Wall clock time and date at job start Mon Mar 30 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46683 * 2 1 4 4 C 1.52999 * 109.47034 * 119.99887 * 2 1 3 5 5 N 1.46894 * 109.47368 * 295.00039 * 4 2 1 6 6 C 1.46905 * 111.00096 * 294.30324 * 5 4 2 7 7 C 1.53242 * 109.33746 * 172.74362 * 6 5 4 8 8 N 1.47076 * 108.52040 * 53.83471 * 7 6 5 9 9 C 1.36937 * 120.88350 * 128.79129 * 8 7 6 10 10 H 1.07997 * 120.00226 * 206.65164 * 9 8 7 11 11 C 1.38810 * 119.99752 * 26.65221 * 9 8 7 12 12 N 1.31623 * 120.00136 * 17.03879 * 11 9 8 13 13 Si 1.86803 * 119.99739 * 197.03570 * 11 9 8 14 14 H 1.48497 * 109.47158 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47105 * 120.00266 * 13 11 9 16 16 H 1.48498 * 109.47085 * 239.99987 * 13 11 9 17 17 C 1.47085 * 118.23761 * 308.80793 * 8 7 6 18 18 C 1.46897 * 111.00110 * 169.99866 * 5 4 2 19 19 C 1.50697 * 109.47279 * 240.00327 * 2 1 3 20 20 N 1.34772 * 120.00387 * 59.99446 * 19 2 1 21 21 O 1.21283 * 119.99929 * 240.00275 * 19 2 1 22 22 H 1.09005 * 109.47583 * 59.99958 * 1 2 3 23 23 H 1.09001 * 109.47195 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47736 * 299.99972 * 1 2 3 25 25 H 1.08994 * 109.47243 * 55.00404 * 4 2 1 26 26 H 1.09005 * 109.46865 * 175.00342 * 4 2 1 27 27 H 1.08992 * 109.49338 * 292.70827 * 6 5 4 28 28 H 1.08999 * 109.49238 * 52.78630 * 6 5 4 29 29 H 1.08998 * 109.62997 * 294.12106 * 7 6 5 30 30 H 1.09003 * 109.78088 * 173.63525 * 7 6 5 31 31 H 0.96997 * 119.99451 * 180.02562 * 12 11 9 32 32 H 1.09004 * 109.62819 * 291.48116 * 17 8 7 33 33 H 1.08992 * 109.78770 * 170.98854 * 17 8 7 34 34 H 1.08990 * 109.49588 * 307.21876 * 18 5 4 35 35 H 1.09004 * 109.48746 * 67.27143 * 18 5 4 36 36 H 0.97003 * 119.99738 * 0.02562 * 20 19 2 37 37 H 0.96997 * 120.00444 * 180.02562 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.3277 1.3409 2.4852 7 6 1.7627 2.1708 3.6430 8 7 1.8649 1.3794 4.8785 9 6 2.4424 1.9043 6.0037 10 1 2.9005 1.2502 6.7308 11 6 2.4391 3.2770 6.2096 12 7 1.6138 4.0428 5.5278 13 14 3.6060 4.0374 7.4545 14 1 4.4234 2.9692 8.0836 15 1 4.4989 5.0058 6.7688 16 1 2.8227 4.7418 8.5011 17 6 1.3305 0.0091 4.8733 18 6 1.9124 -0.7358 3.6671 19 6 2.0323 -0.7103 -1.2305 20 7 1.7067 -0.2499 -2.4545 21 8 2.7296 -1.6964 -1.1192 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6054 -1.7197 1.2952 26 1 3.1263 -0.7994 1.2056 27 1 3.3972 1.1913 2.6328 28 1 2.1599 1.8664 1.5452 29 1 0.7176 2.4096 3.4464 30 1 2.3351 3.0923 3.7500 31 1 1.6119 5.0021 5.6715 32 1 0.2437 0.0401 4.7950 33 1 1.6169 -0.5021 5.7923 34 1 1.4435 -1.7162 3.5842 35 1 2.9877 -0.8568 3.7980 36 1 1.1493 0.5389 -2.5435 37 1 2.0298 -0.7073 -3.2465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:00 Heat of formation + Delta-G solvation = -40.389450 kcal Electronic energy + Delta-G solvation = -18024.961901 eV Core-core repulsion = 15222.563314 eV Total energy + Delta-G solvation = -2802.398587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91227 -39.51450 -36.59678 -34.95535 -34.00108 -32.46867 -31.63187 -28.74052 -26.56826 -25.06402 -24.28408 -23.35265 -20.92146 -20.52216 -18.73373 -18.30437 -17.82788 -16.85730 -16.36307 -16.05905 -15.73019 -15.46432 -15.27107 -14.98469 -14.93050 -14.35569 -13.93968 -13.44133 -13.16125 -13.05290 -12.95444 -12.63921 -12.37839 -12.12351 -12.12060 -11.98469 -11.83392 -11.51027 -11.30297 -10.87067 -10.63467 -10.57927 -9.27632 -8.66679 -7.87168 -5.31039 1.46236 1.48145 1.58650 1.63662 2.48451 2.52403 3.14352 3.28945 3.68295 3.75499 3.96064 4.14889 4.30018 4.36899 4.45240 4.53167 4.60141 4.69555 4.79923 4.84500 4.91412 5.01839 5.04201 5.14188 5.22271 5.38913 5.49286 5.62556 5.71225 5.92395 6.17401 6.22129 6.38861 6.46453 7.14926 7.35978 7.85284 8.39208 9.19858 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043181 B = 0.005320 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.279756 B = 5261.793277 C = 5429.555037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 H 0.108 0.892 4 C 0.078 3.922 5 N -0.528 5.528 6 C 0.047 3.953 7 C 0.187 3.813 8 N -0.615 5.615 9 C -0.265 4.265 10 H 0.065 0.935 11 C -0.048 4.048 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.270 1.270 15 H -0.289 1.289 16 H -0.291 1.291 17 C 0.147 3.853 18 C 0.053 3.947 19 C 0.525 3.475 20 N -0.833 5.833 21 O -0.594 6.594 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.018 0.982 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.005 0.995 30 H 0.057 0.943 31 H 0.251 0.749 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.018 0.982 36 H 0.418 0.582 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -6.278 -14.785 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 H 0.125 0.875 4 C -0.050 4.050 5 N -0.253 5.253 6 C -0.082 4.082 7 C 0.061 3.939 8 N -0.339 5.339 9 C -0.395 4.395 10 H 0.082 0.918 11 C -0.244 4.244 12 N -0.580 5.580 13 Si 0.794 3.206 14 H -0.194 1.194 15 H -0.215 1.215 16 H -0.217 1.217 17 C 0.021 3.979 18 C -0.076 4.076 19 C 0.310 3.690 20 N -0.397 5.397 21 O -0.475 6.475 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.029 0.971 28 H 0.107 0.893 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.250 0.750 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.284 -6.632 -14.525 16.130 hybrid contribution 1.304 0.672 0.515 1.555 sum -0.980 -5.960 -14.010 15.256 Atomic orbital electron populations 1.21615 0.90573 1.02566 1.03633 1.21257 0.99631 1.00781 0.91010 0.87456 1.21803 0.97277 0.96984 0.88973 1.61911 1.57976 1.03541 1.01854 1.22680 0.94688 0.90986 0.99862 1.20631 0.96820 0.93138 0.83344 1.44410 1.68682 1.11850 1.09002 1.19555 1.28708 0.91063 1.00180 0.91765 1.25738 0.99995 0.97631 1.01015 1.70181 1.37710 1.04255 1.45832 0.85228 0.78653 0.78191 0.78493 1.19422 1.21524 1.21747 1.21095 0.95596 0.85389 0.95834 1.22475 0.97890 0.96934 0.90296 1.20765 0.78459 0.83392 0.86404 1.43666 1.55111 1.33919 1.06986 1.90719 1.40299 1.28735 1.87755 0.89974 0.92703 0.91421 0.90530 0.96319 0.97059 0.89323 0.97662 0.92505 0.94000 0.96091 0.92323 0.89043 0.96412 0.75048 0.76053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.98 71.98 0.65 -1.79 16 2 C -0.11 -2.40 2.65 -11.54 -0.03 -2.43 16 3 H 0.11 2.31 6.19 -2.39 -0.01 2.30 16 4 C 0.08 2.31 3.70 86.30 0.32 2.63 16 5 N -0.53 -18.14 4.08 -895.27 -3.66 -21.79 16 6 C 0.05 1.80 5.46 86.38 0.47 2.27 16 7 C 0.19 9.09 5.42 86.35 0.47 9.56 16 8 N -0.62 -31.79 3.04 -698.12 -2.12 -33.91 16 9 C -0.26 -14.89 9.63 84.03 0.81 -14.08 16 10 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 11 C -0.05 -2.72 4.93 84.86 0.42 -2.31 16 12 N -0.93 -55.19 11.16 21.65 0.24 -54.95 16 13 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 17 C 0.15 6.29 6.69 86.35 0.58 6.87 16 18 C 0.05 1.92 5.62 86.38 0.49 2.41 16 19 C 0.52 12.01 7.43 87.66 0.65 12.66 16 20 N -0.83 -10.83 8.77 -173.54 -1.52 -12.35 16 21 O -0.59 -19.21 16.76 -3.04 -0.05 -19.26 16 22 H 0.08 1.04 7.57 -2.38 -0.02 1.02 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 25 H 0.08 2.24 7.97 -2.39 -0.02 2.22 16 26 H 0.02 0.62 7.94 -2.38 -0.02 0.60 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.09 2.86 6.07 -2.39 -0.01 2.85 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 3.10 6.11 -2.39 -0.01 3.09 16 31 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 2.42 7.96 -2.39 -0.02 2.41 16 34 H 0.09 2.77 7.99 -2.39 -0.02 2.75 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.42 2.86 8.25 -92.71 -0.76 2.10 16 37 H 0.41 4.36 8.93 -92.71 -0.83 3.54 16 Total: -1.00 -70.57 294.85 -0.78 -71.35 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -0.52 Total: 7.92 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.82 Total: 15.79 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -7.06 Total: -123.00 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.57 -0.78 -71.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds