Wall clock time and date at job start Mon Mar 30 2020 04:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99680 * 2 1 4 4 C 1.50696 * 109.47071 * 293.95742 * 3 2 1 5 5 O 1.21277 * 120.00404 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99781 * 180.27677 * 4 3 2 7 7 C 1.46499 * 120.00032 * 179.72071 * 6 4 3 8 8 C 1.50701 * 109.47274 * 179.97438 * 7 6 4 9 9 H 1.08001 * 119.99606 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00207 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00063 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00153 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47025 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46870 * 120.00498 * 12 10 8 15 15 H 1.48506 * 109.47447 * 240.00294 * 12 10 8 16 16 C 1.46892 * 111.00055 * 123.95472 * 2 1 3 17 17 H 1.09007 * 110.64958 * 297.17473 * 16 2 1 18 18 C 1.54600 * 110.72238 * 174.02650 * 16 2 1 19 19 C 1.54001 * 105.13928 * 219.68572 * 18 16 2 20 20 N 1.47900 * 107.05633 * 358.77136 * 19 18 16 21 21 C 1.48532 * 105.82146 * 25.33414 * 20 19 18 22 22 H 1.08992 * 109.47639 * 65.72428 * 1 2 3 23 23 H 1.09004 * 109.47225 * 185.72743 * 1 2 3 24 24 H 1.08999 * 109.47040 * 305.72109 * 1 2 3 25 25 H 1.08998 * 109.46989 * 173.95525 * 3 2 1 26 26 H 1.08999 * 109.47015 * 53.95980 * 3 2 1 27 27 H 0.97004 * 119.99888 * 359.72654 * 6 4 3 28 28 H 1.09001 * 109.47443 * 300.00067 * 7 6 4 29 29 H 1.09006 * 109.46988 * 60.00436 * 7 6 4 30 30 H 0.96999 * 120.00021 * 179.97438 * 11 10 8 31 31 H 1.08996 * 110.31073 * 338.59605 * 18 16 2 32 32 H 1.09000 * 110.31074 * 100.77050 * 18 16 2 33 33 H 1.08996 * 109.91573 * 118.12418 * 19 18 16 34 34 H 1.09000 * 109.91766 * 239.22559 * 19 18 16 35 35 H 1.00908 * 111.00091 * 145.84373 * 20 19 18 36 36 H 1.09003 * 110.66744 * 202.36107 * 21 20 19 37 37 H 1.08997 * 110.67148 * 79.22727 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0053 1.4454 -2.1410 6 7 2.0230 3.3183 -1.5257 7 6 1.6797 3.9731 -2.7904 8 6 2.2238 5.3785 -2.7924 9 1 2.7711 5.7468 -1.9372 10 6 2.0240 6.1936 -3.8862 11 7 1.3580 5.7449 -4.9278 12 14 2.6991 7.9353 -3.8889 13 1 3.4051 8.1945 -2.6084 14 1 3.6491 8.0961 -5.0188 15 1 1.5803 8.8997 -4.0419 16 6 1.9954 -0.7660 1.1375 17 1 1.6983 -0.3069 2.0805 18 6 3.5341 -0.8882 1.0496 19 6 3.8498 -2.3264 1.5005 20 7 2.5620 -2.9635 1.8515 21 6 1.5263 -2.2410 1.0695 22 1 -0.3634 0.4225 -0.9367 23 1 -0.3634 -1.0226 0.1026 24 1 -0.3633 0.6000 0.8343 25 1 3.0796 1.3445 0.1082 26 1 1.5611 1.9273 0.8310 27 1 2.5284 3.7994 -0.8519 28 1 2.1141 3.4137 -3.6189 29 1 0.5957 4.0035 -2.9013 30 1 1.2171 6.3185 -5.6972 31 1 3.8681 -0.7315 0.0239 32 1 4.0095 -0.1695 1.7171 33 1 4.3257 -2.8744 0.6874 34 1 4.5070 -2.3072 2.3699 35 1 2.5696 -3.9458 1.6206 36 1 0.5459 -2.3546 1.5322 37 1 1.5088 -2.5920 0.0377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070894658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:20 Heat of formation + Delta-G solvation = -27.115193 kcal Electronic energy + Delta-G solvation = -17362.337425 eV Core-core repulsion = 14560.514453 eV Total energy + Delta-G solvation = -2801.822972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58479 -38.36070 -35.53089 -34.07753 -32.32608 -30.01838 -29.29394 -27.85754 -26.64853 -24.12729 -22.28404 -21.40883 -20.08113 -19.54185 -17.28416 -16.84285 -16.23613 -15.53294 -15.25298 -15.05359 -14.55083 -14.09600 -13.92028 -13.51246 -13.37018 -12.72984 -12.53508 -12.32278 -12.05470 -11.98947 -11.87848 -11.34291 -11.16429 -11.02715 -10.93729 -10.91710 -10.81466 -10.31137 -9.37755 -9.01075 -8.77322 -8.73555 -8.21803 -7.84404 -6.16906 -4.23746 3.23104 3.30110 3.33126 3.40094 3.57144 4.11098 4.30797 4.47373 4.51523 4.58787 4.92750 5.13095 5.19181 5.23023 5.36114 5.45687 5.53222 5.57326 5.65378 5.66434 5.70913 5.77379 5.85635 5.95591 6.32265 6.47715 6.92403 7.08886 7.16166 7.33466 7.46746 7.52640 7.68217 7.97306 8.64751 8.79660 9.14138 9.43265 10.93343 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053137 B = 0.004097 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.813279 B = 6833.405727 C = 7120.504745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.034 3.966 4 C 0.499 3.501 5 O -0.539 6.539 6 N -0.715 5.715 7 C 0.251 3.749 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.078 3.922 17 H 0.054 0.946 18 C -0.129 4.129 19 C 0.042 3.958 20 N -0.675 5.675 21 C 0.047 3.953 22 H 0.094 0.906 23 H 0.064 0.936 24 H 0.020 0.980 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.389 0.611 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.338 0.662 36 H 0.079 0.921 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -12.766 13.679 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.240 5.240 3 C -0.097 4.097 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.364 5.364 7 C 0.130 3.870 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.031 4.031 17 H 0.072 0.928 18 C -0.168 4.168 19 C -0.087 4.087 20 N -0.304 5.304 21 C -0.083 4.083 22 H 0.113 0.887 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.566 -13.020 13.070 18.626 hybrid contribution 0.505 1.317 0.045 1.411 sum 3.071 -11.703 13.115 17.844 Atomic orbital electron populations 1.22591 0.86354 1.01372 1.02640 1.61745 1.08859 1.12216 1.41157 1.22051 1.01714 0.89454 0.96488 1.20281 0.80658 0.82386 0.88368 1.90617 1.40237 1.64249 1.46621 1.46452 1.55701 1.12682 1.21613 1.19086 0.96494 0.91525 0.79884 1.21270 1.36682 0.97347 1.02788 0.91870 1.24957 0.94971 0.98984 0.95147 1.69989 1.39709 1.36740 1.05854 0.86364 0.78720 0.83704 0.78134 1.19639 1.20792 1.20804 1.22542 0.94694 0.93782 0.92089 0.92838 1.22524 0.95195 0.96476 1.02583 1.22600 0.92219 0.94447 0.99449 1.63028 1.03819 1.06933 1.56620 1.23021 0.95669 0.92676 0.96890 0.88721 0.91761 0.96192 0.88381 0.92455 0.77850 0.95545 0.95633 0.92510 0.89936 0.91069 0.93909 0.90548 0.84644 0.90242 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.07 60.07 0.54 0.80 16 2 N -0.52 -7.38 4.33 -234.09 -1.01 -8.39 16 3 C 0.03 0.50 5.31 -4.98 -0.03 0.47 16 4 C 0.50 9.94 7.59 -10.99 -0.08 9.86 16 5 O -0.54 -12.89 14.31 5.56 0.08 -12.81 16 6 N -0.72 -15.01 5.55 -61.47 -0.34 -15.35 16 7 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 8 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 12 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.08 0.91 2.75 -65.85 -0.18 0.73 16 17 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.13 -1.35 5.32 -25.37 -0.14 -1.48 16 19 C 0.04 0.39 7.52 -2.75 -0.02 0.37 16 20 N -0.67 -6.45 7.51 -110.08 -0.83 -7.28 16 21 C 0.05 0.49 5.90 -1.90 -0.01 0.48 16 22 H 0.09 1.64 6.00 -51.93 -0.31 1.33 16 23 H 0.06 0.78 6.63 -51.93 -0.34 0.43 16 24 H 0.02 0.26 8.07 -51.93 -0.42 -0.16 16 25 H 0.10 1.25 6.77 -51.93 -0.35 0.90 16 26 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 27 H 0.39 6.96 8.32 -40.82 -0.34 6.63 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 31 H 0.08 0.96 7.81 -51.93 -0.41 0.56 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.34 2.64 8.92 -39.29 -0.35 2.29 16 36 H 0.08 0.79 7.77 -51.93 -0.40 0.38 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -31.78 300.71 -8.05 -39.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.84 Total: 4.59 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.36 Total: 4.47 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -1.45 Total: -56.42 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.78 -8.05 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.711 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds