Wall clock time and date at job start Mon Mar 30 2020 03:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 119.99820 * 2 1 4 4 O 1.21279 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99994 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47025 * 328.75847 * 5 3 2 7 7 C 1.53004 * 109.47165 * 88.75442 * 5 3 2 8 8 N 1.46899 * 109.47284 * 208.75726 * 5 3 2 9 9 C 1.46891 * 111.00189 * 62.36627 * 8 5 3 10 10 C 1.53244 * 109.33975 * 187.25495 * 9 8 5 11 11 N 1.47080 * 108.52074 * 306.16900 * 10 9 8 12 12 C 1.36935 * 120.88396 * 231.19061 * 11 10 9 13 13 H 1.07999 * 120.00105 * 27.65687 * 12 11 10 14 14 C 1.38807 * 119.99958 * 207.66586 * 12 11 10 15 15 N 1.31626 * 120.00159 * 16.49284 * 14 12 11 16 16 Si 1.86797 * 120.00021 * 196.48736 * 14 12 11 17 17 H 1.48496 * 109.47783 * 270.00170 * 16 14 12 18 18 H 1.48504 * 109.47145 * 30.00478 * 16 14 12 19 19 H 1.48506 * 109.47212 * 150.00067 * 16 14 12 20 20 C 1.47083 * 118.23386 * 51.45866 * 11 10 9 21 21 C 1.46898 * 110.99851 * 186.67221 * 8 5 3 22 22 H 1.08999 * 109.47616 * 300.00445 * 1 2 3 23 23 H 1.09007 * 109.46938 * 59.99974 * 1 2 3 24 24 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99982 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47204 * 59.99815 * 7 5 3 27 27 H 1.08990 * 109.47340 * 180.02562 * 7 5 3 28 28 H 1.09007 * 109.46839 * 300.00633 * 7 5 3 29 29 H 1.09005 * 109.49318 * 67.29764 * 9 8 5 30 30 H 1.09000 * 109.51719 * 307.22463 * 9 8 5 31 31 H 1.09002 * 109.62389 * 186.46280 * 10 9 8 32 32 H 1.08997 * 109.78676 * 65.97619 * 10 9 8 33 33 H 0.96995 * 119.99828 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.62720 * 68.25285 * 20 11 10 35 35 H 1.09005 * 109.62321 * 188.83198 * 20 11 10 36 36 H 1.09000 * 109.49260 * 292.70586 * 21 8 5 37 37 H 1.09003 * 109.49796 * 52.75324 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0090 0.2887 0.5339 7 6 4.1564 1.1356 -1.4414 8 7 4.1353 2.3815 0.6668 9 6 3.7105 2.4184 2.0725 10 6 4.0824 3.7754 2.6796 11 7 5.5174 4.0093 2.4572 12 6 6.3411 4.3609 3.4930 13 1 6.1027 4.0540 4.5006 14 6 7.4823 5.1120 3.2480 15 7 7.6132 5.7577 2.1084 16 14 8.8324 5.2068 4.5355 17 1 8.5728 6.3542 5.4416 18 1 8.8538 3.9485 5.3238 19 1 10.1441 5.3928 3.8645 20 6 6.0430 3.8613 1.0915 21 6 5.5950 2.4952 0.5480 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8400 0.0004 26 1 3.7932 2.0141 -1.9748 27 1 5.2463 1.1351 -1.4410 28 1 3.7932 0.2345 -1.9357 29 1 4.2115 1.6233 2.6248 30 1 2.6313 2.2774 2.1306 31 1 3.8743 3.7671 3.7496 32 1 3.5040 4.5651 2.2002 33 1 8.4109 6.2822 1.9371 34 1 5.6493 4.6573 0.4594 35 1 7.1318 3.9100 1.1109 36 1 6.0697 1.6990 1.1214 37 1 5.8825 2.4097 -0.5000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:50 Heat of formation + Delta-G solvation = -22.855578 kcal Electronic energy + Delta-G solvation = -18231.742929 eV Core-core repulsion = 15430.104667 eV Total energy + Delta-G solvation = -2801.638261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14388 -39.23509 -36.40465 -35.54867 -33.77948 -31.69899 -31.52650 -27.98400 -27.92698 -25.32335 -24.37301 -23.20210 -21.27988 -20.80527 -18.78835 -18.24833 -17.46258 -16.71566 -16.44176 -15.98402 -15.56959 -15.31267 -15.27638 -15.02725 -14.92574 -14.10985 -13.90980 -13.48974 -13.34237 -13.07447 -12.88692 -12.76698 -12.58259 -12.53687 -12.31969 -12.09171 -11.97893 -11.61971 -11.38065 -10.72104 -10.59338 -10.10076 -9.24944 -8.68431 -7.87533 -5.34100 1.47863 1.48338 1.59057 1.63363 2.19402 2.51275 2.97733 3.28030 3.65139 3.80918 4.08979 4.12325 4.21744 4.29879 4.48913 4.53371 4.57873 4.64140 4.64850 4.75312 4.77683 4.92726 4.97553 4.99911 5.11927 5.26321 5.35132 5.47390 5.60649 5.67375 6.11050 6.15825 6.37158 6.62990 7.12720 7.32856 7.81535 8.38374 9.19644 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048949 B = 0.005667 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.891989 B = 4939.630395 C = 5186.563692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.724 5.724 3 C 0.515 3.485 4 O -0.567 6.567 5 C 0.063 3.937 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.532 5.532 9 C 0.063 3.937 10 C 0.148 3.852 11 N -0.612 5.612 12 C -0.268 4.268 13 H 0.067 0.933 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.286 1.286 18 H -0.269 1.269 19 H -0.289 1.289 20 C 0.185 3.815 21 C 0.051 3.949 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.418 0.582 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.003 0.997 33 H 0.251 0.749 34 H -0.007 1.007 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -17.028 -5.706 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.300 3.700 4 O -0.444 6.444 5 C -0.049 4.049 6 H 0.096 0.904 7 C -0.195 4.195 8 N -0.259 5.259 9 C -0.066 4.066 10 C 0.022 3.978 11 N -0.336 5.336 12 C -0.398 4.398 13 H 0.085 0.915 14 C -0.245 4.245 15 N -0.582 5.582 16 Si 0.800 3.200 17 H -0.213 1.213 18 H -0.194 1.194 19 H -0.215 1.215 20 C 0.059 3.941 21 C -0.078 4.078 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.133 0.867 25 H 0.255 0.745 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.011 0.989 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.486 -15.788 -5.977 19.364 hybrid contribution 1.136 -0.225 1.008 1.535 sum -8.351 -16.014 -4.969 18.731 Atomic orbital electron populations 1.21647 0.78750 1.04222 1.01182 1.45758 1.08347 1.08366 1.75286 1.20804 0.90203 0.83819 0.75138 1.90701 1.70804 1.33223 1.49698 1.21722 0.91243 0.93083 0.98847 0.90365 1.21835 1.02516 1.03207 0.91903 1.61620 1.12430 1.37093 1.14720 1.22334 0.98924 0.97572 0.87796 1.21019 0.85035 0.94093 0.97694 1.44427 1.03181 1.80483 1.05511 1.19540 1.03981 1.26897 0.89396 0.91508 1.25861 1.02662 0.96497 0.99475 1.70205 1.28393 1.33093 1.26557 0.85204 0.78376 0.78030 0.78351 1.21256 1.19361 1.21544 1.20749 0.97715 0.91793 0.83828 1.22797 0.85929 0.98022 1.01019 0.93764 0.93287 0.86713 0.74540 0.93107 0.90184 0.88757 0.94914 0.91331 0.92219 0.97884 0.93956 0.98915 0.91913 0.95092 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 10.70 127.77 1.37 2.69 16 2 N -0.72 -13.00 5.71 -484.52 -2.77 -15.77 16 3 C 0.51 14.50 5.87 87.66 0.51 15.02 16 4 O -0.57 -22.01 15.87 -3.03 -0.05 -22.06 16 5 C 0.06 1.69 2.47 44.17 0.11 1.80 16 6 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 7 C -0.14 -3.02 8.74 71.98 0.63 -2.40 16 8 N -0.53 -19.89 4.20 -873.48 -3.67 -23.56 16 9 C 0.06 2.46 5.35 86.39 0.46 2.93 16 10 C 0.15 6.99 6.69 86.35 0.58 7.57 16 11 N -0.61 -33.04 3.03 -697.23 -2.11 -35.15 16 12 C -0.27 -15.37 9.62 84.03 0.81 -14.56 16 13 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 14 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 15 N -0.94 -56.90 11.18 21.65 0.24 -56.66 16 16 Si 0.97 45.45 29.58 68.60 2.03 47.48 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 C 0.19 9.48 5.44 86.50 0.47 9.95 16 21 C 0.05 1.98 5.28 86.54 0.46 2.43 16 22 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.42 4.33 8.83 -92.71 -0.82 3.51 16 26 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.08 1.67 6.17 -2.39 -0.01 1.66 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 2.59 6.47 -2.39 -0.02 2.58 16 31 H 0.06 2.68 7.95 -2.39 -0.02 2.66 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.06 3.50 6.16 -2.38 -0.01 3.49 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 3.14 5.79 -2.39 -0.01 3.13 16 Total: -1.00 -75.36 294.99 -0.27 -75.64 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.24 Total: 7.08 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 5.82 Total: 23.01 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -8.31 Total: -131.15 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.36 -0.27 -75.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.782 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds