Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.50403 * 2 1 4 4 C 1.53050 * 109.48810 * 120.05241 * 2 1 3 5 5 N 1.46964 * 109.36322 * 178.37180 * 4 2 1 6 6 C 1.46951 * 110.87818 * 300.68246 * 5 4 2 7 7 C 1.53050 * 109.36871 * 59.32079 * 6 5 4 8 8 N 1.46950 * 109.36295 * 301.59821 * 7 6 5 9 9 C 1.46907 * 111.00166 * 183.18770 * 8 7 6 10 10 C 1.50701 * 109.46877 * 300.57325 * 9 8 7 11 11 O 1.21289 * 119.99968 * 354.35912 * 10 9 8 12 12 N 1.34770 * 120.00159 * 174.36458 * 10 9 8 13 13 C 1.46494 * 120.00207 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47179 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99956 * 179.72363 * 14 13 12 17 17 N 1.31507 * 120.00059 * 0.27409 * 16 14 13 18 18 Si 1.86801 * 119.99625 * 180.27259 * 16 14 13 19 19 H 1.48495 * 109.47532 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46687 * 120.00308 * 18 16 14 21 21 H 1.48497 * 109.47041 * 239.99900 * 18 16 14 22 22 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47953 * 300.05333 * 1 2 3 24 24 H 1.09007 * 109.47285 * 60.05550 * 1 2 3 25 25 H 1.08995 * 109.48995 * 298.33770 * 4 2 1 26 26 H 1.09000 * 109.48546 * 58.38631 * 4 2 1 27 27 H 1.00894 * 110.99479 * 64.55032 * 5 4 2 28 28 H 1.09000 * 109.48567 * 179.29001 * 6 5 4 29 29 H 1.09000 * 109.48779 * 299.32839 * 6 5 4 30 30 H 1.09004 * 109.48781 * 181.63012 * 7 6 5 31 31 H 1.08992 * 109.48602 * 61.56545 * 7 6 5 32 32 H 1.08997 * 109.47481 * 180.57093 * 9 8 7 33 33 H 1.08996 * 109.46995 * 60.56863 * 9 8 7 34 34 H 0.97000 * 120.00041 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47536 * 59.99655 * 13 12 10 36 36 H 1.08999 * 109.47205 * 299.99721 * 13 12 10 37 37 H 0.97005 * 120.00253 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5097 -0.7551 1.2265 6 6 3.9999 -1.4489 0.0274 7 6 3.4893 -0.7263 -1.2214 8 7 2.0204 -0.6937 -1.1991 9 6 1.4888 -0.0738 -2.4203 10 6 2.0131 1.3341 -2.5380 11 8 2.6724 1.8128 -1.6395 12 7 1.7494 2.0613 -3.6416 13 6 2.2586 3.4302 -3.7558 14 6 1.8276 4.0181 -5.0748 15 1 1.2340 3.4307 -5.7597 16 6 2.1865 5.3078 -5.4049 17 7 2.9096 6.0229 -4.5712 18 14 1.6458 6.0391 -7.0366 19 1 0.8471 5.0375 -7.7876 20 1 0.8173 7.2462 -6.7876 21 1 2.8424 6.4153 -7.8313 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3635 0.5146 0.8895 24 1 -0.3634 0.5130 -0.8905 25 1 1.7021 -0.1929 2.1393 26 1 1.6541 -1.7416 1.2628 27 1 3.8929 0.1762 1.2876 28 1 5.0899 -1.4488 0.0275 29 1 3.6363 -2.4765 0.0276 30 1 3.8279 -1.2560 -2.1119 31 1 3.8755 0.2928 -1.2353 32 1 0.4001 -0.0534 -2.3732 33 1 1.8041 -0.6527 -3.2884 34 1 1.2225 1.6784 -4.3603 35 1 3.3472 3.4186 -3.7020 36 1 1.8610 4.0349 -2.9408 37 1 3.1625 6.9302 -4.8036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054374189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -30.820173 kcal Electronic energy + Delta-G solvation = -17994.946914 eV Core-core repulsion = 15192.963282 eV Total energy + Delta-G solvation = -2801.983632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16969 -37.94418 -34.48931 -33.94133 -32.42829 -32.29933 -28.72598 -27.26963 -26.29404 -23.85239 -22.43787 -21.92940 -20.25390 -19.66611 -17.18282 -16.17486 -15.87747 -15.65619 -15.15732 -15.06449 -14.59369 -14.29064 -14.06124 -13.80589 -12.89520 -12.73669 -12.27980 -12.05792 -11.97906 -11.85808 -11.60641 -11.56529 -11.18709 -11.00065 -10.94669 -10.76852 -10.48089 -10.38267 -9.83287 -9.44381 -8.79651 -8.39686 -7.96592 -7.80867 -6.22733 -4.30108 3.19111 3.20734 3.26542 3.29530 3.91992 4.05711 4.32780 4.39070 4.98645 5.11558 5.13789 5.19319 5.27251 5.47593 5.51133 5.54194 5.58321 5.64403 5.70131 5.86754 5.89699 5.93850 6.13068 6.27213 6.45041 6.97529 6.99308 7.17800 7.22648 7.35232 7.41232 7.42978 7.59487 7.90097 8.52728 8.69883 8.99289 9.36913 10.87451 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.004894 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.890417 B = 5719.407311 C = 5843.580127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.022 3.978 3 H 0.081 0.919 4 C 0.069 3.931 5 N -0.688 5.688 6 C 0.064 3.936 7 C -0.003 4.003 8 N -0.506 5.506 9 C 0.026 3.974 10 C 0.467 3.533 11 O -0.557 6.557 12 N -0.709 5.709 13 C 0.249 3.751 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.342 0.658 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.391 0.609 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -13.639 6.389 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 H 0.099 0.901 4 C -0.062 4.062 5 N -0.316 5.316 6 C -0.066 4.066 7 C -0.133 4.133 8 N -0.230 5.230 9 C -0.106 4.106 10 C 0.251 3.749 11 O -0.438 6.438 12 N -0.357 5.357 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.223 0.777 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.538 -14.156 7.493 16.217 hybrid contribution -0.438 1.920 -2.168 2.929 sum -2.976 -12.236 5.325 13.672 Atomic orbital electron populations 1.21818 0.94628 1.01857 1.01764 1.22685 0.95779 0.99204 0.91128 0.90103 1.22092 0.87570 1.00795 0.95709 1.60818 1.07761 1.23727 1.39273 1.22031 0.99263 0.98290 0.87061 1.23095 0.88135 1.02292 0.99747 1.62604 1.08692 1.50666 1.01000 1.22377 1.01825 0.91492 0.94906 1.21787 0.81342 0.88699 0.83028 1.90536 1.41003 1.72849 1.39422 1.46627 1.53118 1.17373 1.18587 1.19093 0.94943 0.76035 0.97135 1.21265 1.35197 0.99188 1.02603 0.91839 1.24962 0.94723 0.96739 0.97581 1.69980 1.36254 1.10198 1.35878 0.86354 0.78479 0.79133 0.82921 1.19593 1.20747 1.20739 0.92164 0.92270 0.92706 0.90716 0.90710 0.84089 0.90633 0.90707 0.91091 0.91010 0.87822 0.88472 0.77655 0.95691 0.95675 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.87 37.16 0.33 -1.40 16 2 C 0.02 0.30 2.20 -67.66 -0.15 0.15 16 3 H 0.08 1.43 5.61 -51.93 -0.29 1.14 16 4 C 0.07 0.85 6.00 -3.76 -0.02 0.82 16 5 N -0.69 -8.81 6.91 -113.64 -0.79 -9.59 16 6 C 0.06 0.78 6.72 -3.77 -0.03 0.76 16 7 C 0.00 -0.05 5.19 -3.77 -0.02 -0.07 16 8 N -0.51 -7.13 4.73 -227.93 -1.08 -8.21 16 9 C 0.03 0.37 5.53 -4.97 -0.03 0.34 16 10 C 0.47 8.89 7.21 -10.99 -0.08 8.81 16 11 O -0.56 -12.44 11.60 5.55 0.06 -12.37 16 12 N -0.71 -14.54 5.55 -61.48 -0.34 -14.88 16 13 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 14 C -0.54 -14.66 9.28 -34.44 -0.32 -14.97 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.70 6.26 -51.93 -0.33 0.38 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.34 4.53 8.89 -39.29 -0.35 4.18 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.27 5.59 -51.93 -0.29 0.98 16 32 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -30.58 292.83 -8.12 -38.70 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.67 Total: 8.92 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.44 Total: 2.60 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -1.47 Total: -57.94 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.06 Total: -12.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.58 -8.12 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054374189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.882 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds