Wall clock time and date at job start Mon Mar 30 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00349 * 2 1 4 4 H 1.48495 * 109.47169 * 240.00097 * 3 2 1 5 5 H 1.48500 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47321 * 119.99624 * 3 2 1 7 7 C 1.37875 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00500 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47496 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00242 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00321 * 180.02562 * 11 10 9 14 14 N 1.46904 * 109.47459 * 180.02562 * 13 11 10 15 15 C 1.46846 * 110.99942 * 293.95589 * 14 13 11 16 16 C 1.53035 * 109.52744 * 174.16069 * 15 14 13 17 17 C 1.53123 * 109.27774 * 59.17321 * 16 15 14 18 18 C 1.53114 * 109.16198 * 302.35270 * 17 16 15 19 19 H 1.09007 * 109.53693 * 297.69232 * 18 17 16 20 20 N 1.46897 * 109.50101 * 177.59624 * 18 17 16 21 21 C 1.46844 * 111.00328 * 169.74435 * 14 13 11 22 22 H 0.96999 * 119.99744 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46635 * 59.99719 * 9 7 2 24 24 H 1.08996 * 109.47100 * 300.00245 * 9 7 2 25 25 H 0.97004 * 119.99812 * 0.02562 * 10 9 7 26 26 H 1.09003 * 109.47112 * 60.00469 * 13 11 10 27 27 H 1.08996 * 109.47363 * 300.00542 * 13 11 10 28 28 H 1.09008 * 109.46456 * 294.17536 * 15 14 13 29 29 H 1.09003 * 109.46474 * 54.14041 * 15 14 13 30 30 H 1.08995 * 109.50534 * 179.12351 * 16 15 14 31 31 H 1.09011 * 109.49854 * 299.24031 * 16 15 14 32 32 H 1.09000 * 109.52219 * 182.44440 * 17 16 15 33 33 H 1.09001 * 109.57074 * 62.29217 * 17 16 15 34 34 H 1.00900 * 111.00663 * 60.19810 * 20 18 17 35 35 H 1.00908 * 110.99757 * 184.14802 * 20 18 17 36 36 H 1.09000 * 109.46271 * 305.85568 * 21 14 13 37 37 H 1.08998 * 109.46026 * 65.82128 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0288 0.0016 14 7 1.9984 -7.3010 0.0015 15 6 1.2526 -7.4783 1.2541 16 6 0.3880 -8.7375 1.1608 17 6 1.2870 -9.9502 0.9042 18 6 2.0882 -9.7190 -0.3800 19 1 1.4051 -9.6284 -1.2245 20 7 2.9956 -10.8526 -0.6026 21 6 2.9035 -8.4314 -0.2420 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 3.1566 -3.4355 0.0009 26 1 3.3594 -5.9708 0.8917 27 1 3.3597 -5.9715 -0.8882 28 1 1.9535 -7.5795 2.0828 29 1 0.6142 -6.6110 1.4225 30 1 -0.1535 -8.8773 2.0964 31 1 -0.3224 -8.6312 0.3409 32 1 0.6716 -10.8430 0.7939 33 1 1.9717 -10.0810 1.7422 34 1 2.4805 -11.7151 -0.6970 35 1 3.5834 -10.6927 -1.4070 36 1 3.4642 -8.2564 -1.1602 37 1 3.5966 -8.5281 0.5937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041028811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:22 Heat of formation + Delta-G solvation = -41.595759 kcal Electronic energy + Delta-G solvation = -17393.529620 eV Core-core repulsion = 14591.078724 eV Total energy + Delta-G solvation = -2802.450897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59652 -38.12044 -34.73269 -34.01834 -32.51657 -32.21124 -28.73239 -27.98880 -26.37073 -23.37869 -22.55656 -21.89369 -19.66625 -19.59291 -17.07890 -16.19225 -15.81344 -15.47150 -15.33057 -15.12248 -14.95374 -14.39191 -14.01698 -13.73305 -13.18391 -12.95568 -12.57160 -12.39483 -12.01869 -11.87313 -11.73828 -11.37865 -10.99601 -10.87873 -10.83138 -10.55746 -10.40308 -10.28929 -9.40058 -8.98558 -8.90796 -8.71661 -8.17071 -7.83223 -6.15781 -4.22785 3.25631 3.30360 3.31802 3.41194 3.60194 4.23035 4.39351 4.49389 4.67510 4.83683 5.09789 5.20111 5.23268 5.34301 5.41566 5.48518 5.52108 5.60849 5.70301 5.76489 5.86893 5.91285 5.99964 6.28268 6.37703 6.85985 7.03171 7.16639 7.25033 7.34610 7.47354 7.53718 7.68900 7.98446 8.65664 8.80327 9.14984 9.44046 10.94397 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062141 B = 0.004063 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.482806 B = 6889.682181 C = 7172.877776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.538 6.538 13 C 0.037 3.963 14 N -0.519 5.519 15 C 0.049 3.951 16 C -0.113 4.113 17 C -0.113 4.113 18 C 0.093 3.907 19 H 0.046 0.954 20 N -0.849 5.849 21 C 0.063 3.937 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.389 0.611 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.025 0.975 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.340 0.660 36 H 0.070 0.930 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -17.835 0.301 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.283 3.717 12 O -0.416 6.416 13 C -0.094 4.094 14 N -0.244 5.244 15 C -0.078 4.078 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.018 4.018 19 H 0.064 0.936 20 N -0.379 5.379 21 C -0.065 4.065 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.222 0.778 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.504 -17.639 0.638 18.489 hybrid contribution 1.066 0.921 -0.323 1.445 sum 6.570 -16.718 0.315 17.965 Atomic orbital electron populations 1.69967 1.06107 1.27397 1.48834 1.24953 0.94915 0.99435 0.94712 0.86473 0.79414 0.82331 0.78678 1.20067 1.21073 1.20080 1.21200 0.93225 0.90515 1.53295 0.91976 1.19073 0.88281 0.81889 0.97681 1.46453 1.11057 1.06101 1.72829 1.20289 0.89570 0.84064 0.77818 1.90626 1.16657 1.84517 1.49843 1.21981 0.95420 0.89505 1.02528 1.61466 1.26392 1.00202 1.36339 1.22295 0.96858 1.00058 0.88602 1.21527 0.97991 0.93418 1.02196 1.21616 0.98062 0.98046 0.97355 1.21295 0.93025 0.89886 0.97606 0.93623 1.58677 1.26454 1.04814 1.47978 1.22016 0.93755 0.89871 1.00893 0.92397 0.95553 0.95626 0.77842 0.92448 0.88435 0.95633 0.88188 0.91361 0.90899 0.92278 0.91594 0.84563 0.84721 0.91120 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.69 5.43 -5.20 -0.03 6.67 16 10 N -0.72 -15.05 5.55 -61.48 -0.34 -15.39 16 11 C 0.50 9.98 7.50 -10.99 -0.08 9.90 16 12 O -0.54 -12.91 14.35 5.55 0.08 -12.83 16 13 C 0.04 0.55 5.45 -4.98 -0.03 0.52 16 14 N -0.52 -7.62 4.39 -236.12 -1.04 -8.66 16 15 C 0.05 0.72 5.11 -3.84 -0.02 0.70 16 16 C -0.11 -1.39 6.09 -26.65 -0.16 -1.56 16 17 C -0.11 -1.19 5.58 -26.61 -0.15 -1.34 16 18 C 0.09 0.99 3.41 -67.64 -0.23 0.76 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 N -0.85 -7.20 9.25 -4.60 -0.04 -7.25 16 21 C 0.06 0.74 5.00 -3.84 -0.02 0.72 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 26 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.10 1.24 7.98 -51.93 -0.41 0.82 16 28 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.10 1.79 5.80 -51.93 -0.30 1.49 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.34 2.38 9.04 -39.29 -0.36 2.02 16 35 H 0.34 2.44 8.99 -39.29 -0.35 2.09 16 36 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -31.84 301.45 -8.16 -40.00 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.94 Total: 6.27 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.13 Total: 2.92 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.68 Total: -56.76 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.84 -8.16 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041028811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.597 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds