Wall clock time and date at job start Mon Mar 30 2020 03:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 119.99820 * 2 1 4 4 O 1.21279 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99994 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47025 * 328.75847 * 5 3 2 7 7 C 1.53004 * 109.47165 * 88.75442 * 5 3 2 8 8 N 1.46899 * 109.47284 * 208.75726 * 5 3 2 9 9 C 1.46891 * 111.00189 * 62.36627 * 8 5 3 10 10 C 1.53244 * 109.33975 * 187.25495 * 9 8 5 11 11 N 1.47080 * 108.52074 * 306.16900 * 10 9 8 12 12 C 1.36935 * 120.88396 * 231.19061 * 11 10 9 13 13 H 1.07999 * 120.00105 * 27.65687 * 12 11 10 14 14 C 1.38807 * 119.99958 * 207.66586 * 12 11 10 15 15 N 1.31626 * 120.00159 * 16.49284 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 196.48736 * 14 12 11 17 17 H 1.48496 * 109.47783 * 270.00170 * 16 14 12 18 18 H 1.48504 * 109.47145 * 30.00478 * 16 14 12 19 19 H 1.48506 * 109.47212 * 150.00067 * 16 14 12 20 20 C 1.47083 * 118.23386 * 51.45866 * 11 10 9 21 21 C 1.46898 * 110.99851 * 186.67221 * 8 5 3 22 22 H 1.08999 * 109.47616 * 300.00445 * 1 2 3 23 23 H 1.09007 * 109.46938 * 59.99974 * 1 2 3 24 24 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99982 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47204 * 59.99815 * 7 5 3 27 27 H 1.08990 * 109.47340 * 180.02562 * 7 5 3 28 28 H 1.09007 * 109.46839 * 300.00633 * 7 5 3 29 29 H 1.09005 * 109.49318 * 67.29764 * 9 8 5 30 30 H 1.09000 * 109.51719 * 307.22463 * 9 8 5 31 31 H 1.09002 * 109.62389 * 186.46280 * 10 9 8 32 32 H 1.08997 * 109.78676 * 65.97619 * 10 9 8 33 33 H 0.96995 * 119.99828 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.62720 * 68.25285 * 20 11 10 35 35 H 1.09005 * 109.62321 * 188.83198 * 20 11 10 36 36 H 1.09000 * 109.49260 * 292.70586 * 21 8 5 37 37 H 1.09003 * 109.49796 * 52.75324 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0090 0.2887 0.5339 7 6 4.1564 1.1356 -1.4414 8 7 4.1353 2.3815 0.6668 9 6 3.7105 2.4184 2.0725 10 6 4.0824 3.7754 2.6796 11 7 5.5174 4.0093 2.4572 12 6 6.3411 4.3609 3.4930 13 1 6.1027 4.0540 4.5006 14 6 7.4823 5.1120 3.2480 15 7 7.6132 5.7577 2.1084 16 14 8.8324 5.2068 4.5355 17 1 8.5728 6.3542 5.4416 18 1 8.8538 3.9485 5.3238 19 1 10.1441 5.3928 3.8645 20 6 6.0430 3.8613 1.0915 21 6 5.5950 2.4952 0.5480 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8400 0.0004 26 1 3.7932 2.0141 -1.9748 27 1 5.2463 1.1351 -1.4410 28 1 3.7932 0.2345 -1.9357 29 1 4.2115 1.6233 2.6248 30 1 2.6313 2.2774 2.1306 31 1 3.8743 3.7671 3.7496 32 1 3.5040 4.5651 2.2002 33 1 8.4109 6.2822 1.9371 34 1 5.6493 4.6573 0.4594 35 1 7.1318 3.9100 1.1109 36 1 6.0697 1.6990 1.1214 37 1 5.8825 2.4097 -0.5000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:51 Heat of formation + Delta-G solvation = 3.424364 kcal Electronic energy + Delta-G solvation = -18230.603345 eV Core-core repulsion = 15430.104667 eV Total energy + Delta-G solvation = -2800.498678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90733 -37.67152 -34.68496 -34.47732 -31.97085 -29.94281 -29.89775 -27.07068 -26.10773 -23.76129 -22.57605 -21.73213 -20.08380 -19.06177 -17.12066 -16.89502 -16.02086 -15.32532 -14.93377 -14.45958 -14.14609 -13.98182 -13.53552 -13.40026 -13.13827 -12.77805 -12.41458 -12.40046 -12.18491 -11.93806 -11.39004 -11.15931 -10.98538 -10.67726 -10.48372 -10.27778 -10.06942 -9.72493 -9.54369 -9.44528 -9.13445 -8.45754 -7.76185 -6.59123 -5.73086 -3.14579 2.78433 3.17400 3.40317 3.46937 3.49176 4.34448 4.54576 4.78372 5.10360 5.21321 5.21532 5.40140 5.44607 5.48077 5.62383 5.66912 5.81427 5.96748 6.01545 6.19148 6.20451 6.26034 6.36280 6.39879 6.60555 6.75897 7.05056 7.30552 7.37604 7.65718 7.70149 7.74857 7.86319 8.37102 8.49307 9.26761 9.90014 10.50067 11.35841 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.005667 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.891989 B = 4939.630395 C = 5186.563692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.745 5.745 3 C 0.517 3.483 4 O -0.512 6.512 5 C 0.064 3.936 6 H 0.050 0.950 7 C -0.141 4.141 8 N -0.510 5.510 9 C 0.046 3.954 10 C 0.151 3.849 11 N -0.596 5.596 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.281 1.281 19 H -0.290 1.290 20 C 0.180 3.820 21 C 0.032 3.968 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.399 0.601 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.253 0.747 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -14.143 -5.744 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.398 5.398 3 C 0.302 3.698 4 O -0.385 6.385 5 C -0.048 4.048 6 H 0.067 0.933 7 C -0.199 4.199 8 N -0.236 5.236 9 C -0.083 4.083 10 C 0.025 3.975 11 N -0.319 5.319 12 C -0.381 4.381 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.206 1.206 19 H -0.216 1.216 20 C 0.054 3.946 21 C -0.096 4.096 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.232 0.768 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.365 -12.822 -6.011 16.978 hybrid contribution 1.209 -1.107 1.046 1.944 sum -8.157 -13.929 -4.965 16.888 Atomic orbital electron populations 1.21472 0.79982 1.01750 1.02251 1.45908 1.07529 1.08834 1.77572 1.20715 0.90063 0.83433 0.75600 1.90713 1.69916 1.31084 1.46755 1.21577 0.91198 0.94275 0.97734 0.93265 1.21828 1.02196 1.02372 0.93502 1.61788 1.13129 1.33589 1.15076 1.22635 0.98614 0.99935 0.87154 1.20935 0.86798 0.92630 0.97186 1.44150 1.02059 1.80294 1.05389 1.19182 1.03308 1.26870 0.88697 0.91758 1.25041 1.00543 0.96794 0.97332 1.70032 1.27954 1.32283 1.24553 0.86309 0.81719 0.77823 0.80978 1.21416 1.20612 1.21580 1.20951 0.99429 0.89694 0.84552 1.23136 0.85153 1.01516 0.99835 0.92373 0.92435 0.91007 0.76839 0.90968 0.90804 0.92397 0.95736 0.92005 0.92743 0.95379 0.93655 0.95358 0.89346 0.95643 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.70 59.85 0.64 1.45 16 2 N -0.74 -7.91 5.71 -67.08 -0.38 -8.29 16 3 C 0.52 7.80 5.87 -10.99 -0.06 7.74 16 4 O -0.51 -10.02 15.87 5.56 0.09 -9.93 16 5 C 0.06 0.96 2.47 -68.86 -0.17 0.79 16 6 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 7 C -0.14 -1.77 8.74 37.16 0.32 -1.45 16 8 N -0.51 -9.78 4.20 -227.44 -0.96 -10.74 16 9 C 0.05 0.92 5.35 -3.70 -0.02 0.90 16 10 C 0.15 3.51 6.69 -3.60 -0.02 3.48 16 11 N -0.60 -15.73 3.03 -171.73 -0.52 -16.25 16 12 C -0.25 -7.09 9.62 -15.06 -0.14 -7.24 16 13 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 14 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 15 N -0.90 -26.73 11.18 55.49 0.62 -26.11 16 16 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.18 4.48 5.44 -3.36 -0.02 4.46 16 21 C 0.03 0.64 5.28 -3.46 -0.02 0.62 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.40 2.97 8.83 -40.82 -0.36 2.61 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.19 6.47 -51.93 -0.34 0.86 16 31 H 0.05 1.20 7.95 -51.93 -0.41 0.79 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.19 5.79 -51.93 -0.30 0.89 16 LS Contribution 294.99 15.07 4.45 4.45 Total: -1.00 -33.60 294.99 -7.14 -40.74 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.83 Total: -1.50 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 0.42 Total: 10.71 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -1.24 Total: -61.38 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.60 -7.14 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds