Wall clock time and date at job start Mon Mar 30 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.50706 * 109.46929 * 66.04676 * 3 2 1 5 5 H 1.07998 * 119.99628 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00067 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99964 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47108 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46996 * 120.00182 * 8 6 4 11 11 H 1.48497 * 109.47528 * 240.00000 * 8 6 4 12 12 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 13 13 C 1.50708 * 109.46760 * 293.95026 * 12 2 1 14 14 O 1.21283 * 120.00092 * 359.97438 * 13 12 2 15 15 N 1.34774 * 120.00066 * 179.97438 * 13 12 2 16 16 C 1.47086 * 120.87840 * 359.72824 * 15 13 12 17 17 C 1.52780 * 108.76381 * 231.11818 * 16 15 13 18 18 N 1.46900 * 109.42493 * 306.42509 * 17 16 15 19 19 C 1.46901 * 111.26870 * 62.96201 * 18 17 16 20 20 C 1.47071 * 120.88393 * 179.97438 * 15 13 12 21 21 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 22 22 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 24 24 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 25 25 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 26 26 H 0.96995 * 119.99723 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47196 * 53.94614 * 12 2 1 28 28 H 1.09000 * 109.47010 * 173.95423 * 12 2 1 29 29 H 1.08998 * 109.62758 * 350.88512 * 16 15 13 30 30 H 1.08996 * 109.63081 * 111.47209 * 16 15 13 31 31 H 1.09000 * 109.56978 * 186.37124 * 17 16 15 32 32 H 1.09005 * 109.35847 * 66.35124 * 17 16 15 33 33 H 1.00902 * 111.00214 * 187.11194 * 18 17 16 34 34 H 1.08997 * 109.49332 * 176.93583 * 19 18 17 35 35 H 1.08999 * 109.51582 * 56.87217 * 19 18 17 36 36 H 1.08996 * 109.63605 * 248.53157 * 20 15 13 37 37 H 1.09005 * 109.62693 * 8.91770 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3491 1.5290 7 7 2.7127 4.0016 0.6154 8 14 1.5825 4.1868 3.1381 9 1 0.8145 3.2445 3.9909 10 1 2.8240 4.5934 3.8444 11 1 0.7560 5.3884 2.8587 12 6 1.9955 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 8 1.0056 -2.5833 -0.0031 15 7 2.0181 -3.1179 -1.9033 16 6 2.7793 -2.6983 -3.0898 17 6 2.0884 -3.2482 -4.3367 18 7 1.9076 -4.6991 -4.1952 19 6 1.0263 -5.0184 -3.0641 20 6 1.6793 -4.5421 -1.7617 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.0797 1.3445 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 2.9879 4.9174 0.7777 27 1 1.5611 -0.3872 -2.0628 28 1 3.0798 -0.6610 -1.1756 29 1 2.8093 -1.6098 -3.1395 30 1 3.7936 -3.0932 -3.0328 31 1 2.7010 -3.0419 -5.2144 32 1 1.1157 -2.7699 -4.4514 33 1 1.5594 -5.1053 -5.0507 34 1 0.8685 -6.0960 -3.0188 35 1 0.0681 -4.5158 -3.1958 36 1 2.5860 -5.1174 -1.5748 37 1 0.9852 -4.6726 -0.9315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038031589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:33 Heat of formation + Delta-G solvation = -14.321580 kcal Electronic energy + Delta-G solvation = -17753.844170 eV Core-core repulsion = 14952.575971 eV Total energy + Delta-G solvation = -2801.268199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03227 -37.72319 -35.82355 -33.73929 -32.50217 -31.42705 -28.49676 -27.04569 -26.24319 -24.25408 -23.43336 -21.50179 -20.37609 -18.78899 -17.38189 -16.36547 -15.78428 -15.59655 -15.50149 -14.96800 -14.68354 -14.45545 -14.03373 -13.69345 -13.57533 -12.83457 -12.54265 -12.40781 -11.86662 -11.61342 -11.41425 -11.35741 -11.32675 -11.02251 -10.81701 -10.64167 -10.49818 -9.94369 -9.43085 -9.04932 -9.03106 -8.45070 -8.41404 -7.21318 -6.01634 -4.01961 2.95181 3.01159 3.33597 3.40770 3.47536 3.88569 4.44632 4.60720 4.75011 4.91832 4.99215 5.05703 5.10038 5.19539 5.34690 5.35352 5.46658 5.62998 5.71652 5.75951 5.80054 5.88959 6.31849 6.40332 6.53251 6.63234 6.90757 6.96678 7.23850 7.31041 7.50633 7.82747 8.06365 8.20117 8.47953 8.57905 9.06508 9.62239 11.09581 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052897 B = 0.004718 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.203665 B = 5933.282618 C = 6246.322730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.524 5.524 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.066 0.934 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.040 3.960 13 C 0.518 3.482 14 O -0.519 6.519 15 N -0.625 5.625 16 C 0.111 3.889 17 C 0.042 3.958 18 N -0.689 5.689 19 C 0.044 3.956 20 C 0.116 3.884 21 H 0.005 0.995 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.030 0.970 25 H -0.008 1.008 26 H 0.260 0.740 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.344 0.656 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -15.376 -11.902 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.249 5.249 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.084 0.916 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.092 4.092 13 C 0.306 3.694 14 O -0.393 6.393 15 N -0.362 5.362 16 C -0.013 4.013 17 C -0.089 4.089 18 N -0.321 5.321 19 C -0.086 4.086 20 C -0.007 4.007 21 H 0.023 0.977 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.010 0.990 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.690 -15.677 -10.568 18.919 hybrid contribution -1.185 1.233 -0.513 1.785 sum -1.875 -14.444 -11.081 18.301 Atomic orbital electron populations 1.22330 0.88078 1.00619 1.00275 1.61856 1.07814 1.17302 1.37880 1.19803 0.95357 0.81073 0.96980 1.21202 1.34591 0.96845 1.01596 0.91627 1.24981 0.95299 0.97291 0.97087 1.69968 1.38621 1.11430 1.34071 0.86418 0.78165 0.79238 0.83501 1.19577 1.20996 1.21132 1.21963 1.01859 0.90374 0.95005 1.21032 0.78425 0.88241 0.81653 1.90635 1.38820 1.80300 1.29514 1.48239 1.56952 1.07805 1.23165 1.21724 0.95495 1.00347 0.83713 1.22255 0.99940 0.88125 0.98533 1.60276 1.52428 1.11687 1.07702 1.22331 0.93923 1.00895 0.91494 1.21595 1.00750 0.81170 0.97189 0.97696 0.91956 0.90811 0.95153 0.99007 0.93011 0.93310 0.88517 0.89082 0.90654 0.89432 0.94603 0.83836 0.89704 0.94692 0.91182 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.00 60.06 0.54 1.31 16 2 N -0.52 -12.16 4.49 -245.82 -1.10 -13.27 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 4 C -0.50 -14.57 8.51 -34.44 -0.29 -14.86 16 5 H 0.07 1.92 7.10 -52.49 -0.37 1.54 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.04 0.73 3.82 -4.97 -0.02 0.71 16 13 C 0.52 9.13 7.40 -10.98 -0.08 9.05 16 14 O -0.52 -10.95 13.79 5.55 0.08 -10.88 16 15 N -0.62 -8.51 3.01 -172.72 -0.52 -9.03 16 16 C 0.11 1.16 6.47 -3.84 -0.02 1.14 16 17 C 0.04 0.36 6.68 -3.94 -0.03 0.33 16 18 N -0.69 -5.83 6.82 -113.74 -0.78 -6.61 16 19 C 0.04 0.40 6.70 -3.68 -0.02 0.38 16 20 C 0.12 1.37 6.61 -3.59 -0.02 1.35 16 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 22 H 0.06 1.31 5.83 -51.93 -0.30 1.01 16 23 H 0.07 1.70 6.86 -51.93 -0.36 1.35 16 24 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 25 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.05 0.82 7.63 -51.93 -0.40 0.42 16 28 H 0.10 1.67 7.80 -51.93 -0.41 1.26 16 29 H 0.09 0.92 6.02 -51.93 -0.31 0.61 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.34 2.20 8.90 -39.29 -0.35 1.85 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.24 7.06 -51.93 -0.37 0.87 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -33.36 296.16 -8.01 -41.36 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.79 Total: -2.92 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.07 Total: 5.97 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -1.66 Total: -55.05 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.36 -8.01 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038031589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.042 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds