Wall clock time and date at job start Mon Mar 30 2020 04:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99680 * 2 1 4 4 C 1.50696 * 109.47071 * 293.95742 * 3 2 1 5 5 O 1.21277 * 120.00404 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99781 * 180.27677 * 4 3 2 7 7 C 1.46499 * 120.00032 * 179.72071 * 6 4 3 8 8 C 1.50701 * 109.47274 * 179.97438 * 7 6 4 9 9 H 1.08001 * 119.99606 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00207 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00063 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00153 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47025 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46870 * 120.00498 * 12 10 8 15 15 H 1.48506 * 109.47447 * 240.00294 * 12 10 8 16 16 C 1.46892 * 111.00055 * 123.95472 * 2 1 3 17 17 H 1.09007 * 110.64958 * 297.17473 * 16 2 1 18 18 C 1.54600 * 110.72238 * 174.02650 * 16 2 1 19 19 C 1.54001 * 105.13928 * 219.68572 * 18 16 2 20 20 N 1.47900 * 107.05633 * 358.77136 * 19 18 16 21 21 C 1.48532 * 105.82146 * 25.33414 * 20 19 18 22 22 H 1.08992 * 109.47639 * 65.72428 * 1 2 3 23 23 H 1.09004 * 109.47225 * 185.72743 * 1 2 3 24 24 H 1.08999 * 109.47040 * 305.72109 * 1 2 3 25 25 H 1.08998 * 109.46989 * 173.95525 * 3 2 1 26 26 H 1.08999 * 109.47015 * 53.95980 * 3 2 1 27 27 H 0.97004 * 119.99888 * 359.72654 * 6 4 3 28 28 H 1.09001 * 109.47443 * 300.00067 * 7 6 4 29 29 H 1.09006 * 109.46988 * 60.00436 * 7 6 4 30 30 H 0.96999 * 120.00021 * 179.97438 * 11 10 8 31 31 H 1.08996 * 110.31073 * 338.59605 * 18 16 2 32 32 H 1.09000 * 110.31074 * 100.77050 * 18 16 2 33 33 H 1.08996 * 109.91573 * 118.12418 * 19 18 16 34 34 H 1.09000 * 109.91766 * 239.22559 * 19 18 16 35 35 H 1.00908 * 111.00091 * 145.84373 * 20 19 18 36 36 H 1.09003 * 110.66744 * 202.36107 * 21 20 19 37 37 H 1.08997 * 110.67148 * 79.22727 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0053 1.4454 -2.1410 6 7 2.0230 3.3183 -1.5257 7 6 1.6797 3.9731 -2.7904 8 6 2.2238 5.3785 -2.7924 9 1 2.7711 5.7468 -1.9372 10 6 2.0240 6.1936 -3.8862 11 7 1.3580 5.7449 -4.9278 12 14 2.6991 7.9353 -3.8889 13 1 3.4051 8.1945 -2.6084 14 1 3.6491 8.0961 -5.0188 15 1 1.5803 8.8997 -4.0419 16 6 1.9954 -0.7660 1.1375 17 1 1.6983 -0.3069 2.0805 18 6 3.5341 -0.8882 1.0496 19 6 3.8498 -2.3264 1.5005 20 7 2.5620 -2.9635 1.8515 21 6 1.5263 -2.2410 1.0695 22 1 -0.3634 0.4225 -0.9367 23 1 -0.3634 -1.0226 0.1026 24 1 -0.3633 0.6000 0.8343 25 1 3.0796 1.3445 0.1082 26 1 1.5611 1.9273 0.8310 27 1 2.5284 3.7994 -0.8519 28 1 2.1141 3.4137 -3.6189 29 1 0.5957 4.0035 -2.9013 30 1 1.2171 6.3185 -5.6972 31 1 3.8681 -0.7315 0.0239 32 1 4.0095 -0.1695 1.7171 33 1 4.3257 -2.8744 0.6874 34 1 4.5070 -2.3072 2.3699 35 1 2.5696 -3.9458 1.6206 36 1 0.5459 -2.3546 1.5322 37 1 1.5088 -2.5920 0.0377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070894658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:19 Heat of formation + Delta-G solvation = -53.941245 kcal Electronic energy + Delta-G solvation = -17363.500690 eV Core-core repulsion = 14560.514453 eV Total energy + Delta-G solvation = -2802.986237 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88168 -39.60941 -36.68670 -35.94615 -34.34194 -30.86316 -30.63607 -29.13367 -28.17733 -25.51185 -24.08536 -22.21512 -21.40543 -20.85158 -18.93576 -18.04094 -17.41744 -16.98740 -16.96447 -16.37786 -16.14349 -15.26564 -15.25419 -14.89465 -14.50241 -14.12110 -13.98322 -13.72720 -13.54465 -13.14389 -12.92141 -12.88249 -12.79542 -12.55054 -12.22438 -12.12986 -11.88170 -11.72374 -11.45231 -10.81181 -10.65394 -9.80738 -9.51412 -9.30527 -8.29219 -6.45816 1.43388 1.44478 1.57987 1.79792 2.24753 2.43816 2.98126 3.05791 3.43835 3.69078 3.77258 3.96494 4.15068 4.25983 4.31480 4.34604 4.48660 4.53943 4.66754 4.76666 4.90304 4.95433 5.03697 5.10632 5.11517 5.19796 5.24809 5.50189 5.67773 5.71471 5.85122 5.89572 6.16633 6.39980 6.65884 6.95500 7.24035 7.53943 8.83225 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053137 B = 0.004097 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.813279 B = 6833.405727 C = 7120.504745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.534 5.534 3 C 0.049 3.951 4 C 0.495 3.505 5 O -0.584 6.584 6 N -0.710 5.710 7 C 0.268 3.732 8 C -0.555 4.555 9 H 0.084 0.916 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.252 1.252 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.079 3.921 17 H 0.062 0.938 18 C -0.129 4.129 19 C 0.043 3.957 20 N -0.676 5.676 21 C 0.050 3.950 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.408 0.592 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.268 0.732 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.348 0.652 36 H 0.086 0.914 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 -12.295 16.159 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.082 4.082 4 C 0.282 3.718 5 O -0.465 6.465 6 N -0.361 5.361 7 C 0.145 3.855 8 C -0.592 4.592 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.176 1.176 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.030 4.030 17 H 0.080 0.920 18 C -0.168 4.168 19 C -0.086 4.086 20 N -0.306 5.306 21 C -0.080 4.080 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.142 0.858 26 H 0.102 0.898 27 H 0.243 0.757 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.105 0.895 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.070 -12.573 15.607 20.451 hybrid contribution 0.013 1.065 -0.731 1.292 sum 4.083 -11.508 14.876 19.246 Atomic orbital electron populations 1.22468 0.86637 1.02423 1.00987 1.61674 1.08879 1.12196 1.43178 1.21953 1.03336 0.89586 0.93304 1.21318 0.79082 0.81608 0.89842 1.90607 1.41972 1.65140 1.48740 1.46186 1.56242 1.13400 1.20250 1.18509 0.93719 0.91948 0.81325 1.21660 1.36651 0.97328 1.03609 0.89756 1.26078 0.94994 1.04093 0.94522 1.70151 1.41234 1.38828 1.06831 0.85103 0.77954 0.77209 0.78895 1.17557 1.20490 1.20488 1.22601 0.95468 0.93805 0.91101 0.92040 1.22544 0.94293 0.97793 1.02146 1.22632 0.92218 0.93660 1.00125 1.63047 1.03697 1.07636 1.56253 1.22966 0.96415 0.92184 0.96415 0.92629 0.89998 0.94883 0.85839 0.89784 0.75675 0.99640 0.99598 0.92280 0.91428 0.89485 0.93591 0.89266 0.83526 0.89534 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.07 127.69 1.16 1.79 16 2 N -0.53 -14.60 4.33 -894.53 -3.88 -18.47 16 3 C 0.05 1.34 5.31 85.56 0.45 1.79 16 4 C 0.49 19.87 7.59 87.65 0.67 20.53 16 5 O -0.58 -29.14 14.31 -3.02 -0.04 -29.18 16 6 N -0.71 -29.98 5.55 -466.78 -2.59 -32.57 16 7 C 0.27 14.81 5.43 85.63 0.46 15.28 16 8 C -0.55 -30.21 9.28 25.60 0.24 -29.97 16 9 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 10 C 0.00 0.14 5.46 84.65 0.46 0.60 16 11 N -0.93 -56.49 13.29 21.44 0.28 -56.21 16 12 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 13 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 15 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 16 C 0.08 1.64 2.75 46.12 0.13 1.77 16 17 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 18 C -0.13 -2.36 5.32 31.48 0.17 -2.19 16 19 C 0.04 0.68 7.52 86.45 0.65 1.33 16 20 N -0.68 -11.29 7.51 -502.19 -3.77 -15.06 16 21 C 0.05 0.95 5.90 86.65 0.51 1.47 16 22 H 0.05 2.00 6.00 -2.39 -0.01 1.98 16 23 H 0.08 1.91 6.63 -2.39 -0.02 1.90 16 24 H 0.03 0.81 8.07 -2.39 -0.02 0.79 16 25 H 0.12 2.79 6.77 -2.39 -0.02 2.77 16 26 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 27 H 0.41 14.04 8.32 -92.71 -0.77 13.26 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 30 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.07 1.45 7.81 -2.39 -0.02 1.43 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.35 4.68 8.92 -89.69 -0.80 3.88 16 36 H 0.09 1.53 7.77 -2.39 -0.02 1.51 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.25 300.71 -3.57 -74.82 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.50 Total: 19.96 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.90 Total: 12.40 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -9.95 Total: -122.31 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.04 Total: -29.18 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -71.25 -3.57 -74.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.881 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds