Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.50403 * 2 1 4 4 C 1.53050 * 109.48810 * 120.05241 * 2 1 3 5 5 N 1.46964 * 109.36322 * 178.37180 * 4 2 1 6 6 C 1.46951 * 110.87818 * 300.68246 * 5 4 2 7 7 C 1.53050 * 109.36871 * 59.32079 * 6 5 4 8 8 N 1.46950 * 109.36295 * 301.59821 * 7 6 5 9 9 C 1.46907 * 111.00166 * 183.18770 * 8 7 6 10 10 C 1.50701 * 109.46877 * 300.57325 * 9 8 7 11 11 O 1.21289 * 119.99968 * 354.35912 * 10 9 8 12 12 N 1.34770 * 120.00159 * 174.36458 * 10 9 8 13 13 C 1.46494 * 120.00207 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47179 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00410 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99956 * 179.72363 * 14 13 12 17 17 N 1.31507 * 120.00059 * 0.27409 * 16 14 13 18 18 Si 1.86801 * 119.99625 * 180.27259 * 16 14 13 19 19 H 1.48495 * 109.47532 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46687 * 120.00308 * 18 16 14 21 21 H 1.48497 * 109.47041 * 239.99900 * 18 16 14 22 22 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47953 * 300.05333 * 1 2 3 24 24 H 1.09007 * 109.47285 * 60.05550 * 1 2 3 25 25 H 1.08995 * 109.48995 * 298.33770 * 4 2 1 26 26 H 1.09000 * 109.48546 * 58.38631 * 4 2 1 27 27 H 1.00894 * 110.99479 * 64.55032 * 5 4 2 28 28 H 1.09000 * 109.48567 * 179.29001 * 6 5 4 29 29 H 1.09000 * 109.48779 * 299.32839 * 6 5 4 30 30 H 1.09004 * 109.48781 * 181.63012 * 7 6 5 31 31 H 1.08992 * 109.48602 * 61.56545 * 7 6 5 32 32 H 1.08997 * 109.47481 * 180.57093 * 9 8 7 33 33 H 1.08996 * 109.46995 * 60.56863 * 9 8 7 34 34 H 0.97000 * 120.00041 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47536 * 59.99655 * 13 12 10 36 36 H 1.08999 * 109.47205 * 299.99721 * 13 12 10 37 37 H 0.97005 * 120.00253 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 1.2489 5 7 3.5097 -0.7551 1.2265 6 6 3.9999 -1.4489 0.0274 7 6 3.4893 -0.7263 -1.2214 8 7 2.0204 -0.6937 -1.1991 9 6 1.4888 -0.0738 -2.4203 10 6 2.0131 1.3341 -2.5380 11 8 2.6724 1.8128 -1.6395 12 7 1.7494 2.0613 -3.6416 13 6 2.2586 3.4302 -3.7558 14 6 1.8276 4.0181 -5.0748 15 1 1.2340 3.4307 -5.7597 16 6 2.1865 5.3078 -5.4049 17 7 2.9096 6.0229 -4.5712 18 14 1.6458 6.0391 -7.0366 19 1 0.8471 5.0375 -7.7876 20 1 0.8173 7.2462 -6.7876 21 1 2.8424 6.4153 -7.8313 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3635 0.5146 0.8895 24 1 -0.3634 0.5130 -0.8905 25 1 1.7021 -0.1929 2.1393 26 1 1.6541 -1.7416 1.2628 27 1 3.8929 0.1762 1.2876 28 1 5.0899 -1.4488 0.0275 29 1 3.6363 -2.4765 0.0276 30 1 3.8279 -1.2560 -2.1119 31 1 3.8755 0.2928 -1.2353 32 1 0.4001 -0.0534 -2.3732 33 1 1.8041 -0.6527 -3.2884 34 1 1.2225 1.6784 -4.3603 35 1 3.3472 3.4186 -3.7020 36 1 1.8610 4.0349 -2.9408 37 1 3.1625 6.9302 -4.8036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054374189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -56.860080 kcal Electronic energy + Delta-G solvation = -17996.076089 eV Core-core repulsion = 15192.963282 eV Total energy + Delta-G solvation = -2803.112807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51244 -39.32517 -36.24235 -35.21167 -34.40686 -33.38438 -30.28923 -28.69896 -27.60051 -25.27147 -24.11204 -23.04483 -21.64950 -21.10232 -18.94084 -17.61727 -17.43564 -16.94457 -16.74158 -16.37375 -15.94623 -15.82220 -15.39710 -15.13030 -14.40913 -14.16253 -14.04392 -13.69230 -13.19207 -12.96151 -12.84972 -12.79913 -12.71675 -12.65657 -12.27520 -12.12992 -11.86866 -11.62785 -11.50103 -11.38529 -10.84749 -9.84719 -9.48957 -9.10845 -8.33678 -6.50894 1.40534 1.41369 1.55078 1.67008 2.29359 2.58169 2.78952 3.01329 3.36651 3.91441 3.96763 4.05572 4.14057 4.32119 4.44403 4.47729 4.51256 4.57060 4.69139 4.83211 4.88415 4.93109 5.04065 5.13583 5.14875 5.18063 5.34999 5.46785 5.65072 5.79907 5.86335 5.92642 6.07353 6.33326 6.60845 6.85062 7.19123 7.43903 8.78503 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.004894 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.890417 B = 5719.407311 C = 5843.580127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.021 3.979 3 H 0.039 0.961 4 C 0.072 3.928 5 N -0.691 5.691 6 C 0.069 3.931 7 C -0.002 4.002 8 N -0.496 5.496 9 C 0.037 3.963 10 C 0.463 3.537 11 O -0.592 6.592 12 N -0.707 5.707 13 C 0.269 3.731 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.985 3.015 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.335 0.665 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.408 0.592 35 H -0.017 1.017 36 H -0.017 1.017 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -15.595 5.287 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.057 0.943 4 C -0.058 4.058 5 N -0.318 5.318 6 C -0.061 4.061 7 C -0.132 4.132 8 N -0.218 5.218 9 C -0.095 4.095 10 C 0.250 3.750 11 O -0.474 6.474 12 N -0.357 5.357 13 C 0.145 3.855 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.808 3.192 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.243 0.757 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.052 -16.169 6.395 17.854 hybrid contribution 0.069 2.500 -1.727 3.039 sum -3.983 -13.670 4.668 14.984 Atomic orbital electron populations 1.21793 0.92902 1.03076 1.01829 1.22677 0.97179 0.97077 0.91961 0.94326 1.22124 0.87193 1.01258 0.95182 1.60864 1.08156 1.23340 1.39403 1.22059 0.99948 0.98347 0.85784 1.23082 0.88242 1.00392 1.01456 1.62719 1.08496 1.49641 1.00990 1.22538 1.03017 0.87796 0.96142 1.22855 0.80193 0.90330 0.81604 1.90553 1.42308 1.74049 1.40536 1.46383 1.53751 1.15470 1.20089 1.18473 0.92294 0.78705 0.95990 1.21663 1.35196 0.99732 1.02815 0.89806 1.26080 0.94441 0.97267 1.01800 1.70140 1.37738 1.10760 1.38457 0.85107 0.78137 0.78358 0.77603 1.17540 1.20427 1.20424 0.90199 0.91417 0.93571 0.89791 0.89493 0.84801 0.89622 0.89435 0.89923 0.94949 0.85407 0.85693 0.75652 0.99886 0.99860 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.87 71.98 0.64 -2.43 16 2 C 0.02 0.57 2.20 44.92 0.10 0.67 16 3 H 0.04 1.41 5.61 -2.39 -0.01 1.40 16 4 C 0.07 1.68 6.00 86.31 0.52 2.19 16 5 N -0.69 -17.06 6.91 -513.44 -3.55 -20.61 16 6 C 0.07 1.59 6.72 86.31 0.58 2.17 16 7 C 0.00 -0.06 5.19 86.31 0.45 0.39 16 8 N -0.50 -13.14 4.73 -875.05 -4.14 -17.28 16 9 C 0.04 0.97 5.53 85.56 0.47 1.44 16 10 C 0.46 17.84 7.21 87.66 0.63 18.47 16 11 O -0.59 -27.76 11.60 -3.06 -0.04 -27.79 16 12 N -0.71 -29.32 5.55 -466.80 -2.59 -31.91 16 13 C 0.27 14.72 5.43 85.63 0.46 15.18 16 14 C -0.56 -30.19 9.28 25.60 0.24 -29.96 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 18 Si 0.98 42.15 29.54 68.60 2.03 44.18 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.10 6.26 -2.38 -0.01 1.08 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.34 9.04 8.89 -89.70 -0.80 8.24 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.18 5.59 -2.39 -0.01 1.17 16 32 H 0.13 2.85 6.01 -2.39 -0.01 2.83 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.41 13.91 8.32 -92.71 -0.77 13.13 16 35 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 36 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 37 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -69.12 292.83 -3.94 -73.07 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.49 Total: 27.66 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 4.55 Total: 8.79 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -9.99 Total: -125.91 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.04 Total: -27.79 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.12 -3.94 -73.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054374189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.205 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds