Wall clock time and date at job start Mon Mar 30 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47113 * 2 1 4 4 C 1.36940 * 119.99546 * 84.70931 * 3 2 1 5 5 H 1.08000 * 120.00610 * 321.47129 * 4 3 2 6 6 C 1.38813 * 119.99557 * 141.47075 * 4 3 2 7 7 N 1.31618 * 120.00355 * 338.81240 * 6 4 3 8 8 Si 1.86803 * 119.99988 * 158.81434 * 6 4 3 9 9 H 1.48502 * 109.47033 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47506 * 119.99780 * 8 6 4 11 11 H 1.48504 * 109.47002 * 240.00088 * 8 6 4 12 12 C 1.46496 * 120.00325 * 264.71228 * 3 2 1 13 13 C 1.52992 * 109.47590 * 89.99787 * 12 3 2 14 14 H 1.09005 * 110.33266 * 307.25642 * 13 12 3 15 15 C 1.54422 * 110.37593 * 185.00259 * 13 12 3 16 16 C 1.54427 * 104.24197 * 216.91072 * 15 13 12 17 17 H 1.09005 * 113.19922 * 236.90174 * 16 15 13 18 18 C 1.54053 * 108.73418 * 109.28038 * 16 15 13 19 19 O 1.42919 * 107.12058 * 223.56250 * 18 16 15 20 20 C 1.42826 * 110.65772 * 18.29367 * 19 18 16 21 21 C 1.53645 * 108.35419 * 358.41386 * 20 19 18 22 22 H 1.09003 * 113.14041 * 222.15529 * 21 20 19 23 23 O 1.44199 * 109.26879 * 95.84914 * 21 20 19 24 24 H 1.09010 * 109.47053 * 299.99625 * 1 2 3 25 25 H 1.09001 * 109.47353 * 59.99575 * 1 2 3 26 26 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47353 * 120.00425 * 2 1 3 28 28 H 1.08998 * 109.46624 * 240.00503 * 2 1 3 29 29 H 0.96998 * 120.00565 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47093 * 210.00313 * 12 3 2 31 31 H 1.09007 * 109.46843 * 329.99552 * 12 3 2 32 32 H 1.08999 * 110.47357 * 335.60155 * 15 13 12 33 33 H 1.08995 * 110.47594 * 98.08732 * 15 13 12 34 34 H 1.09001 * 109.90808 * 342.92886 * 18 16 15 35 35 H 1.09001 * 109.90909 * 104.18667 * 18 16 15 36 36 H 1.08999 * 109.70892 * 238.66379 * 20 19 18 37 37 H 1.09002 * 109.65238 * 118.12780 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1434 2.0631 1.1809 5 1 1.4028 1.9393 1.9572 6 6 3.2223 2.9136 1.3803 7 7 4.3157 2.7691 0.6621 8 14 3.1221 4.2633 2.6679 9 1 1.7956 4.2148 3.3337 10 1 4.1914 4.0634 3.6788 11 1 3.2994 5.5850 2.0144 12 6 2.3728 2.0329 -1.2633 13 6 1.1420 2.7385 -1.8361 14 1 0.3031 2.0454 -1.8989 15 6 1.4589 3.3267 -3.2283 16 6 0.6806 4.6601 -3.2635 17 1 -0.0166 4.7284 -4.0986 18 6 1.6884 5.8232 -3.1956 19 8 1.1625 6.7825 -2.2760 20 6 0.1648 6.1888 -1.4441 21 6 -0.0121 4.7236 -1.8714 22 1 -1.0555 4.4099 -1.9041 23 8 0.7938 3.8801 -1.0237 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 5.0697 3.3632 0.8017 30 1 3.1613 2.7643 -1.0861 31 1 2.7249 1.2836 -1.9723 32 1 2.5289 3.5069 -3.3315 33 1 1.1083 2.6574 -4.0138 34 1 2.6525 5.4588 -2.8407 35 1 1.7998 6.2758 -4.1809 36 1 -0.7780 6.7226 -1.5627 37 1 0.4830 6.2320 -0.4024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724639564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:03 Heat of formation + Delta-G solvation = -87.885226 kcal Electronic energy + Delta-G solvation = -18884.896610 eV Core-core repulsion = 16048.145700 eV Total energy + Delta-G solvation = -2836.750910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53719 -38.54029 -37.18506 -33.77960 -33.48070 -31.98467 -30.34204 -29.34579 -26.98522 -25.29337 -23.27313 -22.46708 -21.75395 -21.60371 -18.73356 -18.07661 -17.18439 -16.97877 -16.44541 -16.03343 -15.75193 -15.50691 -15.44183 -14.72422 -14.16109 -13.96201 -13.76491 -13.59360 -13.17498 -13.01011 -12.69023 -12.65110 -12.35389 -12.29190 -12.22093 -12.00806 -11.81783 -11.76666 -11.47379 -11.30888 -10.59477 -10.48798 -10.38158 -8.50009 -7.78137 -5.39773 1.39068 1.45162 1.52086 2.51784 2.83023 2.90795 3.28950 3.51785 3.67331 3.79045 3.90448 4.07434 4.21768 4.31019 4.39026 4.45521 4.47414 4.70684 4.72513 4.74307 4.78758 4.85399 4.87238 4.93767 5.04536 5.07018 5.10385 5.23540 5.32127 5.59051 5.70133 5.79977 5.99223 6.25498 6.54042 7.23610 7.92977 8.42927 9.17040 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.011355 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.902185 B = 2465.179406 C = 3291.808697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.240 4.240 5 H 0.042 0.958 6 C -0.025 4.025 7 N -0.919 5.919 8 Si 0.942 3.058 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.297 1.297 12 C 0.151 3.849 13 C 0.064 3.936 14 H 0.061 0.939 15 C -0.138 4.138 16 C -0.138 4.138 17 H 0.140 0.860 18 C 0.058 3.942 19 O -0.404 6.404 20 C 0.056 3.944 21 C 0.028 3.972 22 H 0.111 0.889 23 O -0.372 6.372 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.247 0.753 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 1.473 -10.697 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.371 4.371 5 H 0.060 0.940 6 C -0.221 4.221 7 N -0.564 5.564 8 Si 0.772 3.228 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.225 1.225 12 C 0.025 3.975 13 C 0.004 3.996 14 H 0.079 0.921 15 C -0.176 4.176 16 C -0.156 4.156 17 H 0.157 0.843 18 C -0.018 4.018 19 O -0.324 6.324 20 C -0.021 4.021 21 C -0.030 4.030 22 H 0.129 0.871 23 O -0.292 6.292 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.124 1.762 -10.421 13.962 hybrid contribution 0.286 0.542 0.871 1.065 sum -8.837 2.303 -9.550 13.214 Atomic orbital electron populations 1.22176 0.97640 1.00675 1.00425 1.21013 0.93566 0.85624 0.98924 1.43913 1.76233 1.09454 1.02267 1.18916 1.02375 1.21227 0.94544 0.93994 1.25569 0.94230 1.02565 0.99780 1.70084 1.03272 1.38520 1.44483 0.85611 0.77440 0.80362 0.79432 1.19652 1.21647 1.22463 1.20941 0.94719 0.95837 0.86027 1.23874 0.98508 0.88208 0.88975 0.92127 1.23027 1.00810 0.96143 0.97608 1.23928 0.97641 0.95338 0.98711 0.84257 1.23342 0.95789 0.88954 0.93705 1.88082 1.56831 1.36843 1.50613 1.23041 0.92685 0.91934 0.94400 1.24499 0.97081 0.91406 0.90030 0.87098 1.89395 1.69645 1.33681 1.36453 0.95161 0.93384 0.91337 0.95186 0.93068 0.94348 0.92189 0.93303 0.91399 0.87813 0.94403 0.87389 0.87374 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 10.21 71.98 0.73 -4.49 16 2 C 0.13 5.58 6.44 86.38 0.56 6.14 16 3 N -0.60 -30.02 2.43 -702.01 -1.70 -31.72 16 4 C -0.24 -13.65 9.19 84.03 0.77 -12.88 16 5 H 0.04 2.46 7.91 -2.91 -0.02 2.43 16 6 C -0.02 -1.43 4.95 84.86 0.42 -1.01 16 7 N -0.92 -55.61 11.53 21.65 0.25 -55.36 16 8 Si 0.94 48.19 29.60 68.60 2.03 50.22 16 9 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 10 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 11 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 12 C 0.15 7.02 4.95 86.38 0.43 7.44 16 13 C 0.06 2.42 3.52 31.07 0.11 2.53 16 14 H 0.06 2.18 6.45 -2.38 -0.02 2.17 16 15 C -0.14 -3.94 6.14 31.56 0.19 -3.74 16 16 C -0.14 -3.53 4.29 -9.05 -0.04 -3.57 16 17 H 0.14 2.47 8.14 -2.38 -0.02 2.45 16 18 C 0.06 1.70 7.28 72.34 0.53 2.23 16 19 O -0.40 -13.91 11.28 -148.98 -1.68 -15.59 16 20 C 0.06 1.77 7.52 72.20 0.54 2.32 16 21 C 0.03 0.87 4.34 31.71 0.14 1.01 16 22 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 23 O -0.37 -16.06 10.63 -148.98 -1.58 -17.64 16 24 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.05 1.60 6.45 -2.39 -0.02 1.58 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 28 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 3.33 5.58 -2.39 -0.01 3.31 16 31 H 0.05 2.08 7.86 -2.38 -0.02 2.06 16 32 H 0.07 2.11 6.94 -2.39 -0.02 2.10 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.32 7.23 -2.39 -0.02 1.31 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 Total: -1.00 -68.97 293.28 2.73 -66.24 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.04 Total: 7.87 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.38 Total: -4.02 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -1.45 Total: -87.08 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -3.26 Total: -33.23 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -68.97 2.73 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724639564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.644 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds