Wall clock time and date at job start Mon Mar 30 2020 03:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47398 * 2 1 4 4 C 1.46495 * 119.99875 * 269.99976 * 3 2 1 5 5 C 1.50704 * 109.47027 * 269.99773 * 4 3 2 6 6 H 1.07995 * 119.99840 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99758 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00621 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99559 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47458 * 59.99800 * 9 7 5 11 11 H 1.48504 * 109.46899 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47212 * 299.99289 * 9 7 5 13 13 C 1.34780 * 120.00169 * 89.99206 * 3 2 1 14 14 O 1.21276 * 119.99766 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99687 * 0.02562 * 13 3 2 16 16 C 1.53009 * 109.46827 * 185.30752 * 15 13 3 17 17 C 1.52992 * 112.99873 * 65.47710 * 16 15 13 18 18 C 1.54032 * 113.92527 * 197.41052 * 16 15 13 19 19 O 1.44172 * 85.52106 * 136.81345 * 18 16 15 20 20 C 1.44179 * 93.33937 * 335.80669 * 19 18 16 21 21 H 1.08999 * 109.47446 * 300.00144 * 1 2 3 22 22 H 1.09002 * 109.46985 * 60.00411 * 1 2 3 23 23 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47446 * 239.99856 * 2 1 3 25 25 H 1.09002 * 109.46985 * 119.99589 * 2 1 3 26 26 H 1.09002 * 109.47553 * 29.99685 * 4 3 2 27 27 H 1.09004 * 109.47383 * 149.99642 * 4 3 2 28 28 H 0.96992 * 120.00420 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.47418 * 65.30860 * 15 13 3 30 30 H 1.09003 * 109.47073 * 305.30172 * 15 13 3 31 31 H 1.09000 * 109.47301 * 292.74430 * 17 16 15 32 32 H 1.09000 * 109.47833 * 52.74487 * 17 16 15 33 33 H 1.09002 * 109.47272 * 172.74747 * 17 16 15 34 34 H 1.09006 * 113.86391 * 250.96396 * 18 16 15 35 35 H 1.09008 * 113.86770 * 22.66514 * 18 16 15 36 36 H 1.09001 * 113.86203 * 270.04591 * 20 19 18 37 37 H 1.09000 * 113.98372 * 138.34731 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1264 -3.6176 9 14 5.9136 2.0961 -3.4169 10 1 6.1403 0.6394 -3.5952 11 1 6.1612 2.7962 -4.7029 12 1 6.8415 2.6185 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9921 1.3061 2.4723 16 6 2.1957 2.2830 3.6322 17 6 1.1688 3.4170 3.6459 18 6 2.3852 1.5989 4.9991 19 8 3.4388 2.5607 5.2075 20 6 3.6513 2.7598 3.7955 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5818 1.6876 -2.0284 27 1 2.0956 3.1410 -1.1384 28 1 3.6756 3.5168 -4.4435 29 1 2.6881 0.4733 2.5722 30 1 0.9695 0.9291 2.4900 31 1 1.3268 4.0608 2.7806 32 1 0.1635 2.9974 3.6076 33 1 1.2843 4.0008 4.5591 34 1 1.5378 1.7198 5.6741 35 1 2.7354 0.5688 4.9321 36 1 4.3880 2.0843 3.3608 37 1 3.8084 3.8009 3.5135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:37 Heat of formation + Delta-G solvation = -79.197171 kcal Electronic energy + Delta-G solvation = -18174.932320 eV Core-core repulsion = 15338.558153 eV Total energy + Delta-G solvation = -2836.374167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87917 -40.22606 -36.90975 -34.96427 -34.01422 -31.56780 -29.95593 -28.27018 -27.45112 -26.74266 -24.77752 -23.94881 -20.32167 -19.43732 -18.61169 -17.97171 -17.37991 -16.93612 -16.61761 -16.44662 -16.22231 -15.50380 -14.75858 -14.64861 -14.51408 -14.20721 -13.63084 -13.46885 -13.32335 -13.19924 -13.05816 -12.81186 -12.62845 -12.49848 -12.33388 -12.12272 -11.85277 -11.71255 -11.64219 -11.32603 -10.64413 -10.60416 -10.36699 -9.37254 -8.22101 -6.37112 1.35497 1.39546 1.46781 1.93328 2.31507 2.46634 2.78637 3.07048 3.25924 3.77036 3.85069 4.07878 4.22212 4.24728 4.42913 4.44755 4.59551 4.64115 4.69527 4.73140 4.90391 4.92366 4.99083 5.01832 5.06299 5.09010 5.18441 5.24924 5.28545 5.39406 5.42838 5.59803 5.89936 6.08023 6.71530 6.88101 7.29734 7.57683 8.84448 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025106 B = 0.006879 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.995310 B = 4069.484904 C = 4648.699332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.496 3.504 14 O -0.587 6.587 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.052 3.948 19 O -0.407 6.407 20 C 0.047 3.953 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.017 0.983 27 H -0.005 1.005 28 H 0.267 0.733 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -9.396 13.890 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.285 3.715 14 O -0.468 6.468 15 C -0.161 4.161 16 C -0.110 4.110 17 C -0.183 4.183 18 C -0.024 4.024 19 O -0.327 6.327 20 C -0.029 4.029 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.035 0.965 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.691 -8.611 13.933 17.340 hybrid contribution 0.900 0.433 -1.189 1.553 sum -4.791 -8.178 12.744 15.883 Atomic orbital electron populations 1.22158 0.94671 1.03446 1.01651 1.21733 0.95246 0.81471 1.03846 1.48317 1.64135 1.15079 1.06304 1.18631 0.95002 0.91462 0.80698 1.21708 0.97993 1.31837 1.06478 0.92821 1.25855 1.02289 0.94538 0.96506 1.70044 1.37808 1.34286 1.14822 0.85507 0.79166 0.79032 0.77352 1.18425 1.20427 1.20351 1.21301 0.77130 0.86659 0.86408 1.90624 1.47707 1.20490 1.88006 1.21862 1.06135 0.98808 0.89338 1.23387 0.95988 0.96524 0.95075 1.21540 0.97935 0.97064 1.01736 1.24326 0.90567 0.93861 0.93622 1.89605 1.57504 1.60806 1.24762 1.23912 0.96944 1.01614 0.80476 0.91803 0.94672 0.88681 0.91444 0.87860 0.96493 0.98689 0.92465 0.86709 0.85869 0.93889 0.90356 0.91834 0.86915 0.87779 0.90652 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.19 71.98 0.73 -2.99 16 2 C 0.10 2.86 5.86 86.38 0.51 3.37 16 3 N -0.61 -24.86 2.46 -826.16 -2.03 -26.89 16 4 C 0.26 14.21 5.16 85.64 0.44 14.65 16 5 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.50 19.40 7.33 87.66 0.64 20.04 16 14 O -0.59 -28.85 13.26 -3.02 -0.04 -28.89 16 15 C -0.12 -3.03 3.64 29.85 0.11 -2.92 16 16 C -0.11 -2.79 0.78 -51.48 -0.04 -2.83 16 17 C -0.13 -3.33 8.81 71.98 0.63 -2.70 16 18 C 0.05 1.02 8.34 72.27 0.60 1.62 16 19 O -0.41 -11.69 12.37 -148.98 -1.84 -13.53 16 20 C 0.05 1.46 7.17 72.27 0.52 1.98 16 21 H 0.06 1.32 7.13 -2.39 -0.02 1.30 16 22 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 25 H 0.10 2.17 6.59 -2.39 -0.02 2.15 16 26 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 27 H -0.01 -0.31 7.42 -2.38 -0.02 -0.33 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.11 2.32 7.61 -2.39 -0.02 2.30 16 30 H 0.12 2.26 6.90 -2.39 -0.02 2.25 16 31 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.58 8.07 -2.39 -0.02 1.56 16 34 H 0.11 1.66 8.10 -2.38 -0.02 1.64 16 35 H 0.10 1.51 8.06 -2.38 -0.02 1.49 16 36 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 37 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 Total: -1.00 -74.38 303.73 4.28 -70.10 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.03 Total: 8.48 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.85 Total: 0.09 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.74 Total: -83.37 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.88 Total: -42.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.38 4.28 -70.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -74.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds