Wall clock time and date at job start Mon Mar 30 2020 03:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.57288 * 2 1 4 4 C 1.53126 * 109.52079 * 120.15958 * 2 1 3 5 5 C 1.53039 * 109.27449 * 177.56194 * 4 2 1 6 6 N 1.46847 * 109.52415 * 300.81595 * 5 4 2 7 7 C 1.46894 * 111.00301 * 185.84283 * 6 5 4 8 8 C 1.50697 * 109.47436 * 169.40141 * 7 6 5 9 9 O 1.21291 * 119.99911 * 353.73505 * 8 7 6 10 10 N 1.34775 * 120.00062 * 173.73091 * 8 7 6 11 11 C 1.37100 * 119.99889 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00122 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99491 * 179.72679 * 11 10 8 14 14 N 1.31411 * 120.00647 * 0.27531 * 13 11 10 15 15 Si 1.86804 * 119.99542 * 180.27752 * 13 11 10 16 16 H 1.48505 * 109.47242 * 60.00042 * 15 13 11 17 17 H 1.48498 * 109.47057 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47158 * 299.99811 * 15 13 11 19 19 C 1.46848 * 111.19414 * 61.74398 * 6 5 4 20 20 C 1.53032 * 109.52718 * 298.25505 * 19 6 5 21 21 H 1.08995 * 109.50511 * 299.20229 * 20 19 6 22 22 N 1.46899 * 109.50634 * 179.11898 * 20 19 6 23 23 H 1.09005 * 109.46988 * 180.15324 * 1 2 3 24 24 H 1.08994 * 109.47465 * 300.15667 * 1 2 3 25 25 H 1.09005 * 109.46809 * 60.16272 * 1 2 3 26 26 H 1.09001 * 109.49736 * 297.49867 * 4 2 1 27 27 H 1.08996 * 109.50078 * 57.62124 * 4 2 1 28 28 H 1.08996 * 109.45862 * 180.80652 * 5 4 2 29 29 H 1.08992 * 109.46226 * 60.83478 * 5 4 2 30 30 H 1.09006 * 109.47265 * 49.39876 * 7 6 5 31 31 H 1.09005 * 109.47135 * 289.40115 * 7 6 5 32 32 H 0.97001 * 120.00088 * 0.02562 * 10 8 7 33 33 H 0.96996 * 119.99972 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.46482 * 58.27918 * 19 6 5 35 35 H 1.09000 * 109.45852 * 178.24161 * 19 6 5 36 36 H 1.00904 * 110.99620 * 60.00643 * 22 20 19 37 37 H 1.00903 * 111.00366 * 183.95502 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 3.5709 -0.7751 1.2117 6 7 4.0103 -1.4789 0.0001 7 6 5.4671 -1.6678 0.0001 8 6 5.8516 -2.6094 -1.1119 9 8 4.9907 -3.1656 -1.7605 10 7 7.1520 -2.8334 -1.3858 11 6 7.5018 -3.6905 -2.3971 12 1 6.7353 -4.1858 -2.9745 13 6 8.8426 -3.9171 -2.6831 14 7 9.7754 -3.3141 -1.9808 15 14 9.3191 -5.0788 -4.0661 16 1 8.7583 -4.5796 -5.3474 17 1 10.7991 -5.1471 -4.1674 18 1 8.7788 -6.4328 -3.7835 19 6 3.5709 -0.7752 -1.2116 20 6 2.0418 -0.7251 -1.2478 21 1 1.6448 -1.7400 -1.2682 22 7 1.6030 -0.0026 -2.4493 23 1 -0.3633 -1.0277 0.0027 24 1 -0.3634 0.5162 0.8885 25 1 -0.3633 0.5113 -0.8915 26 1 1.7161 -0.1890 2.1393 27 1 1.6447 -1.7400 1.2674 28 1 3.9378 -1.3034 2.0917 29 1 3.9674 0.2401 1.2060 30 1 5.7790 -2.0881 0.9562 31 1 5.9581 -0.7065 -0.1518 32 1 7.8405 -2.3889 -0.8669 33 1 10.7113 -3.4726 -2.1803 34 1 3.9675 0.2401 -1.2059 35 1 3.9379 -1.3034 -2.0916 36 1 1.9313 -0.4604 -3.2864 37 1 0.5993 0.1000 -2.4632 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069719798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:16 Heat of formation + Delta-G solvation = -65.485722 kcal Electronic energy + Delta-G solvation = -17823.068608 eV Core-core repulsion = 15019.581765 eV Total energy + Delta-G solvation = -2803.486843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80150 -39.50431 -36.32599 -35.72006 -33.76028 -33.26880 -30.31835 -29.44256 -27.51212 -25.73302 -23.50897 -22.65966 -21.01840 -20.52121 -19.87761 -17.77137 -17.08358 -16.72039 -16.51365 -16.24061 -15.77447 -15.61559 -15.42013 -15.07315 -14.32691 -14.04354 -13.92458 -13.50667 -13.29737 -13.20554 -13.09143 -12.84964 -12.45920 -12.43142 -12.40480 -12.12476 -11.65727 -11.51620 -11.31809 -11.17596 -10.27705 -10.00256 -9.66533 -9.20274 -8.46329 -5.95241 1.39446 1.40969 1.52119 2.05366 2.28256 2.71645 3.20121 3.29603 3.67646 3.85033 3.87090 4.02889 4.28051 4.29170 4.33893 4.47360 4.53444 4.55714 4.60096 4.77289 4.85297 4.94380 4.98414 5.04168 5.13951 5.21097 5.34818 5.40368 5.49698 5.89562 6.03490 6.14567 6.32232 6.56953 6.61251 7.12869 7.56352 8.12389 8.71038 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044943 B = 0.005041 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.862137 B = 5552.592913 C = 5945.377740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.106 4.106 5 C 0.050 3.950 6 N -0.533 5.533 7 C 0.058 3.942 8 C 0.441 3.559 9 O -0.615 6.615 10 N -0.575 5.575 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.921 5.921 15 Si 0.993 3.007 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.070 3.930 20 C 0.107 3.893 21 H 0.024 0.976 22 N -0.847 5.847 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.278 0.722 34 H 0.028 0.972 35 H 0.050 0.950 36 H 0.341 0.659 37 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 8.127 6.536 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.144 4.144 5 C -0.077 4.077 6 N -0.258 5.258 7 C -0.073 4.073 8 C 0.228 3.772 9 O -0.501 6.501 10 N -0.212 5.212 11 C -0.463 4.463 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.562 5.562 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.197 1.197 19 C -0.059 4.059 20 C -0.004 4.004 21 H 0.042 0.958 22 N -0.379 5.379 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.267 7.901 6.389 16.711 hybrid contribution 0.883 -0.605 -0.855 1.370 sum -12.384 7.296 5.533 15.401 Atomic orbital electron populations 1.21797 0.93557 1.01822 1.02773 1.21208 0.96853 0.99127 0.93064 0.91017 1.21643 0.93501 1.01128 0.98095 1.22283 0.96975 0.96628 0.91771 1.61406 1.10633 1.50814 1.02981 1.21733 0.89338 0.97825 0.98438 1.20768 0.82435 0.86325 0.87662 1.90465 1.49990 1.54839 1.54757 1.41944 1.06105 1.41285 1.31899 1.19616 0.92470 1.22534 1.11684 0.90393 1.26033 0.94756 0.99520 1.00883 1.69667 1.01254 1.43856 1.41451 0.84994 0.77399 0.78165 0.77801 1.19755 1.19404 1.19685 1.21931 0.95994 0.94973 0.92994 1.21176 0.93098 0.94644 0.91517 0.95841 1.58701 1.18321 1.56750 1.04132 0.93084 0.90920 0.91925 0.88487 0.91975 0.89399 0.94209 0.86872 0.92021 0.77078 0.91287 0.95364 0.93152 0.84626 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.93 71.98 0.64 -1.74 16 2 C -0.08 -1.83 2.49 -10.71 -0.03 -1.86 16 3 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -2.21 5.38 30.65 0.16 -2.05 16 5 C 0.05 1.26 5.46 86.33 0.47 1.73 16 6 N -0.53 -18.26 4.35 -900.95 -3.92 -22.18 16 7 C 0.06 2.12 5.45 85.56 0.47 2.59 16 8 C 0.44 21.74 7.31 87.66 0.64 22.38 16 9 O -0.61 -34.90 14.29 -3.07 -0.04 -34.94 16 10 N -0.57 -30.31 5.29 -306.99 -1.62 -31.94 16 11 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 12 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 14 N -0.92 -50.44 13.05 21.66 0.28 -50.15 16 15 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C 0.07 2.45 4.69 86.32 0.41 2.86 16 20 C 0.11 3.06 2.90 44.97 0.13 3.19 16 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 22 N -0.85 -20.95 9.24 -168.47 -1.56 -22.51 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.96 6.63 -2.38 -0.02 0.95 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.94 8.01 -2.39 -0.02 1.92 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 3.60 7.98 -2.38 -0.02 3.58 16 31 H 0.06 2.08 8.12 -2.38 -0.02 2.06 16 32 H 0.40 19.83 7.90 -92.71 -0.73 19.09 16 33 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 2.20 6.06 -2.39 -0.01 2.19 16 36 H 0.34 8.76 9.04 -89.69 -0.81 7.95 16 37 H 0.35 6.87 7.15 -89.69 -0.64 6.23 16 Total: -1.00 -67.39 296.35 -1.75 -69.14 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.10 Total: 38.65 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 4.18 Total: 8.41 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -6.81 Total: -126.77 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.04 Total: -34.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -67.39 -1.75 -69.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069719798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.657 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds