -1.8989 15 6 1.4589 3.3267 -3.2283 16 6 0.6806 4.6601 -3.2635 17 1 -0.0166 4.7284 -4.0986 18 6 1.6884 5.8232 -3.1956 19 8 1.1625 6.7825 -2.2760 20 6 0.1648 6.1888 -1.4441 21 6 -0.0121 4.7236 -1.8714 22 1 -1.0555 4.4099 -1.9041 23 8 0.7938 3.8801 -1.0237 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 5.0697 3.3632 0.8017 30 1 3.1613 2.7643 -1.0861 31 1 2.7249 1.2836 -1.9723 32 1 2.5289 3.5069 -3.3315 33 1 1.1083 2.6574 -4.0138 34 1 2.6525 5.4588 -2.8407 35 1 1.7998 6.2758 -4.1809 36 1 -0.7780 6.7226 -1.5627 37 1 0.4830 6.2320 -0.4024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724639564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:03 Heat of formation + Delta-G solvation = -67.359541 kcal Electronic energy + Delta-G solvation = -18884.006549 eV Core-core repulsion = 16048.145700 eV Total energy + Delta-G solvation = -2835.860849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21160 -37.02179 -35.43906 -32.14996 -31.73987 -30.48299 -28.76078 -27.83125 -25.24487 -23.55380 -21.98572 -20.91015 -20.31976 -19.96481 -17.03898 -16.57172 -15.61560 -15.47035 -14.73223 -14.60302 -14.30842 -13.81312 -13.56843 -13.14338 -12.70409 -12.39883 -12.29407 -12.16812 -11.54626 -11.12682 -11.09678 -10.97954 -10.85564 -10.65186 -10.57670 -10.47096 -10.33177 -9.89665 -9.80483 -9.57038 -9.27244 -8.94640 -8.33598 -6.45750 -5.67006 -3.24625 3.47143 3.55988 3.58442 4.08646 4.18119 4.61460 4.75111 4.99474 5.06887 5.26363 5.34616 5.48366 5.54583 5.56214 5.73241 5.86318 5.91080 5.99709 6.03096 6.06275 6.12108 6.22486 6.35714 6.37382 6.50685 6.65057 6.67577 6.72981 6.94552 7.17962 7.25356 7.56942 7.76531 7.95380 8.65049 9.30216 9.93519 10.50221 11.34278 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.011355 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.902185 B = 2465.179406 C = 3291.808697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.580 5.580 4 C -0.243 4.243 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.287 1.287 12 C 0.152 3.848 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.145 4.145 16 C -0.155 4.155 17 H 0.096 0.904 18 C 0.065 3.935 19 O -0.384 6.384 20 C 0.059 3.941 21 C 0.036 3.964 22 H 0.084 0.916 23 O -0.325 6.325 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 1.697 -8.828 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.300 5.300 4 C -0.373 4.373 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.213 1.213 12 C 0.024 3.976 13 C 0.000 4.000 14 H 0.070 0.930 15 C -0.183 4.183 16 C -0.173 4.173 17 H 0.115 0.885 18 C -0.012 4.012 19 O -0.303 6.303 20 C -0.017 4.017 21 C -0.023 4.023 22 H 0.102 0.898 23 O -0.243 6.243 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.085 2.001 -8.546 11.280 hybrid contribution -0.329 0.515 0.295 0.679 sum -7.413 2.516 -8.251 11.374 Atomic orbital electron populations 1.22381 1.00241 0.98720 1.01141 1.20864 0.91651 0.87455 0.98693 1.43678 1.75807 1.07971 1.02506 1.18854 1.03352 1.21286 0.93813 0.92715 1.25060 0.94191 1.00778 0.97908 1.69983 1.02847 1.37807 1.42937 0.86375 0.77330 0.82846 0.81048 1.20203 1.22101 1.21326 1.21031 0.93948 0.96287 0.86303 1.24103 1.00240 0.88325 0.87374 0.92993 1.23084 1.01059 0.94954 0.99204 1.23883 0.97902 0.96912 0.98649 0.88532 1.23200 0.96782 0.88324 0.92860 1.88104 1.56253 1.35904 1.50040 1.22930 0.91600 0.91054 0.96144 1.24184 0.96199 0.92386 0.89511 0.89799 1.89444 1.68330 1.32469 1.34055 0.93152 0.94053 0.94684 0.93747 0.94977 0.93833 0.88126 0.94434 0.90202 0.91325 0.91352 0.90733 0.91042 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.21 37.16 0.38 -2.68 16 2 C 0.14 2.98 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.48 2.43 -173.24 -0.42 -14.90 16 4 C -0.24 -6.79 9.19 -15.06 -0.14 -6.93 16 5 H 0.06 1.56 7.91 -52.49 -0.42 1.15 16 6 C 0.02 0.58 4.95 -17.43 -0.09 0.49 16 7 N -0.89 -26.16 11.53 55.49 0.64 -25.52 16 8 Si 0.89 22.77 29.60 -169.99 -5.03 17.74 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 C 0.15 3.50 4.95 -4.05 -0.02 3.48 16 13 C 0.06 1.17 3.52 -25.99 -0.09 1.08 16 14 H 0.05 1.00 6.45 -51.93 -0.33 0.67 16 15 C -0.14 -2.26 6.14 -25.24 -0.16 -2.41 16 16 C -0.15 -2.25 4.29 -87.93 -0.38 -2.63 16 17 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 18 C 0.06 1.01 7.28 37.71 0.27 1.28 16 19 O -0.38 -6.81 11.28 -35.23 -0.40 -7.21 16 20 C 0.06 0.98 7.52 37.49 0.28 1.26 16 21 C 0.04 0.60 4.34 -25.00 -0.11 0.50 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 O -0.32 -7.05 10.63 -35.23 -0.37 -7.42 16 24 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.04 0.74 6.45 -51.93 -0.33 0.41 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 2.69 5.58 -51.93 -0.29 2.41 16 31 H 0.04 0.80 7.86 -51.92 -0.41 0.40 16 32 H 0.08 1.28 6.94 -51.93 -0.36 0.92 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.18 7.23 -51.93 -0.38 0.81 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -30.85 293.28 -7.09 -37.93 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.86 Total: -1.43 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.07 Total: -3.61 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.22 Total: -40.43 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.77 Total: -14.63 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.85 -7.09 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724639564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.425 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds