Wall clock time and date at job start Mon Mar 30 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46843 * 111.00119 * 2 1 4 4 C 1.53037 * 109.52513 * 185.84356 * 3 2 1 5 5 C 1.53128 * 109.30957 * 300.84046 * 4 3 2 6 6 C 1.53122 * 109.15436 * 57.59402 * 5 4 3 7 7 C 1.46843 * 111.00194 * 124.21315 * 2 1 3 8 8 H 1.09005 * 109.46028 * 294.17175 * 7 2 1 9 9 C 1.53001 * 109.45479 * 54.14663 * 7 2 1 10 10 C 1.52996 * 109.47285 * 185.31326 * 9 7 2 11 11 C 1.50699 * 109.47424 * 174.89744 * 10 9 7 12 12 O 1.21210 * 119.99566 * 359.97438 * 11 10 9 13 13 O 1.34312 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.34923 * 116.99665 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00042 * 359.97438 * 14 13 11 16 16 C 1.38754 * 119.99733 * 180.02562 * 14 13 11 17 17 N 1.31439 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99650 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47248 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46950 * 120.00297 * 18 16 14 21 21 H 1.48501 * 109.46957 * 239.99508 * 18 16 14 22 22 H 1.09007 * 109.46475 * 289.18441 * 1 2 3 23 23 H 1.09005 * 109.46991 * 49.17803 * 1 2 3 24 24 H 1.08995 * 109.47407 * 169.18006 * 1 2 3 25 25 H 1.09004 * 109.46667 * 305.85926 * 3 2 1 26 26 H 1.08998 * 109.46298 * 65.82603 * 3 2 1 27 27 H 1.08995 * 109.50615 * 60.75751 * 4 3 2 28 28 H 1.09004 * 109.50374 * 180.84204 * 4 3 2 29 29 H 1.09002 * 109.48859 * 297.71301 * 5 4 3 30 30 H 1.08989 * 109.55712 * 177.51945 * 5 4 3 31 31 H 1.09007 * 109.49955 * 182.44924 * 6 5 4 32 32 H 1.08992 * 109.50311 * 62.36674 * 6 5 4 33 33 H 1.08998 * 109.47032 * 305.31292 * 9 7 2 34 34 H 1.08994 * 109.46784 * 65.31160 * 9 7 2 35 35 H 1.08997 * 109.46968 * 294.89838 * 10 9 7 36 36 H 1.08998 * 109.47054 * 54.89394 * 10 9 7 37 37 H 0.97001 * 120.00346 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1197 0.5366 1.0137 6 6 3.5182 -0.8715 1.0207 7 6 1.9953 -0.7708 1.1337 8 1 1.7326 -0.2708 2.0660 9 6 1.3891 -2.1755 1.1200 10 6 1.8329 -2.9347 2.3720 11 6 1.1375 -4.2707 2.4224 12 8 0.3632 -4.5843 1.5441 13 8 1.3756 -5.1138 3.4404 14 6 0.7201 -6.2930 3.4252 15 1 0.0399 -6.5224 2.6183 16 6 0.9193 -7.2107 4.4468 17 7 1.7460 -6.9309 5.4295 18 14 0.0123 -8.8436 4.4253 19 1 -0.8529 -8.9134 3.2205 20 1 0.9958 -9.9557 4.3942 21 1 -0.8274 -8.9594 5.6446 22 1 -0.3632 0.3377 0.9707 23 1 -0.3633 0.6718 -0.7777 24 1 -0.3634 -1.0093 -0.1929 25 1 1.5634 1.9258 -0.8329 26 1 1.7326 1.8608 0.9376 27 1 3.7814 0.8567 -1.0907 28 1 3.9099 2.3513 -0.1318 29 1 3.8901 1.0354 1.9553 30 1 5.2004 0.4704 0.8894 31 1 3.9099 -1.4304 1.8707 32 1 3.7813 -1.3842 0.0956 33 1 0.3017 -2.1018 1.1062 34 1 1.7285 -2.7090 0.2322 35 1 2.9116 -3.0876 2.3409 36 1 1.5733 -2.3563 3.2587 37 1 1.8855 -7.5725 6.1435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803854436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:52 Heat of formation + Delta-G solvation = -96.070969 kcal Electronic energy + Delta-G solvation = -17533.707519 eV Core-core repulsion = 14696.601649 eV Total energy + Delta-G solvation = -2837.105870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52581 -38.72899 -35.34732 -33.73164 -33.37403 -32.08651 -29.52414 -26.76950 -25.72557 -24.32398 -22.86018 -21.12558 -19.74133 -19.47769 -17.66611 -16.63319 -15.60769 -15.35976 -15.24912 -14.48406 -14.38183 -14.25692 -14.14578 -13.92792 -13.19118 -12.71302 -12.42839 -12.26299 -11.99721 -11.69850 -11.48555 -11.44809 -11.24569 -11.07917 -10.76210 -10.64862 -10.41014 -10.34832 -10.25311 -10.00276 -9.73860 -8.94754 -8.53860 -8.31251 -6.36824 -4.04456 3.13073 3.21532 3.29285 3.60732 3.79876 4.03589 4.58694 4.73128 4.84394 4.86676 5.04829 5.16069 5.27826 5.38446 5.41268 5.44682 5.51640 5.58587 5.63603 5.73334 5.77545 5.85207 5.92725 5.96572 6.02700 6.08610 6.16131 6.32803 6.48800 6.60806 6.87639 7.08124 7.14303 7.44892 8.00801 8.78384 9.12535 9.92584 10.81629 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050343 B = 0.004450 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.050599 B = 6290.734900 C = 6683.656393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.087 3.913 8 H 0.041 0.959 9 C -0.099 4.099 10 C -0.102 4.102 11 C 0.398 3.602 12 O -0.558 6.558 13 O -0.218 6.218 14 C -0.381 4.381 15 H 0.095 0.905 16 C 0.041 3.959 17 N -0.868 5.868 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 15.345 -7.488 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.021 4.021 8 H 0.059 0.941 9 C -0.137 4.137 10 C -0.141 4.141 11 C 0.244 3.756 12 O -0.455 6.455 13 O -0.126 6.126 14 C -0.458 4.458 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.505 5.505 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.909 14.930 -7.934 17.156 hybrid contribution -0.707 -0.375 0.849 1.167 sum 2.202 14.555 -7.085 16.337 Atomic orbital electron populations 1.22437 0.87313 1.03070 0.99918 1.61888 1.07658 1.12980 1.43784 1.22082 0.95638 0.89402 1.00090 1.21590 0.94504 0.99833 0.99552 1.21596 0.99880 0.96177 0.98310 1.21720 0.93918 0.96787 1.03006 1.21689 0.95029 0.94193 0.91216 0.94118 1.21450 1.01422 0.93043 0.97801 1.21100 1.01282 0.92162 0.99537 1.23235 0.83031 0.87447 0.81850 1.90545 1.37694 1.77437 1.39828 1.83886 1.59859 1.26540 1.42279 1.21269 1.24068 0.90421 1.10006 0.88728 1.25323 0.96938 0.99353 0.94668 1.70002 1.34068 1.35876 1.10555 0.85636 0.78947 0.80166 0.78642 1.18978 1.20192 1.20227 0.95672 0.91828 0.90361 0.91027 0.95222 0.91122 0.91878 0.92379 0.91802 0.90878 0.90895 0.90800 0.90544 0.89039 0.89462 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.89 60.07 0.53 0.77 16 2 N -0.54 -6.67 4.75 -234.93 -1.11 -7.78 16 3 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 4 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 5 C -0.12 -1.21 6.01 -26.60 -0.16 -1.37 16 6 C -0.12 -1.38 5.11 -26.65 -0.14 -1.51 16 7 C 0.09 1.14 1.89 -67.72 -0.13 1.01 16 8 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 9 C -0.10 -1.59 3.78 -26.73 -0.10 -1.69 16 10 C -0.10 -1.86 5.44 -27.89 -0.15 -2.01 16 11 C 0.40 9.97 7.91 36.01 0.28 10.25 16 12 O -0.56 -15.21 15.15 -19.05 -0.29 -15.50 16 13 O -0.22 -6.39 9.75 -20.71 -0.20 -6.60 16 14 C -0.38 -11.54 9.64 30.92 0.30 -11.24 16 15 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 16 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 17 N -0.87 -25.86 13.67 55.48 0.76 -25.10 16 18 Si 0.94 21.66 29.55 -169.99 -5.02 16.64 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 23 H 0.06 0.63 7.97 -51.93 -0.41 0.22 16 24 H 0.08 1.00 6.51 -51.93 -0.34 0.67 16 25 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 26 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.14 -51.94 -0.42 0.15 16 31 H 0.07 0.85 6.73 -51.92 -0.35 0.50 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.51 6.85 -51.93 -0.36 1.15 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -33.16 298.50 -7.12 -40.27 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.90 Total: -1.02 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.16 Total: -5.42 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: -0.36 Total: -32.88 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.49 Total: -22.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.16 -7.12 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803854436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.796 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds