Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41605 * 113.99713 * 2 1 4 4 C 1.34776 * 120.00029 * 262.07272 * 3 2 1 5 5 O 1.21280 * 119.99855 * 181.59877 * 4 3 2 6 6 C 1.50692 * 120.00186 * 1.59461 * 4 3 2 7 7 H 1.08998 * 109.47428 * 311.05134 * 6 4 3 8 8 C 1.53003 * 109.47029 * 71.04816 * 6 4 3 9 9 C 1.50696 * 109.47288 * 191.04993 * 6 4 3 10 10 H 1.08002 * 120.00021 * 359.97438 * 9 6 4 11 11 C 1.37878 * 120.00108 * 180.02562 * 9 6 4 12 12 N 1.31518 * 120.00191 * 0.02562 * 11 9 6 13 13 Si 1.86808 * 120.00050 * 179.97438 * 11 9 6 14 14 H 1.48493 * 109.46816 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46861 * 120.00036 * 13 11 9 16 16 H 1.48498 * 109.46997 * 239.99872 * 13 11 9 17 17 C 1.46497 * 119.99884 * 82.07845 * 3 2 1 18 18 C 1.54967 * 110.92738 * 126.53665 * 17 3 2 19 19 C 1.54263 * 104.15989 * 156.29418 * 18 17 3 20 20 C 1.53879 * 106.64202 * 336.44600 * 19 18 17 21 21 C 1.54259 * 106.59660 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47228 * 285.11501 * 1 2 3 23 23 H 1.08997 * 109.46963 * 45.12044 * 1 2 3 24 24 H 1.09002 * 109.46852 * 165.11924 * 1 2 3 25 25 H 1.09000 * 109.46902 * 160.76679 * 8 6 4 26 26 H 1.08997 * 109.47164 * 280.76617 * 8 6 4 27 27 H 1.09000 * 109.47208 * 40.76658 * 8 6 4 28 28 H 0.96999 * 119.99994 * 180.02562 * 12 11 9 29 29 H 1.09002 * 110.67379 * 3.22961 * 17 3 2 30 30 H 1.09000 * 110.47093 * 37.64065 * 18 17 3 31 31 H 1.09001 * 110.53093 * 274.97176 * 18 17 3 32 32 H 1.09000 * 110.03114 * 217.13690 * 19 18 17 33 33 H 1.08998 * 110.03498 * 95.75972 * 19 18 17 34 34 H 1.09002 * 110.02934 * 119.26000 * 20 19 18 35 35 H 1.08997 * 110.02786 * 240.64048 * 20 19 18 36 36 H 1.09001 * 110.48711 * 142.28848 * 21 20 19 37 37 H 1.09002 * 110.48302 * 264.79624 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.4260 1.8438 -1.1560 5 8 2.9456 2.9397 -1.1522 6 6 2.2513 1.0974 -2.4534 7 1 2.6152 0.0765 -2.3371 8 6 0.7688 1.0704 -2.8306 9 6 3.0336 1.7888 -3.5400 10 1 3.6003 2.6799 -3.3139 11 6 3.0251 1.2843 -4.8232 12 7 2.3338 0.2000 -5.0990 13 14 3.9943 2.1419 -6.1704 14 1 4.6810 3.3312 -5.6056 15 1 5.0040 1.2055 -6.7264 16 1 3.0689 2.5700 -7.2500 17 6 2.1430 2.0339 1.2566 18 6 3.6053 2.5028 1.4649 19 6 3.4821 3.7124 2.4144 20 6 2.0554 4.2630 2.2438 21 6 1.3606 3.3693 1.1959 22 1 -0.3633 0.2680 0.9921 23 1 -0.3633 0.7251 -0.7282 24 1 -0.3633 -0.9932 -0.2639 25 1 0.6682 0.8495 -3.8932 26 1 0.2601 0.3010 -2.2498 27 1 0.3219 2.0414 -2.6174 28 1 2.3282 -0.1551 -6.0016 29 1 1.8086 1.4282 2.0989 30 1 4.0472 2.8062 0.5159 31 1 4.1976 1.7134 1.9277 32 1 4.2117 4.4755 2.1434 33 1 3.6393 3.3954 3.4453 34 1 1.5198 4.2123 3.1919 35 1 2.0927 5.2936 1.8910 36 1 0.3154 3.2114 1.4620 37 1 1.4376 3.8143 0.2038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832162784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -54.983793 kcal Electronic energy + Delta-G solvation = -18624.944074 eV Core-core repulsion = 15789.619878 eV Total energy + Delta-G solvation = -2835.324196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22086 -38.37434 -38.09006 -35.74466 -33.23814 -32.47876 -29.64837 -28.82546 -27.61573 -26.66603 -24.52937 -22.37821 -21.18291 -20.40585 -18.85229 -18.29626 -17.35371 -16.76672 -16.60487 -16.33694 -15.57887 -15.34682 -15.04782 -14.67315 -14.48484 -14.29152 -13.80189 -13.39830 -13.06091 -12.85625 -12.72304 -12.48226 -12.40809 -12.23692 -12.10314 -12.04322 -11.99454 -11.82012 -11.40191 -11.20118 -10.95798 -10.52861 -10.11710 -9.82793 -8.15403 -6.27380 1.02768 1.39028 1.40609 1.54371 1.75996 2.42495 3.13320 3.28293 3.66201 3.81540 3.90151 4.32638 4.39300 4.44394 4.47192 4.53271 4.55754 4.62759 4.68144 4.77345 4.81255 4.87811 4.96018 5.00466 5.07168 5.18830 5.26025 5.32402 5.46273 5.51950 5.66563 5.74209 5.91400 6.19373 6.64934 6.82354 7.30704 7.42993 8.90685 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.007763 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.493621 B = 3605.995137 C = 4266.161967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.157 6.157 3 N -0.479 5.479 4 C 0.534 3.466 5 O -0.546 6.546 6 C 0.030 3.970 7 H 0.029 0.971 8 C -0.121 4.121 9 C -0.528 4.528 10 H 0.051 0.949 11 C 0.017 3.983 12 N -0.911 5.911 13 Si 0.957 3.043 14 H -0.277 1.277 15 H -0.274 1.274 16 H -0.273 1.273 17 C 0.136 3.864 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.140 4.140 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 1.890 14.804 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.161 6.161 3 N -0.257 5.257 4 C 0.326 3.674 5 O -0.424 6.424 6 C 0.009 3.991 7 H 0.047 0.953 8 C -0.179 4.179 9 C -0.566 4.566 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.551 5.551 13 Si 0.783 3.217 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.198 1.198 17 C 0.035 3.965 18 C -0.184 4.184 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.178 4.178 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.139 0.861 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.374 2.171 14.663 15.454 hybrid contribution 0.231 0.151 -1.122 1.156 sum -4.143 2.322 13.540 14.349 Atomic orbital electron populations 1.23730 0.80437 1.04919 1.02204 1.90577 1.21764 1.06922 1.96811 1.50317 1.58249 1.09784 1.07386 1.21556 0.75348 0.85304 0.85193 1.90508 1.44406 1.21626 1.85871 1.18698 0.96300 0.95413 0.88690 0.95282 1.21696 0.94512 0.97962 1.03722 1.21354 1.29475 1.11663 0.94110 0.93092 1.25639 0.96468 0.95670 1.00370 1.70002 1.41666 1.22306 1.21106 0.85516 0.78751 0.78554 0.78917 1.20199 1.19990 1.19826 1.22611 0.96913 0.92137 0.84803 1.22809 0.95799 0.98949 1.00800 1.22001 0.97209 0.96166 0.99493 1.22001 0.95478 0.98563 0.98819 1.22775 0.99597 0.95252 1.00225 0.91185 0.92669 0.86070 0.91263 0.92631 0.95975 0.92590 0.86070 0.92436 0.90983 0.92101 0.89224 0.88978 0.91943 0.90159 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.41 9.98 113.37 1.13 0.72 16 2 O -0.16 -5.52 10.56 -38.79 -0.41 -5.93 16 3 N -0.48 -18.40 3.05 -436.31 -1.33 -19.73 16 4 C 0.53 25.65 6.20 87.65 0.54 26.19 16 5 O -0.55 -28.48 11.60 -3.03 -0.04 -28.51 16 6 C 0.03 1.61 2.06 -12.29 -0.03 1.58 16 7 H 0.03 1.68 8.04 -2.39 -0.02 1.66 16 8 C -0.12 -5.82 8.13 71.98 0.59 -5.24 16 9 C -0.53 -31.32 8.36 25.60 0.21 -31.11 16 10 H 0.05 3.19 6.81 -2.91 -0.02 3.17 16 11 C 0.02 1.00 5.19 84.65 0.44 1.43 16 12 N -0.91 -52.53 11.37 21.45 0.24 -52.29 16 13 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.14 4.13 3.61 46.31 0.17 4.30 16 18 C -0.15 -4.49 6.18 31.70 0.20 -4.30 16 19 C -0.11 -2.58 6.80 31.32 0.21 -2.36 16 20 C -0.11 -2.47 6.80 31.32 0.21 -2.25 16 21 C -0.14 -3.98 6.21 31.67 0.20 -3.79 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.61 5.85 -2.39 -0.01 1.60 16 24 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.07 3.70 5.81 -2.39 -0.01 3.69 16 26 H 0.05 2.28 4.99 -2.39 -0.01 2.26 16 27 H 0.02 1.00 7.99 -2.39 -0.02 0.98 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.06 2.32 5.58 -2.39 -0.01 2.30 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.75 6.24 -2.39 -0.01 1.74 16 Total: -1.00 -67.76 289.87 5.42 -62.34 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.05 Total: 11.39 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 3.87 Total: -14.83 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.09 Total: -72.02 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.44 Total: -34.45 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.76 5.42 -62.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832162784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.355 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds