Wall clock time and date at job start Mon Mar 30 2020 03:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.57288 * 2 1 4 4 C 1.53126 * 109.52079 * 120.15958 * 2 1 3 5 5 C 1.53039 * 109.27449 * 177.56194 * 4 2 1 6 6 N 1.46847 * 109.52415 * 300.81595 * 5 4 2 7 7 C 1.46894 * 111.00301 * 185.84283 * 6 5 4 8 8 C 1.50697 * 109.47436 * 169.40141 * 7 6 5 9 9 O 1.21291 * 119.99911 * 353.73505 * 8 7 6 10 10 N 1.34775 * 120.00062 * 173.73091 * 8 7 6 11 11 C 1.37100 * 119.99889 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00122 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99491 * 179.72679 * 11 10 8 14 14 N 1.31411 * 120.00647 * 0.27531 * 13 11 10 15 15 Si 1.86804 * 119.99542 * 180.27752 * 13 11 10 16 16 H 1.48505 * 109.47242 * 60.00042 * 15 13 11 17 17 H 1.48498 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47158 * 299.99811 * 15 13 11 19 19 C 1.46848 * 111.19414 * 61.74398 * 6 5 4 20 20 C 1.53032 * 109.52718 * 298.25505 * 19 6 5 21 21 H 1.08995 * 109.50511 * 299.20229 * 20 19 6 22 22 N 1.46899 * 109.50634 * 179.11898 * 20 19 6 23 23 H 1.09005 * 109.46988 * 180.15324 * 1 2 3 24 24 H 1.08994 * 109.47465 * 300.15667 * 1 2 3 25 25 H 1.09005 * 109.46809 * 60.16272 * 1 2 3 26 26 H 1.09001 * 109.49736 * 297.49867 * 4 2 1 27 27 H 1.08996 * 109.50078 * 57.62124 * 4 2 1 28 28 H 1.08996 * 109.45862 * 180.80652 * 5 4 2 29 29 H 1.08992 * 109.46226 * 60.83478 * 5 4 2 30 30 H 1.09006 * 109.47265 * 49.39876 * 7 6 5 31 31 H 1.09005 * 109.47135 * 289.40115 * 7 6 5 32 32 H 0.97001 * 120.00088 * 0.02562 * 10 8 7 33 33 H 0.96996 * 119.99972 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46482 * 58.27918 * 19 6 5 35 35 H 1.09000 * 109.45852 * 178.24161 * 19 6 5 36 36 H 1.00904 * 110.99620 * 60.00643 * 22 20 19 37 37 H 1.00903 * 111.00366 * 183.95502 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 3.5709 -0.7751 1.2117 6 7 4.0103 -1.4789 0.0001 7 6 5.4671 -1.6678 0.0001 8 6 5.8516 -2.6094 -1.1119 9 8 4.9907 -3.1656 -1.7605 10 7 7.1520 -2.8334 -1.3858 11 6 7.5018 -3.6905 -2.3971 12 1 6.7353 -4.1858 -2.9745 13 6 8.8426 -3.9171 -2.6831 14 7 9.7754 -3.3141 -1.9808 15 14 9.3191 -5.0788 -4.0661 16 1 8.7583 -4.5796 -5.3474 17 1 10.7991 -5.1471 -4.1674 18 1 8.7788 -6.4328 -3.7835 19 6 3.5709 -0.7752 -1.2116 20 6 2.0418 -0.7251 -1.2478 21 1 1.6448 -1.7400 -1.2682 22 7 1.6030 -0.0026 -2.4493 23 1 -0.3633 -1.0277 0.0027 24 1 -0.3634 0.5162 0.8885 25 1 -0.3633 0.5113 -0.8915 26 1 1.7161 -0.1890 2.1393 27 1 1.6447 -1.7400 1.2674 28 1 3.9378 -1.3034 2.0917 29 1 3.9674 0.2401 1.2060 30 1 5.7790 -2.0881 0.9562 31 1 5.9581 -0.7065 -0.1518 32 1 7.8405 -2.3889 -0.8669 33 1 10.7113 -3.4726 -2.1803 34 1 3.9675 0.2401 -1.2059 35 1 3.9379 -1.3034 -2.0916 36 1 1.9313 -0.4604 -3.2864 37 1 0.5993 0.1000 -2.4632 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069719798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:16 Heat of formation + Delta-G solvation = -41.010154 kcal Electronic energy + Delta-G solvation = -17822.007268 eV Core-core repulsion = 15019.581765 eV Total energy + Delta-G solvation = -2802.425503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41097 -37.81220 -34.93467 -33.80765 -32.68878 -31.20256 -29.13376 -28.18123 -25.93700 -24.05218 -22.37691 -21.48389 -19.43255 -19.13236 -17.82478 -16.05198 -15.85463 -15.42958 -14.95992 -14.59252 -14.54207 -14.03377 -13.87827 -13.56408 -13.06622 -12.72658 -12.65233 -12.24092 -11.97372 -11.82011 -11.49294 -11.34648 -11.22950 -10.94428 -10.67306 -10.42787 -10.34190 -10.19134 -10.06497 -9.42833 -8.58502 -8.38129 -7.93875 -7.79078 -6.38770 -3.79551 3.21819 3.27258 3.31598 3.94875 3.97809 4.23943 4.64749 4.81725 4.88859 4.98781 5.19350 5.27652 5.42048 5.47331 5.53481 5.59119 5.69907 5.72421 5.87605 5.90927 5.92487 6.05075 6.11305 6.16240 6.20945 6.33243 6.45546 6.50391 7.18826 7.36313 7.49497 7.57104 7.58359 8.09475 8.65503 9.21126 9.58117 10.10330 10.79047 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044943 B = 0.005041 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.862137 B = 5552.592913 C = 5945.377740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.109 4.109 5 C 0.054 3.946 6 N -0.515 5.515 7 C 0.047 3.953 8 C 0.444 3.556 9 O -0.578 6.578 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.064 3.936 20 C 0.102 3.898 21 H 0.045 0.955 22 N -0.849 5.849 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.029 0.971 35 H 0.094 0.906 36 H 0.344 0.656 37 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 7.291 5.489 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.075 4.075 6 N -0.240 5.240 7 C -0.084 4.084 8 C 0.229 3.771 9 O -0.462 6.462 10 N -0.202 5.202 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.064 4.064 20 C -0.010 4.010 21 H 0.063 0.937 22 N -0.380 5.380 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.156 0.844 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.634 7.041 5.316 15.410 hybrid contribution 0.718 -0.369 -0.540 0.971 sum -11.916 6.671 4.776 14.468 Atomic orbital electron populations 1.21837 0.95575 1.01547 1.01500 1.21232 0.95204 0.99792 0.94488 0.90944 1.21616 0.94967 1.01185 0.96977 1.22120 0.95617 0.96370 0.93354 1.61410 1.11625 1.49420 1.01550 1.21838 0.87968 0.98607 0.99994 1.19766 0.83440 0.86600 0.87246 1.90492 1.49119 1.53350 1.53191 1.41876 1.05282 1.41131 1.31949 1.19641 0.92205 1.20801 1.10167 0.88029 1.25246 0.95372 0.98412 0.98871 1.69605 1.00864 1.43352 1.40608 0.85930 0.77120 0.80358 0.80878 1.19952 1.20994 1.19920 1.22069 0.93920 0.96051 0.94371 1.21274 0.95212 0.95036 0.89451 0.93665 1.58703 1.17152 1.57405 1.04746 0.92863 0.92756 0.92581 0.91579 0.91061 0.90823 0.95241 0.89264 0.93603 0.77509 0.91858 0.95234 0.88765 0.84359 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.93 37.16 0.33 -1.10 16 2 C -0.09 -1.06 2.49 -90.49 -0.22 -1.29 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.29 5.38 -26.65 -0.14 -1.44 16 5 C 0.05 0.73 5.46 -3.83 -0.02 0.71 16 6 N -0.52 -8.98 4.35 -236.12 -1.03 -10.00 16 7 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 8 C 0.44 10.68 7.31 -10.99 -0.08 10.60 16 9 O -0.58 -15.74 14.29 5.55 0.08 -15.67 16 10 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 11 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 15 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.06 1.11 4.69 -3.84 -0.02 1.10 16 20 C 0.10 1.46 2.90 -67.63 -0.20 1.27 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 N -0.85 -10.69 9.24 -4.60 -0.04 -10.73 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.51 6.63 -51.93 -0.34 0.16 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 1.49 7.98 -51.93 -0.41 1.08 16 31 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.96 6.06 -51.93 -0.31 1.65 16 36 H 0.34 4.32 9.04 -39.29 -0.36 3.97 16 37 H 0.34 3.50 7.15 -39.29 -0.28 3.22 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -30.69 296.35 -7.26 -37.95 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.76 Total: 13.79 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -0.62 Total: 2.67 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.40 Total: -59.41 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.69 -7.26 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069719798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.057 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds