Wall clock time and date at job start Mon Mar 30 2020 04:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46692 * 2 1 4 4 C 1.42902 * 114.00150 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54868 * 4.32932 * 4 3 2 6 6 C 1.53000 * 117.52189 * 218.63243 * 4 3 2 7 7 H 1.09002 * 117.49711 * 0.02562 * 6 4 3 8 8 C 1.52997 * 117.50098 * 145.02745 * 6 4 3 9 9 C 1.52995 * 59.99961 * 252.51863 * 6 4 3 10 10 H 1.09005 * 117.51362 * 252.51874 * 9 6 4 11 11 C 1.50701 * 117.50174 * 107.48920 * 9 6 4 12 12 O 1.21278 * 119.99878 * 359.97438 * 11 9 6 13 13 N 1.34780 * 119.99973 * 179.97438 * 11 9 6 14 14 C 1.46497 * 119.99868 * 0.02562 * 13 11 9 15 15 C 1.46500 * 119.99743 * 180.02562 * 13 11 9 16 16 C 1.50695 * 109.47109 * 89.99926 * 15 13 11 17 17 H 1.07995 * 120.00496 * 359.97438 * 16 15 13 18 18 C 1.37880 * 119.99572 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 H 1.09000 * 109.47429 * 60.00205 * 1 2 3 25 25 H 1.09003 * 109.46654 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47482 * 299.99679 * 1 2 3 27 27 H 1.09005 * 109.47343 * 240.00498 * 2 1 3 28 28 H 1.08993 * 109.47221 * 120.00146 * 2 1 3 29 29 H 1.08991 * 109.47471 * 128.62317 * 8 6 4 30 30 H 1.09005 * 109.46908 * 248.62705 * 8 6 4 31 31 H 1.08999 * 109.47103 * 8.62144 * 8 6 4 32 32 H 1.08999 * 109.47065 * 269.99615 * 14 13 11 33 33 H 1.09000 * 109.47299 * 30.00512 * 14 13 11 34 34 H 1.09003 * 109.46902 * 150.00149 * 14 13 11 35 35 H 1.09002 * 109.47129 * 329.99760 * 15 13 11 36 36 H 1.08998 * 109.46845 * 210.00566 * 15 13 11 37 37 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.9770 0.5199 -0.0733 6 6 4.0514 2.5729 0.8478 7 1 3.3731 3.2188 1.4053 8 6 5.3911 2.2804 1.5264 9 6 4.0424 2.6877 -0.6778 10 1 4.9908 2.5546 -1.1984 11 6 3.0964 3.6853 -1.2951 12 8 2.3792 4.3595 -0.5867 13 7 3.0475 3.8282 -2.6344 14 6 3.9135 3.0133 -3.4901 15 6 2.1283 4.7984 -3.2344 16 6 2.8215 6.1295 -3.3704 17 1 3.8442 6.2418 -3.0423 18 6 2.1498 7.2041 -3.9137 19 7 0.9041 7.0676 -4.3127 20 14 3.0092 8.8540 -4.0830 21 1 4.2051 8.7026 -4.9503 22 1 3.4282 9.3338 -2.7416 23 1 2.0778 9.8371 -4.6922 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 6.0979 3.0766 1.2934 30 1 5.2475 2.2263 2.6056 31 1 5.7821 1.3298 1.1638 32 1 4.8576 3.5335 -3.6519 33 1 4.1046 2.0553 -3.0065 34 1 3.4225 2.8449 -4.4486 35 1 1.2505 4.9091 -2.5976 36 1 1.8206 4.4465 -4.2191 37 1 0.4579 6.2107 -4.2252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906399558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:27 Heat of formation + Delta-G solvation = -60.713949 kcal Electronic energy + Delta-G solvation = -17792.551203 eV Core-core repulsion = 14956.978528 eV Total energy + Delta-G solvation = -2835.572675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67823 -37.81509 -35.68317 -34.69641 -32.72687 -30.98989 -28.68239 -27.33536 -25.69792 -23.71995 -22.86376 -21.92380 -20.66660 -18.58622 -17.21982 -16.78966 -15.64925 -15.55923 -15.34438 -15.03314 -13.91035 -13.69366 -13.55185 -13.22937 -12.91014 -12.55526 -12.42208 -12.34403 -12.22672 -12.14041 -11.84808 -11.38922 -11.24714 -11.17215 -10.88688 -10.80510 -10.53673 -10.06048 -9.95391 -9.14036 -9.03950 -8.79815 -8.32671 -7.50627 -6.32640 -4.03812 3.16499 3.46149 3.46804 3.51113 3.68359 3.90138 4.13044 4.58906 4.80364 4.82029 4.95188 5.01631 5.18973 5.25260 5.27424 5.38965 5.46889 5.48280 5.61726 5.64243 5.72335 5.77033 5.85712 5.96065 6.02225 6.10391 6.17206 6.38934 6.88758 7.21116 7.27919 7.52014 8.11505 8.40610 8.50946 8.84314 9.17446 9.65978 11.04583 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.006172 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.640726 B = 4535.389272 C = 5044.488896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.343 6.343 4 C 0.046 3.954 5 H 0.114 0.886 6 C -0.132 4.132 7 H 0.122 0.878 8 C -0.119 4.119 9 C -0.186 4.186 10 H 0.123 0.877 11 C 0.544 3.456 12 O -0.534 6.534 13 N -0.598 5.598 14 C 0.090 3.910 15 C 0.238 3.762 16 C -0.604 4.604 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.911 5.911 20 Si 1.072 2.928 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.020 0.980 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.088 -16.149 7.243 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.261 6.261 4 C -0.013 4.013 5 H 0.131 0.869 6 C -0.151 4.151 7 H 0.140 0.860 8 C -0.176 4.176 9 C -0.207 4.207 10 H 0.140 0.860 11 C 0.330 3.670 12 O -0.411 6.411 13 N -0.330 5.330 14 C -0.054 4.054 15 C 0.118 3.882 16 C -0.643 4.643 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.547 5.547 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.214 1.214 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.336 -14.060 7.063 16.962 hybrid contribution 0.546 -1.822 0.290 1.924 sum 6.882 -15.882 7.353 18.806 Atomic orbital electron populations 1.21736 0.93612 1.01967 1.03627 1.22526 0.95831 0.83772 0.99759 1.88052 1.18159 1.26012 1.93835 1.22817 0.82610 0.92785 1.03098 0.86898 1.22833 0.99144 1.01425 0.91728 0.85999 1.21362 0.94572 1.01380 1.00290 1.23007 1.01017 0.99926 0.96770 0.85962 1.19099 0.82954 0.82683 0.82296 1.90641 1.43155 1.46485 1.60801 1.47797 1.40706 1.39478 1.05047 1.21566 0.94858 0.93840 0.95141 1.19318 0.89376 0.87123 0.92389 1.22263 1.00939 0.96048 1.45076 0.93149 1.25820 0.95939 1.03246 0.93563 1.70796 1.11289 1.27880 1.44726 0.83502 0.74951 0.75078 0.76447 1.21497 1.21416 1.20663 0.91607 0.91177 0.91730 0.93412 0.93382 0.91633 0.91787 0.92645 0.93354 0.92609 0.91700 0.94903 0.96241 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 37.16 0.38 -1.32 16 2 C 0.06 0.68 6.53 37.16 0.24 0.93 16 3 O -0.34 -5.67 10.02 -35.23 -0.35 -6.02 16 4 C 0.05 0.65 6.05 -26.73 -0.16 0.48 16 5 H 0.11 1.16 7.83 -51.93 -0.41 0.75 16 6 C -0.13 -1.94 5.87 -90.62 -0.53 -2.48 16 7 H 0.12 2.14 7.67 -51.93 -0.40 1.74 16 8 C -0.12 -1.24 10.19 37.16 0.38 -0.86 16 9 C -0.19 -3.07 4.52 -91.78 -0.41 -3.48 16 10 H 0.12 1.68 7.26 -51.93 -0.38 1.30 16 11 C 0.54 12.48 6.97 -10.98 -0.08 12.40 16 12 O -0.53 -14.74 15.84 5.56 0.09 -14.65 16 13 N -0.60 -13.84 2.86 -182.96 -0.52 -14.36 16 14 C 0.09 1.56 10.05 59.85 0.60 2.16 16 15 C 0.24 6.58 4.52 -5.20 -0.02 6.56 16 16 C -0.60 -18.15 9.39 -34.44 -0.32 -18.47 16 17 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 18 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 19 N -0.91 -28.70 13.65 55.43 0.76 -27.94 16 20 Si 1.07 26.40 29.90 -169.99 -5.08 21.32 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.77 6.64 -51.93 -0.34 0.42 16 34 H 0.06 1.07 7.89 -51.93 -0.41 0.66 16 35 H 0.03 1.02 7.29 -51.93 -0.38 0.64 16 36 H 0.02 0.54 7.76 -51.93 -0.40 0.13 16 37 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -36.63 313.82 -6.42 -43.05 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.01 Total: -2.49 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.02 Total: -3.63 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.23 Total: -42.30 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.26 Total: -20.67 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.08 Total: 21.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.63 -6.42 -43.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906399558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.663 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds