Wall clock time and date at job start Mon Mar 30 2020 04:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45205 * 109.47001 * 2 1 4 4 C 1.34224 * 117.00133 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99653 * 359.97438 * 4 3 2 6 6 C 1.50692 * 120.00522 * 179.97438 * 4 3 2 7 7 H 1.09008 * 115.54779 * 34.27681 * 6 4 3 8 8 C 1.53000 * 117.50104 * 248.61067 * 6 4 3 9 9 C 1.53002 * 60.02940 * 252.47218 * 8 6 4 10 10 H 1.09000 * 117.49996 * 107.50493 * 9 8 6 11 11 C 1.53002 * 117.49773 * 252.51785 * 9 8 6 12 12 N 1.46894 * 109.47391 * 243.61072 * 11 9 8 13 13 C 1.46902 * 110.99938 * 66.04901 * 12 11 9 14 14 C 1.46901 * 111.00189 * 189.99818 * 12 11 9 15 15 C 1.50697 * 109.47094 * 169.99917 * 14 12 11 16 16 H 1.07996 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00024 * 180.02562 * 15 14 12 18 18 N 1.31514 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 89.99891 * 19 17 15 21 21 H 1.48504 * 109.47349 * 209.99918 * 19 17 15 22 22 H 1.48500 * 109.47269 * 329.99969 * 19 17 15 23 23 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47033 * 299.99983 * 1 2 3 25 25 H 1.09002 * 109.46998 * 59.99412 * 1 2 3 26 26 H 1.08995 * 109.46671 * 240.00085 * 2 1 3 27 27 H 1.08996 * 109.47047 * 119.99882 * 2 1 3 28 28 H 1.09002 * 117.49833 * 359.97323 * 8 6 4 29 29 H 1.09002 * 117.49953 * 144.97364 * 8 6 4 30 30 H 1.09007 * 109.46749 * 3.61344 * 11 9 8 31 31 H 1.08996 * 109.47128 * 123.60825 * 11 9 8 32 32 H 1.08997 * 109.47696 * 60.00031 * 13 12 11 33 33 H 1.09006 * 109.46972 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.46801 * 299.99368 * 13 12 11 35 35 H 1.08998 * 109.47523 * 290.00471 * 14 12 11 36 36 H 1.09003 * 109.46848 * 49.99957 * 14 12 11 37 37 H 0.97004 * 120.00251 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.3497 3.6827 0.5527 8 6 4.6477 3.4007 -1.2652 9 6 5.4455 3.0725 -0.0015 10 1 6.0324 2.1540 -0.0012 11 6 6.0512 4.2431 0.7755 12 7 7.5162 4.1368 0.7579 13 6 8.0404 4.3123 -0.6031 14 6 8.1251 5.1002 1.6848 15 6 9.5954 4.8013 1.8256 16 1 10.0336 3.9778 1.2814 17 6 10.3810 5.5786 2.6501 18 7 9.8470 6.5804 3.3140 19 14 12.2034 5.2077 2.8253 20 1 12.9637 5.9662 1.7996 21 1 12.6624 5.6093 4.1793 22 1 12.4329 3.7528 2.6362 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.7097 2.6981 -2.0962 29 1 4.5547 4.4506 -1.5431 30 1 5.7493 5.1821 0.3114 31 1 5.6973 4.2169 1.8061 32 1 7.7569 5.2958 -0.9778 33 1 9.1271 4.2285 -0.5875 34 1 7.6264 3.5423 -1.2540 35 1 7.9952 6.1103 1.2962 36 1 7.6432 5.0211 2.6593 37 1 10.3998 7.1276 3.8938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929808357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:58 Heat of formation + Delta-G solvation = -84.419819 kcal Electronic energy + Delta-G solvation = -16919.627208 eV Core-core repulsion = 14083.026570 eV Total energy + Delta-G solvation = -2836.600638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.70693 -39.32294 -37.80955 -36.74959 -34.55063 -32.63671 -29.75305 -28.46866 -26.65110 -25.54361 -23.65695 -22.72496 -21.74428 -21.04745 -18.94185 -18.43046 -17.75212 -17.53592 -16.75801 -16.09092 -15.73755 -15.62062 -15.09158 -14.83888 -14.40620 -13.86986 -13.80302 -13.63464 -13.22011 -13.00948 -12.96542 -12.76056 -12.62012 -12.51551 -12.45246 -12.21574 -11.97327 -11.66840 -11.55897 -11.49571 -11.16509 -11.02960 -10.60994 -8.99960 -8.20051 -6.29791 0.98907 1.41521 1.43128 1.54422 1.55919 2.41081 2.70788 3.12408 3.25045 3.61273 3.74238 3.87914 3.98530 4.05674 4.08927 4.32449 4.34280 4.55003 4.62796 4.68835 4.76793 4.83978 4.85046 4.91554 4.98382 5.12019 5.13231 5.20005 5.26606 5.32289 5.41832 5.66343 6.06534 6.34733 6.66075 6.68338 6.86480 7.39823 8.91058 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050390 B = 0.003707 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.528912 B = 7552.405033 C = 7621.752835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.495 3.505 5 O -0.540 6.540 6 C -0.165 4.165 7 H 0.155 0.845 8 C -0.122 4.122 9 C -0.113 4.113 10 H 0.103 0.897 11 C 0.087 3.913 12 N -0.553 5.553 13 C 0.043 3.957 14 C 0.207 3.793 15 C -0.525 4.525 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.267 1.267 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.053 0.947 34 H 0.077 0.923 35 H -0.032 1.032 36 H 0.003 0.997 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 -8.607 -9.456 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.340 3.660 5 O -0.430 6.430 6 C -0.185 4.185 7 H 0.172 0.828 8 C -0.159 4.159 9 C -0.132 4.132 10 H 0.121 0.879 11 C -0.041 4.041 12 N -0.278 5.278 13 C -0.105 4.105 14 C 0.081 3.919 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.119 0.881 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.096 0.904 35 H -0.015 1.015 36 H 0.022 0.978 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.150 -9.261 -9.174 21.542 hybrid contribution 0.769 0.629 0.317 1.043 sum -16.382 -8.631 -8.858 20.526 Atomic orbital electron populations 1.21826 0.90083 1.04451 1.03824 1.23338 0.97310 0.79124 1.02526 1.86493 1.23451 1.33795 1.83533 1.22921 0.80670 0.91371 0.71043 1.90663 1.61327 1.43980 1.47036 1.21932 0.95875 0.92752 1.07903 0.82786 1.23334 0.98252 1.04149 0.90141 1.22268 0.89841 1.00507 1.00609 0.87873 1.21628 0.88020 0.94989 0.99479 1.61939 1.04565 1.52752 1.08504 1.22192 1.00478 0.98898 0.88929 1.19390 0.94264 0.87857 0.90428 1.21486 0.94137 1.14204 1.26498 0.92020 1.25907 1.03842 0.94784 0.95132 1.70078 1.37824 1.19688 1.29908 0.85384 0.78973 0.78764 0.77510 1.19631 1.20703 1.19130 0.88093 0.91309 0.91002 0.91198 0.91650 0.87343 0.85130 0.93931 0.91708 0.96539 0.92802 0.90418 1.01478 0.97841 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.91 6.19 71.98 0.45 1.35 16 3 O -0.36 -8.20 10.22 -51.36 -0.52 -8.72 16 4 C 0.49 13.37 7.74 71.23 0.55 13.92 16 5 O -0.54 -18.08 16.01 21.96 0.35 -17.73 16 6 C -0.17 -3.92 6.02 -11.52 -0.07 -3.99 16 7 H 0.15 3.03 8.14 -2.38 -0.02 3.01 16 8 C -0.12 -2.58 9.88 30.60 0.30 -2.27 16 9 C -0.11 -3.30 4.31 -10.77 -0.05 -3.35 16 10 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 11 C 0.09 3.04 5.24 86.31 0.45 3.49 16 12 N -0.55 -24.34 4.75 -927.05 -4.41 -28.75 16 13 C 0.04 1.66 9.19 127.69 1.17 2.83 16 14 C 0.21 11.18 4.72 85.56 0.40 11.58 16 15 C -0.52 -30.31 8.46 25.60 0.22 -30.09 16 16 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 17 C 0.00 0.07 5.46 84.66 0.46 0.54 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 19 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.13 2.24 8.03 -2.39 -0.02 2.22 16 30 H 0.04 1.37 7.85 -2.38 -0.02 1.35 16 31 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 2.26 6.76 -2.38 -0.02 2.24 16 34 H 0.08 2.49 7.28 -2.39 -0.02 2.48 16 35 H -0.03 -1.87 8.12 -2.39 -0.02 -1.89 16 36 H 0.00 0.20 7.93 -2.39 -0.02 0.18 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -69.08 314.77 3.39 -65.69 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.03 Total: 5.89 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.63 Total: -6.85 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.12 Total: -85.13 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.17 Total: -26.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.08 3.39 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929808357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.730 kcal (2) G-P(sol) polarization free energy of solvation -69.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds