Wall clock time and date at job start Mon Mar 30 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47398 * 2 1 4 4 C 1.46495 * 119.99875 * 269.99976 * 3 2 1 5 5 C 1.50704 * 109.47027 * 269.99773 * 4 3 2 6 6 H 1.07995 * 119.99840 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00621 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99559 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47458 * 59.99800 * 9 7 5 11 11 H 1.48504 * 109.46899 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47212 * 299.99289 * 9 7 5 13 13 C 1.34780 * 120.00169 * 89.99206 * 3 2 1 14 14 O 1.21276 * 119.99766 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99687 * 0.02562 * 13 3 2 16 16 C 1.53009 * 109.46827 * 185.30752 * 15 13 3 17 17 C 1.52992 * 112.99873 * 65.47710 * 16 15 13 18 18 C 1.54032 * 113.92527 * 197.41052 * 16 15 13 19 19 O 1.44172 * 85.52106 * 136.81345 * 18 16 15 20 20 C 1.44179 * 93.33937 * 335.80669 * 19 18 16 21 21 H 1.08999 * 109.47446 * 300.00144 * 1 2 3 22 22 H 1.09002 * 109.46985 * 60.00411 * 1 2 3 23 23 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47446 * 239.99856 * 2 1 3 25 25 H 1.09002 * 109.46985 * 119.99589 * 2 1 3 26 26 H 1.09002 * 109.47553 * 29.99685 * 4 3 2 27 27 H 1.09004 * 109.47383 * 149.99642 * 4 3 2 28 28 H 0.96992 * 120.00420 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.47418 * 65.30860 * 15 13 3 30 30 H 1.09003 * 109.47073 * 305.30172 * 15 13 3 31 31 H 1.09000 * 109.47301 * 292.74430 * 17 16 15 32 32 H 1.09000 * 109.47833 * 52.74487 * 17 16 15 33 33 H 1.09002 * 109.47272 * 172.74747 * 17 16 15 34 34 H 1.09006 * 113.86391 * 250.96396 * 18 16 15 35 35 H 1.09008 * 113.86770 * 22.66514 * 18 16 15 36 36 H 1.09001 * 113.86203 * 270.04591 * 20 19 18 37 37 H 1.09000 * 113.98372 * 138.34731 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6176 9 14 5.9136 2.0961 -3.4169 10 1 6.1403 0.6394 -3.5952 11 1 6.1612 2.7962 -4.7029 12 1 6.8415 2.6185 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9921 1.3061 2.4723 16 6 2.1957 2.2830 3.6322 17 6 1.1688 3.4170 3.6459 18 6 2.3852 1.5989 4.9991 19 8 3.4388 2.5607 5.2075 20 6 3.6513 2.7598 3.7955 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5818 1.6876 -2.0284 27 1 2.0956 3.1410 -1.1384 28 1 3.6756 3.5168 -4.4435 29 1 2.6881 0.4733 2.5722 30 1 0.9695 0.9291 2.4900 31 1 1.3268 4.0608 2.7806 32 1 0.1635 2.9974 3.6076 33 1 1.2843 4.0008 4.5591 34 1 1.5378 1.7198 5.6741 35 1 2.7354 0.5688 4.9321 36 1 4.3880 2.0843 3.3608 37 1 3.8084 3.8009 3.5135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:38 Heat of formation + Delta-G solvation = -57.344418 kcal Electronic energy + Delta-G solvation = -18173.984714 eV Core-core repulsion = 15338.558153 eV Total energy + Delta-G solvation = -2835.426561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71436 -38.72974 -35.31911 -33.11984 -32.56536 -30.09524 -28.50786 -26.66362 -26.40577 -25.46878 -23.04108 -22.49027 -18.99154 -18.14023 -16.66847 -16.36867 -16.03231 -15.79757 -15.23472 -15.03093 -14.54484 -13.98046 -13.51391 -13.32889 -13.23028 -12.56221 -12.23963 -12.13674 -12.01498 -11.83215 -11.50283 -11.21318 -11.16198 -10.94553 -10.71750 -10.62464 -10.48814 -10.20451 -10.13320 -9.65086 -9.50565 -8.80548 -8.43959 -7.65617 -6.04987 -4.09881 3.30834 3.35489 3.37023 3.44974 3.83027 3.88179 4.37601 4.47183 4.85596 5.02469 5.20208 5.26778 5.29982 5.39627 5.43549 5.52257 5.63666 5.67959 5.76480 5.81610 5.98839 5.99878 6.07382 6.17075 6.21895 6.26071 6.33377 6.47299 6.52560 7.07270 7.44394 7.55354 7.91512 8.23212 8.43862 8.89681 9.10942 9.55416 11.03003 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.006879 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.995310 B = 4069.484904 C = 4648.699332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.538 6.538 15 C -0.137 4.137 16 C -0.107 4.107 17 C -0.129 4.129 18 C 0.040 3.960 19 O -0.388 6.388 20 C 0.056 3.944 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 -6.678 12.189 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.415 6.415 15 C -0.177 4.177 16 C -0.107 4.107 17 C -0.186 4.186 18 C -0.037 4.037 19 O -0.307 6.307 20 C -0.021 4.021 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.414 -5.844 12.211 14.579 hybrid contribution 0.865 -0.437 -0.681 1.184 sum -4.549 -6.281 11.529 13.895 Atomic orbital electron populations 1.22222 0.96865 1.01362 1.02290 1.21397 0.93456 0.84341 1.02575 1.48279 1.63736 1.13194 1.07852 1.19239 0.96137 0.93620 0.78229 1.21398 0.96963 1.31887 1.06279 0.92598 1.24930 0.97798 0.94930 0.96401 1.69917 1.35717 1.33414 1.14366 0.86578 0.84865 0.78235 0.77860 1.20283 1.21160 1.20180 1.20209 0.78522 0.86988 0.84934 1.90637 1.45725 1.18009 1.87164 1.21855 1.03459 0.98942 0.93465 1.23348 0.97611 0.96266 0.93503 1.21594 0.96509 0.97239 1.03254 1.24088 0.90828 0.93452 0.95380 1.89621 1.56244 1.59453 1.25387 1.23994 0.95261 1.03034 0.79765 0.93080 0.92068 0.92224 0.90055 0.91812 0.95193 0.93925 0.92669 0.89332 0.89328 0.90084 0.92748 0.92345 0.89463 0.90483 0.90461 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.19 37.16 0.38 -1.81 16 2 C 0.11 1.65 5.86 -4.04 -0.02 1.63 16 3 N -0.60 -12.25 2.46 -175.06 -0.43 -12.68 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.51 9.98 7.33 -10.99 -0.08 9.90 16 14 O -0.54 -12.64 13.26 5.56 0.07 -12.57 16 15 C -0.14 -1.93 3.64 -27.88 -0.10 -2.03 16 16 C -0.11 -1.48 0.78 -153.43 -0.12 -1.60 16 17 C -0.13 -1.78 8.81 37.15 0.33 -1.45 16 18 C 0.04 0.47 8.34 37.61 0.31 0.78 16 19 O -0.39 -5.92 12.37 -35.23 -0.44 -6.36 16 20 C 0.06 0.87 7.17 37.61 0.27 1.14 16 21 H 0.05 0.62 7.13 -51.93 -0.37 0.25 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 25 H 0.06 0.81 6.59 -51.93 -0.34 0.47 16 26 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.11 7.61 -51.93 -0.40 0.72 16 30 H 0.09 1.05 6.90 -51.93 -0.36 0.69 16 31 H 0.08 1.34 6.62 -51.93 -0.34 1.00 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.08 0.77 8.06 -51.92 -0.42 0.36 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.10 1.63 8.10 -51.93 -0.42 1.21 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -32.12 303.73 -5.93 -38.05 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.94 Total: -1.44 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 0.52 Total: -0.57 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.31 Total: -38.48 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.36 Total: -18.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.12 -5.93 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.292 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds