Wall clock time and date at job start Mon Mar 30 2020 03:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47426 * 2 1 4 4 C 1.34224 * 117.00289 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00059 * 179.97438 * 4 3 2 7 7 H 1.09001 * 115.56236 * 34.31185 * 6 4 3 8 8 C 1.53077 * 117.49324 * 248.60120 * 6 4 3 9 9 C 1.53002 * 59.98450 * 252.51879 * 8 6 4 10 10 H 1.08994 * 117.50146 * 107.50156 * 9 8 6 11 11 C 1.53006 * 117.49547 * 252.50383 * 9 8 6 12 12 N 1.46497 * 109.46876 * 243.74474 * 11 9 8 13 13 C 1.36945 * 120.00008 * 89.99773 * 12 11 9 14 14 H 1.07997 * 119.99462 * 33.38466 * 13 12 11 15 15 C 1.38810 * 120.00246 * 213.37949 * 13 12 11 16 16 N 1.31623 * 119.99632 * 22.55869 * 15 13 12 17 17 Si 1.86796 * 120.00135 * 202.83378 * 15 13 12 18 18 H 1.48493 * 109.47541 * 90.00349 * 17 15 13 19 19 H 1.48501 * 109.47093 * 210.00310 * 17 15 13 20 20 H 1.48499 * 109.46796 * 329.99920 * 17 15 13 21 21 C 1.46495 * 120.00277 * 270.00270 * 12 11 9 22 22 C 1.53004 * 109.47157 * 274.67395 * 21 12 11 23 23 H 1.09002 * 109.47176 * 59.99408 * 1 2 3 24 24 H 1.09000 * 109.47574 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47085 * 299.99974 * 1 2 3 26 26 H 1.08996 * 109.46617 * 240.00032 * 2 1 3 27 27 H 1.09002 * 109.47230 * 120.00039 * 2 1 3 28 28 H 1.09003 * 117.51203 * 145.03817 * 8 6 4 29 29 H 1.09001 * 117.51219 * 359.97438 * 8 6 4 30 30 H 1.09000 * 109.47081 * 123.74574 * 11 9 8 31 31 H 1.08999 * 109.47231 * 3.74276 * 11 9 8 32 32 H 0.96997 * 119.99814 * 179.97438 * 16 15 13 33 33 H 1.08998 * 109.47464 * 34.67093 * 21 12 11 34 34 H 1.08996 * 109.47547 * 154.67371 * 21 12 11 35 35 H 1.08998 * 109.46687 * 300.00173 * 22 21 12 36 36 H 1.08996 * 109.46912 * 59.99587 * 22 21 12 37 37 H 1.09000 * 109.47406 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.3502 3.6826 0.5531 8 6 4.6483 3.4006 -1.2658 9 6 5.4450 3.0713 -0.0018 10 1 6.0309 2.1523 -0.0013 11 6 6.0515 4.2412 0.7757 12 7 7.5125 4.1352 0.7562 13 6 8.2288 4.7298 -0.2483 14 1 7.8826 5.6558 -0.6831 15 6 9.3997 4.1425 -0.7073 16 7 9.6026 2.8539 -0.5310 17 14 10.6909 5.1821 -1.5682 18 1 11.6460 5.7165 -0.5647 19 1 11.4238 4.3460 -2.5527 20 1 10.0295 6.3101 -2.2720 21 6 8.2074 3.3932 1.8110 22 6 8.4437 4.3130 3.0106 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.5563 4.4506 -1.5436 29 1 4.7105 2.6980 -2.0969 30 1 5.6990 4.2139 1.8068 31 1 5.7492 5.1807 0.3130 32 1 10.4206 2.4434 -0.8521 33 1 7.5982 2.5435 2.1192 34 1 9.1651 3.0355 1.4332 35 1 9.0529 5.1626 2.7024 36 1 7.4860 4.6706 3.3885 37 1 8.9603 3.7607 3.7957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929463282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:58 Heat of formation + Delta-G solvation = -66.399325 kcal Electronic energy + Delta-G solvation = -17429.419823 eV Core-core repulsion = 14593.600612 eV Total energy + Delta-G solvation = -2835.819211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66930 -38.96478 -37.66207 -36.67119 -33.38438 -32.64180 -31.24179 -28.14033 -26.29365 -25.12124 -23.64318 -22.87766 -21.63134 -20.87455 -19.01146 -18.48296 -17.68921 -17.49188 -16.70341 -15.73089 -15.65980 -15.43698 -14.94272 -14.88654 -14.08458 -13.82311 -13.64157 -13.61612 -13.18354 -12.96320 -12.86957 -12.74752 -12.51708 -12.43065 -12.29266 -11.99901 -11.88333 -11.60432 -11.56051 -11.47217 -11.29500 -10.81793 -10.46674 -8.59724 -7.78747 -5.35480 1.01113 1.48691 1.51134 1.58727 1.59736 2.54735 2.85938 3.29213 3.60089 3.71196 3.91244 3.97259 4.05123 4.07918 4.17021 4.31948 4.57955 4.65381 4.74891 4.86461 4.87724 4.91149 4.94212 4.97333 5.02508 5.12563 5.13577 5.19089 5.39856 5.49075 5.54212 5.71833 5.90838 6.49857 6.71117 7.20196 7.91419 8.42307 9.19541 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034773 B = 0.005063 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.036151 B = 5528.538631 C = 5806.529774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.492 3.508 5 O -0.547 6.547 6 C -0.163 4.163 7 H 0.165 0.835 8 C -0.130 4.130 9 C -0.130 4.130 10 H 0.066 0.934 11 C 0.174 3.826 12 N -0.596 5.596 13 C -0.257 4.257 14 H 0.067 0.933 15 C -0.043 4.043 16 N -0.923 5.923 17 Si 0.957 3.043 18 H -0.287 1.287 19 H -0.300 1.300 20 H -0.265 1.265 21 C 0.134 3.866 22 C -0.148 4.148 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.248 0.752 33 H 0.015 0.985 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.198 -0.302 2.293 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.337 3.663 5 O -0.437 6.437 6 C -0.182 4.182 7 H 0.182 0.818 8 C -0.167 4.167 9 C -0.151 4.151 10 H 0.085 0.915 11 C 0.048 3.952 12 N -0.316 5.316 13 C -0.388 4.388 14 H 0.085 0.915 15 C -0.240 4.240 16 N -0.568 5.568 17 Si 0.786 3.214 18 H -0.214 1.214 19 H -0.227 1.227 20 H -0.189 1.189 21 C 0.008 3.992 22 C -0.207 4.207 23 H 0.089 0.911 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.891 -0.697 2.251 16.065 hybrid contribution 1.099 -0.416 -0.585 1.313 sum -14.792 -1.113 1.666 14.927 Atomic orbital electron populations 1.21813 0.89665 1.04487 1.03941 1.23340 0.97569 0.79315 1.02276 1.86493 1.23298 1.33636 1.83602 1.23152 0.80611 0.91656 0.70865 1.90663 1.61533 1.44273 1.47226 1.22031 0.96455 0.92381 1.07344 0.81776 1.23093 1.00071 1.03305 0.90216 1.23378 0.88555 1.01893 1.01286 0.91529 1.20724 0.83475 0.93805 0.97196 1.44147 1.00702 1.61555 1.25220 1.19394 1.04877 1.01880 1.12621 0.91513 1.25777 1.02792 0.95475 0.99913 1.70160 1.26193 1.10220 1.50179 0.85424 0.79688 0.78566 0.77762 1.21413 1.22675 1.18950 1.20884 0.98488 0.92128 0.87739 1.22105 1.00557 1.00037 0.98008 0.91071 0.88059 0.90934 0.91850 0.91633 0.85094 0.89997 0.92105 0.91531 0.94274 0.96703 0.91640 0.94446 0.93032 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 2 C 0.05 1.08 6.19 71.98 0.45 1.52 16 3 O -0.35 -9.80 10.22 -51.36 -0.52 -10.33 16 4 C 0.49 16.59 7.74 71.24 0.55 17.14 16 5 O -0.55 -22.82 16.01 21.98 0.35 -22.47 16 6 C -0.16 -4.99 6.02 -11.51 -0.07 -5.06 16 7 H 0.16 3.84 8.14 -2.39 -0.02 3.82 16 8 C -0.13 -4.23 9.88 30.62 0.30 -3.93 16 9 C -0.13 -5.14 5.52 -10.79 -0.06 -5.20 16 10 H 0.07 3.36 7.67 -2.39 -0.02 3.34 16 11 C 0.17 6.90 5.97 86.38 0.52 7.41 16 12 N -0.60 -29.30 2.46 -702.01 -1.72 -31.03 16 13 C -0.26 -13.79 9.49 84.03 0.80 -12.99 16 14 H 0.07 3.47 7.93 -2.91 -0.02 3.45 16 15 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 16 N -0.92 -55.03 11.31 21.65 0.24 -54.78 16 17 Si 0.96 44.61 29.61 68.60 2.03 46.64 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C 0.13 6.49 5.97 86.38 0.52 7.00 16 22 C -0.15 -5.87 10.24 71.98 0.74 -5.13 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.13 3.59 8.03 -2.39 -0.02 3.57 16 29 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.07 2.40 7.77 -2.39 -0.02 2.38 16 32 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 33 H 0.01 0.71 8.11 -2.39 -0.02 0.69 16 34 H 0.07 3.68 5.30 -2.39 -0.01 3.67 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.31 315.76 6.30 -61.02 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.03 Total: 13.37 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.89 Total: -2.42 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -1.48 Total: -85.81 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.17 Total: -32.80 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.31 6.30 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929463282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.384 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds