Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99916 * 2 1 4 4 H 1.48501 * 109.47437 * 269.99485 * 3 2 1 5 5 H 1.48501 * 109.47590 * 29.99862 * 3 2 1 6 6 H 1.48504 * 109.47170 * 149.99714 * 3 2 1 7 7 C 1.37880 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99625 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46845 * 174.36548 * 9 7 2 11 11 C 1.46898 * 110.99819 * 161.83123 * 10 9 7 12 12 C 1.52994 * 109.47097 * 189.99918 * 11 10 9 13 13 C 1.53002 * 109.47097 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46930 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00213 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99958 * 179.97438 * 14 13 12 17 17 N 1.36596 * 120.00377 * 179.97438 * 16 14 13 18 18 C 1.46897 * 110.99795 * 285.78291 * 10 9 7 19 19 C 1.53001 * 117.49414 * 137.95882 * 18 10 9 20 20 C 1.53002 * 117.49788 * 69.30200 * 18 10 9 21 21 H 0.97000 * 119.99754 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47422 * 54.36076 * 9 7 2 23 23 H 1.09003 * 109.46649 * 294.36448 * 9 7 2 24 24 H 1.09004 * 109.47195 * 70.00022 * 11 10 9 25 25 H 1.09002 * 109.47228 * 310.00234 * 11 10 9 26 26 H 1.09002 * 109.47339 * 300.00248 * 12 11 10 27 27 H 1.08996 * 109.47604 * 60.00238 * 12 11 10 28 28 H 1.08997 * 109.47275 * 299.99512 * 13 12 11 29 29 H 1.08991 * 109.47202 * 60.00212 * 13 12 11 30 30 H 0.97008 * 119.99920 * 0.02562 * 16 14 13 31 31 H 1.00895 * 111.00597 * 179.97438 * 17 16 14 32 32 H 1.00903 * 111.00150 * 303.96071 * 17 16 14 33 33 H 1.08992 * 115.55133 * 283.62895 * 18 10 9 34 34 H 1.09000 * 117.50060 * 0.02562 * 19 18 10 35 35 H 1.09006 * 117.49489 * 145.02531 * 19 18 10 36 36 H 1.08997 * 117.50274 * 214.97895 * 20 18 10 37 37 H 1.08998 * 117.49670 * 359.97357 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.1999 -3.6124 -0.1348 11 6 1.5875 -4.8800 0.2847 12 6 2.6645 -5.9635 0.3687 13 6 2.0265 -7.2839 0.8050 14 6 3.0875 -8.3510 0.8884 15 8 4.2402 -8.0820 0.6243 16 7 2.7553 -9.6043 1.2564 17 7 3.7168 -10.5717 1.3315 18 6 2.7112 -3.7041 -1.5089 19 6 4.2043 -3.9852 -1.6897 20 6 3.6454 -2.5923 -1.9907 21 1 -0.4850 0.8401 -0.0004 22 1 0.5511 -2.5146 -0.8349 23 1 0.7019 -2.6015 0.9365 24 1 0.8305 -5.1758 -0.4417 25 1 1.1228 -4.7530 1.2625 26 1 3.1292 -6.0905 -0.6091 27 1 3.4215 -5.6679 1.0950 28 1 1.5616 -7.1573 1.7827 29 1 1.2698 -7.5794 0.0784 30 1 1.8332 -9.8196 1.4673 31 1 3.3205 -11.4539 1.6188 32 1 4.2066 -10.6635 0.4541 33 1 2.0258 -4.1365 -2.2377 34 1 4.8070 -4.1025 -0.7891 35 1 4.5011 -4.6023 -2.5378 36 1 3.5749 -2.2935 -3.0365 37 1 3.8803 -1.7926 -1.2882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082469939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = 14.082134 kcal Electronic energy + Delta-G solvation = -17308.263070 eV Core-core repulsion = 14508.226548 eV Total energy + Delta-G solvation = -2800.036522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84716 -37.76736 -35.93788 -34.20064 -33.06932 -31.73797 -29.58834 -27.25001 -24.96226 -22.19192 -21.63742 -21.47871 -20.53486 -19.34495 -18.04463 -17.09984 -16.40847 -15.92821 -15.11692 -14.84525 -14.62510 -14.38529 -14.07039 -13.42788 -13.28794 -12.51341 -12.09506 -11.77598 -11.63780 -11.39707 -11.29133 -10.96755 -10.78031 -10.62559 -10.60693 -10.34528 -9.94673 -9.80571 -9.43582 -9.04065 -9.02067 -8.38697 -8.35227 -7.21675 -5.96784 -3.96062 2.61910 2.69985 3.35417 3.41653 3.46080 4.44873 4.58368 4.69631 4.79813 4.81913 5.18314 5.23968 5.38837 5.66103 5.76259 5.79355 5.84705 5.89965 6.16730 6.23462 6.32175 6.34925 6.45720 6.60805 6.76427 6.83089 7.11267 7.11837 7.27635 7.33848 7.44292 7.92481 8.17717 8.27633 8.35824 8.61853 9.10670 9.66538 11.14033 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042677 B = 0.004530 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.939106 B = 6179.636046 C = 6526.093662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.195 3.805 10 N -0.510 5.510 11 C 0.061 3.939 12 C -0.097 4.097 13 C -0.133 4.133 14 C 0.514 3.486 15 O -0.523 6.523 16 N -0.588 5.588 17 N -0.606 5.606 18 C 0.027 3.973 19 C -0.183 4.183 20 C -0.158 4.158 21 H 0.259 0.741 22 H -0.004 1.004 23 H 0.024 0.976 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.353 0.647 32 H 0.344 0.656 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -18.057 -0.146 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.535 4.535 8 H 0.087 0.913 9 C 0.070 3.930 10 N -0.235 5.235 11 C -0.068 4.068 12 C -0.136 4.136 13 C -0.175 4.175 14 C 0.300 3.700 15 O -0.396 6.396 16 N -0.335 5.335 17 N -0.232 5.232 18 C -0.083 4.083 19 C -0.221 4.221 20 C -0.195 4.195 21 H 0.069 0.931 22 H 0.014 0.986 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.237 0.763 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.038 -17.144 0.536 17.420 hybrid contribution -1.450 -0.121 -1.196 1.883 sum 1.588 -17.266 -0.660 17.351 Atomic orbital electron populations 1.69958 1.06038 1.26573 1.51675 1.24980 0.94824 0.99179 0.95777 0.86564 0.79884 0.83381 0.78023 1.20770 1.21396 1.19747 1.21275 0.93598 0.89696 1.48958 0.91311 1.19716 0.89855 0.87468 0.95935 1.61866 1.39165 1.03076 1.19382 1.22010 0.94533 0.90504 0.99767 1.21347 0.98497 0.90677 1.03055 1.21649 0.97179 0.94598 1.04057 1.20932 0.90762 0.81653 0.76614 1.90724 1.20656 1.80297 1.47905 1.44926 1.08353 1.07704 1.72507 1.59932 1.20079 1.06473 1.36689 1.22024 0.91241 1.04022 0.90977 1.23036 0.96891 1.00011 1.02141 1.23161 1.02537 0.92804 1.01010 0.93093 0.98568 0.95751 0.96182 0.91376 0.91083 0.90588 0.88676 0.89215 0.76343 0.83367 0.84082 0.91623 0.88844 0.90422 0.90357 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.50 -13.81 7.82 -34.44 -0.27 -14.08 16 8 H 0.07 1.90 5.55 -52.49 -0.29 1.60 16 9 C 0.19 5.06 4.75 -4.97 -0.02 5.04 16 10 N -0.51 -11.08 4.58 -228.09 -1.05 -12.13 16 11 C 0.06 1.06 4.95 -3.83 -0.02 1.04 16 12 C -0.10 -1.49 4.32 -26.73 -0.12 -1.60 16 13 C -0.13 -1.46 5.70 -27.88 -0.16 -1.62 16 14 C 0.51 6.47 7.90 -10.98 -0.09 6.39 16 15 O -0.52 -9.04 16.20 5.56 0.09 -8.95 16 16 N -0.59 -5.19 6.47 31.22 0.20 -4.99 16 17 N -0.61 -5.08 10.03 60.35 0.61 -4.47 16 18 C 0.03 0.54 4.20 -67.71 -0.28 0.25 16 19 C -0.18 -3.27 9.31 -26.69 -0.25 -3.52 16 20 C -0.16 -3.16 9.41 -26.69 -0.25 -3.41 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.00 -0.10 8.02 -51.93 -0.42 -0.52 16 23 H 0.02 0.67 7.76 -51.93 -0.40 0.26 16 24 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 25 H 0.07 1.17 7.84 -51.93 -0.41 0.77 16 26 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 27 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.40 2.08 8.83 -185.15 -1.64 0.45 16 31 H 0.35 1.59 9.21 -181.37 -1.67 -0.08 16 32 H 0.34 2.90 9.00 -181.36 -1.63 1.27 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.12 2.63 5.32 -51.93 -0.28 2.35 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -33.97 306.72 -10.95 -44.92 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.59 Total: 0.48 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.55 Total: -10.11 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.50 Total: -47.67 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.97 -10.95 -44.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082469939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.000 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds