Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00349 * 2 1 4 4 H 1.48495 * 109.47169 * 240.00097 * 3 2 1 5 5 H 1.48500 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47321 * 119.99624 * 3 2 1 7 7 C 1.37875 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00500 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47496 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00242 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00321 * 180.02562 * 11 10 9 14 14 N 1.46904 * 109.47459 * 180.02562 * 13 11 10 15 15 C 1.46846 * 110.99942 * 293.95589 * 14 13 11 16 16 C 1.53035 * 109.52744 * 174.16069 * 15 14 13 17 17 C 1.53123 * 109.27774 * 59.17321 * 16 15 14 18 18 C 1.53114 * 109.16198 * 302.35270 * 17 16 15 19 19 H 1.09007 * 109.53693 * 297.69232 * 18 17 16 20 20 N 1.46897 * 109.50101 * 177.59624 * 18 17 16 21 21 C 1.46844 * 111.00328 * 169.74435 * 14 13 11 22 22 H 0.96999 * 119.99744 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46635 * 59.99719 * 9 7 2 24 24 H 1.08996 * 109.47100 * 300.00245 * 9 7 2 25 25 H 0.97004 * 119.99812 * 0.02562 * 10 9 7 26 26 H 1.09003 * 109.47112 * 60.00469 * 13 11 10 27 27 H 1.08996 * 109.47363 * 300.00542 * 13 11 10 28 28 H 1.09008 * 109.46456 * 294.17536 * 15 14 13 29 29 H 1.09003 * 109.46474 * 54.14041 * 15 14 13 30 30 H 1.08995 * 109.50534 * 179.12351 * 16 15 14 31 31 H 1.09011 * 109.49854 * 299.24031 * 16 15 14 32 32 H 1.09000 * 109.52219 * 182.44440 * 17 16 15 33 33 H 1.09001 * 109.57074 * 62.29217 * 17 16 15 34 34 H 1.00900 * 111.00663 * 60.19810 * 20 18 17 35 35 H 1.00908 * 110.99757 * 184.14802 * 20 18 17 36 36 H 1.09000 * 109.46271 * 305.85568 * 21 14 13 37 37 H 1.08998 * 109.46026 * 65.82128 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0288 0.0016 14 7 1.9984 -7.3010 0.0015 15 6 1.2526 -7.4783 1.2541 16 6 0.3880 -8.7375 1.1608 17 6 1.2870 -9.9502 0.9042 18 6 2.0882 -9.7190 -0.3800 19 1 1.4051 -9.6284 -1.2245 20 7 2.9956 -10.8526 -0.6026 21 6 2.9035 -8.4314 -0.2420 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 3.1566 -3.4355 0.0009 26 1 3.3594 -5.9708 0.8917 27 1 3.3597 -5.9715 -0.8882 28 1 1.9535 -7.5795 2.0828 29 1 0.6142 -6.6110 1.4225 30 1 -0.1535 -8.8773 2.0964 31 1 -0.3224 -8.6312 0.3409 32 1 0.6716 -10.8430 0.7939 33 1 1.9717 -10.0810 1.7422 34 1 2.4805 -11.7151 -0.6970 35 1 3.5834 -10.6927 -1.4070 36 1 3.4642 -8.2564 -1.1602 37 1 3.5966 -8.5281 0.5937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041028811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -68.390226 kcal Electronic energy + Delta-G solvation = -17394.691516 eV Core-core repulsion = 14591.078724 eV Total energy + Delta-G solvation = -2803.612792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93755 -39.46517 -36.19736 -35.49500 -34.34976 -33.37707 -30.17700 -29.17379 -27.93217 -24.92973 -23.78968 -23.23010 -21.30910 -20.60512 -18.89985 -17.57762 -17.31274 -16.64556 -16.61347 -16.40551 -16.12678 -15.92898 -15.40097 -15.11850 -14.41880 -14.16349 -14.06477 -13.96487 -13.65894 -13.23707 -12.92120 -12.76183 -12.66024 -12.59257 -12.23674 -11.79211 -11.69702 -11.50516 -11.31185 -10.78523 -10.60125 -9.79744 -9.62623 -9.27359 -8.28771 -6.45643 1.43210 1.47445 1.55601 1.80403 2.25609 2.44692 3.00180 3.05943 3.62610 3.78403 3.90627 4.02931 4.12984 4.30808 4.31454 4.37825 4.46378 4.60116 4.74256 4.80619 4.94002 4.98351 5.06843 5.12089 5.21262 5.25026 5.40163 5.49785 5.71183 5.85392 5.96696 6.06214 6.29100 6.63138 6.65566 6.96099 7.24090 7.54331 8.83268 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062141 B = 0.004063 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.482806 B = 6889.682181 C = 7172.877776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.584 6.584 13 C 0.050 3.950 14 N -0.539 5.539 15 C 0.050 3.950 16 C -0.110 4.110 17 C -0.106 4.106 18 C 0.097 3.903 19 H 0.033 0.967 20 N -0.846 5.846 21 C 0.066 3.934 22 H 0.269 0.731 23 H -0.015 1.015 24 H -0.014 1.014 25 H 0.408 0.592 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.352 0.648 35 H 0.350 0.650 36 H 0.085 0.915 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 -18.624 0.227 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.464 6.464 13 C -0.081 4.081 14 N -0.265 5.265 15 C -0.077 4.077 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.015 4.015 19 H 0.051 0.949 20 N -0.378 5.378 21 C -0.062 4.062 22 H 0.077 0.923 23 H 0.003 0.997 24 H 0.004 0.996 25 H 0.244 0.756 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.357 -18.475 0.558 20.285 hybrid contribution 0.143 1.087 -0.302 1.137 sum 8.500 -17.388 0.256 19.356 Atomic orbital electron populations 1.70138 1.08315 1.28619 1.49956 1.26084 0.95774 1.03958 0.93844 0.85198 0.77896 0.76543 0.79525 1.18612 1.21146 1.18617 1.21607 0.94336 0.90607 1.52945 0.89760 1.18494 0.88681 0.84346 0.93914 1.46183 1.11151 1.05483 1.73250 1.21333 0.90002 0.84746 0.75840 1.90614 1.19225 1.85179 1.51402 1.21915 0.93842 0.87192 1.05107 1.61418 1.27585 1.01058 1.36400 1.22190 0.96869 0.99406 0.89265 1.21493 0.97786 0.93427 1.02112 1.21551 0.97888 0.97481 0.97458 1.21179 0.92998 0.90247 0.97083 0.94892 1.58632 1.26062 1.04486 1.48609 1.22068 0.93397 0.89054 1.01678 0.92263 0.99671 0.99629 0.75650 0.89842 0.85435 0.94528 0.92233 0.90301 0.92681 0.90745 0.91375 0.83420 0.83699 0.89703 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.56 -30.49 9.28 25.60 0.24 -30.25 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.93 5.43 85.63 0.46 15.39 16 10 N -0.71 -30.16 5.55 -466.80 -2.59 -32.75 16 11 C 0.49 20.02 7.50 87.66 0.66 20.67 16 12 O -0.58 -29.36 14.35 -3.05 -0.04 -29.40 16 13 C 0.05 1.39 5.45 85.55 0.47 1.86 16 14 N -0.54 -15.17 4.39 -900.94 -3.96 -19.13 16 15 C 0.05 1.47 5.11 86.33 0.44 1.91 16 16 C -0.11 -2.67 6.09 30.65 0.19 -2.48 16 17 C -0.11 -2.03 5.58 30.67 0.17 -1.86 16 18 C 0.10 1.84 3.41 44.96 0.15 1.99 16 19 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 20 N -0.85 -11.94 9.25 -168.47 -1.56 -13.50 16 21 C 0.07 1.38 5.00 86.32 0.43 1.81 16 22 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 23 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 24 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.41 14.11 8.32 -92.71 -0.77 13.34 16 26 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 27 H 0.13 2.80 7.98 -2.39 -0.02 2.78 16 28 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 2.23 5.80 -2.39 -0.01 2.22 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.35 3.91 9.04 -89.69 -0.81 3.10 16 35 H 0.35 3.98 8.99 -89.69 -0.81 3.17 16 36 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.99 301.45 -3.47 -75.46 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -1.31 Total: 21.67 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 3.67 Total: 9.67 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -7.82 Total: -121.81 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.04 Total: -29.40 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.99 -3.47 -75.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041028811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.070 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds