Wall clock time and date at job start Mon Mar 30 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47191 * 2 1 4 4 C 1.42903 * 114.00202 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54768 * 4.32497 * 4 3 2 6 6 C 1.52996 * 117.50092 * 149.99657 * 4 3 2 7 7 H 1.08999 * 117.49935 * 0.02562 * 6 4 3 8 8 C 1.50702 * 117.50055 * 215.00254 * 6 4 3 9 9 O 1.21283 * 119.99575 * 291.39655 * 8 6 4 10 10 N 1.34771 * 120.00335 * 111.39114 * 8 6 4 11 11 C 1.46506 * 119.99594 * 0.02562 * 10 8 6 12 12 C 1.46501 * 120.00308 * 180.02562 * 10 8 6 13 13 C 1.50700 * 109.46743 * 269.99953 * 12 10 8 14 14 H 1.07996 * 120.00425 * 0.02562 * 13 12 10 15 15 C 1.37879 * 119.99720 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99952 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46972 * 90.00054 * 17 15 13 19 19 H 1.48502 * 109.47062 * 210.00132 * 17 15 13 20 20 H 1.48498 * 109.47168 * 329.99997 * 17 15 13 21 21 C 1.53000 * 117.51899 * 218.63075 * 4 3 2 22 22 H 1.08996 * 117.49558 * 0.02562 * 21 4 3 23 23 C 1.53001 * 117.50037 * 145.02606 * 21 4 3 24 24 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47074 * 300.00063 * 1 2 3 26 26 H 1.08995 * 109.47536 * 60.00074 * 1 2 3 27 27 H 1.08998 * 109.46942 * 239.99712 * 2 1 3 28 28 H 1.09003 * 109.46983 * 120.00176 * 2 1 3 29 29 H 1.09001 * 109.47060 * 90.00388 * 11 10 8 30 30 H 1.09004 * 109.47073 * 209.99877 * 11 10 8 31 31 H 1.09000 * 109.47212 * 329.99960 * 11 10 8 32 32 H 1.09000 * 109.46877 * 29.99967 * 12 10 8 33 33 H 1.09000 * 109.47251 * 150.00072 * 12 10 8 34 34 H 0.96994 * 119.99936 * 179.97438 * 16 15 13 35 35 H 1.08992 * 109.46792 * 128.61756 * 23 21 4 36 36 H 1.08997 * 109.46963 * 248.62002 * 23 21 4 37 37 H 1.09000 * 109.46590 * 8.61687 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9769 0.5196 -0.0751 6 6 4.0421 2.6875 -0.6793 7 1 3.3575 3.4092 -1.1250 8 6 5.3529 2.5039 -1.3997 9 8 6.3638 2.2740 -0.7702 10 7 5.4020 2.5950 -2.7434 11 6 4.1809 2.8732 -3.5037 12 6 6.6762 2.4159 -3.4438 13 6 7.3660 3.7488 -3.5801 14 1 6.9020 4.6400 -3.1843 15 6 8.5902 3.8303 -4.2093 16 7 9.1556 2.7448 -4.6909 17 14 9.4457 5.4823 -4.3777 18 1 10.3162 5.7116 -3.1967 19 1 10.2729 5.4879 -5.6110 20 1 8.4280 6.5607 -4.4594 21 6 4.0522 2.5725 0.8464 22 1 3.3744 3.2182 1.4046 23 6 5.3925 2.2797 1.5239 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0612 3.9506 -3.6173 30 1 4.2522 2.4099 -4.4878 31 1 3.3210 2.4660 -2.9719 32 1 7.3103 1.7350 -2.8760 33 1 6.4912 1.9996 -4.4340 34 1 10.0166 2.8022 -5.1339 35 1 6.0991 3.0760 1.2904 36 1 5.2498 2.2254 2.6031 37 1 5.7831 1.3291 1.1607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906399556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:21 Heat of formation + Delta-G solvation = -77.267889 kcal Electronic energy + Delta-G solvation = -17641.735562 eV Core-core repulsion = 14805.445054 eV Total energy + Delta-G solvation = -2836.290507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22523 -39.19957 -37.00301 -36.15571 -34.71614 -31.84303 -30.29181 -29.07880 -27.31415 -25.79411 -23.74082 -23.36369 -21.98325 -19.66854 -18.77910 -18.48810 -17.39449 -17.04234 -16.44995 -16.28764 -16.15678 -15.46657 -14.64291 -14.22206 -14.18620 -13.88113 -13.77023 -13.51251 -13.47232 -13.22806 -13.15829 -13.04228 -12.76264 -12.70000 -12.55149 -12.18756 -12.11752 -11.75855 -11.67184 -11.18693 -10.65544 -10.52542 -10.00908 -9.43056 -8.23555 -6.38522 1.35859 1.38869 1.48466 1.57198 2.15336 2.38358 2.62694 2.81681 3.05767 3.62732 3.72050 3.89727 4.02402 4.20606 4.34340 4.38985 4.40992 4.50236 4.56336 4.68539 4.77181 4.89350 4.92706 4.97497 5.01110 5.06102 5.12840 5.19802 5.30740 5.51391 5.56838 5.83079 6.04775 6.18127 6.67694 6.76479 7.26759 7.46728 8.83464 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036659 B = 0.005311 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.608531 B = 5270.355150 C = 5627.401391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.363 6.363 4 C 0.065 3.935 5 H 0.111 0.889 6 C -0.194 4.194 7 H 0.141 0.859 8 C 0.525 3.475 9 O -0.579 6.579 10 N -0.608 5.608 11 C 0.084 3.916 12 C 0.260 3.740 13 C -0.544 4.544 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.263 1.263 21 C -0.116 4.116 22 H 0.136 0.864 23 C -0.104 4.104 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.001 0.999 33 H 0.024 0.976 34 H 0.268 0.732 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.379 -3.465 8.361 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.281 6.281 4 C 0.006 3.994 5 H 0.129 0.871 6 C -0.216 4.216 7 H 0.159 0.841 8 C 0.314 3.686 9 O -0.459 6.459 10 N -0.339 5.339 11 C -0.059 4.059 12 C 0.139 3.861 13 C -0.583 4.583 14 H 0.069 0.931 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.188 1.188 21 C -0.135 4.135 22 H 0.154 0.846 23 C -0.161 4.161 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.019 0.981 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.850 -3.507 8.538 19.212 hybrid contribution 1.091 0.541 -0.571 1.344 sum -15.759 -2.966 7.967 17.906 Atomic orbital electron populations 1.21760 0.91953 1.03632 1.03027 1.22833 0.96797 0.82260 1.01124 1.87813 1.17683 1.28714 1.93936 1.22655 0.82244 0.92989 1.01483 0.87131 1.22839 0.96333 1.05173 0.97228 0.84137 1.20169 0.89816 0.76578 0.82084 1.90640 1.38059 1.50876 1.66373 1.48145 1.10603 1.68888 1.06287 1.21852 0.85678 1.01387 0.96936 1.18791 0.80681 0.95837 0.90808 1.21695 1.04964 0.94375 1.37239 0.93099 1.25852 0.97558 1.00837 0.94785 1.70046 1.17829 1.29875 1.39021 0.85412 0.78456 0.79188 0.77736 1.20534 1.19796 1.18767 1.22951 0.99237 1.01206 0.90117 0.84587 1.21232 0.93847 1.01563 0.99428 0.88971 0.91779 0.92067 0.92814 0.92080 0.92586 0.90943 0.89083 0.98124 0.95812 0.92339 0.93632 0.90613 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.36 -8.60 10.60 -148.98 -1.58 -10.18 16 4 C 0.07 1.75 5.79 30.59 0.18 1.93 16 5 H 0.11 3.03 7.83 -2.39 -0.02 3.01 16 6 C -0.19 -6.15 4.75 -11.54 -0.05 -6.20 16 7 H 0.14 3.92 7.26 -2.39 -0.02 3.90 16 8 C 0.52 22.70 7.44 87.66 0.65 23.35 16 9 O -0.58 -29.70 12.68 -3.04 -0.04 -29.74 16 10 N -0.61 -27.08 2.86 -851.11 -2.43 -29.51 16 11 C 0.08 2.74 10.05 127.77 1.28 4.02 16 12 C 0.26 14.40 5.20 85.63 0.45 14.84 16 13 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 17 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.12 -3.22 6.36 -10.79 -0.07 -3.29 16 22 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 23 C -0.10 -3.19 8.43 71.98 0.61 -2.58 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.26 7.89 -2.38 -0.02 2.24 16 31 H 0.09 2.37 6.64 -2.39 -0.02 2.35 16 32 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 33 H 0.02 1.33 7.89 -2.39 -0.02 1.31 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.04 1.66 7.26 -2.39 -0.02 1.64 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.54 7.01 -2.39 -0.02 1.52 16 Total: -1.00 -71.90 310.42 4.25 -67.65 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.03 Total: 9.42 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.95 Total: 1.21 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.15 Total: -85.96 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.62 Total: -39.92 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.90 4.25 -67.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906399556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.613 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds