Wall clock time and date at job start Mon Mar 30 2020 03:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.48950 * 2 1 4 4 C 1.53047 * 109.49127 * 239.92931 * 2 1 3 5 5 N 1.46949 * 109.36761 * 181.63018 * 4 2 1 6 6 C 1.46899 * 111.00284 * 183.19105 * 5 4 2 7 7 C 1.50700 * 109.47378 * 169.86843 * 6 5 4 8 8 O 1.21294 * 119.99855 * 353.86467 * 7 6 5 9 9 N 1.34775 * 120.00145 * 173.86344 * 7 6 5 10 10 C 1.37104 * 119.99798 * 179.97438 * 9 7 6 11 11 H 1.07992 * 120.00331 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99621 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00491 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99999 * 179.72547 * 12 10 9 15 15 H 1.48503 * 109.47501 * 89.99617 * 14 12 10 16 16 H 1.48503 * 109.47417 * 209.99773 * 14 12 10 17 17 H 1.48502 * 109.46881 * 329.99836 * 14 12 10 18 18 C 1.46957 * 110.88066 * 59.32278 * 5 4 2 19 19 H 1.08997 * 109.49040 * 180.71484 * 18 5 4 20 20 C 1.53001 * 109.49063 * 60.66719 * 18 5 4 21 21 C 1.53057 * 109.36140 * 300.68109 * 18 5 4 22 22 N 1.46949 * 109.36729 * 58.40107 * 21 18 5 23 23 H 1.09003 * 109.46841 * 299.95952 * 1 2 3 24 24 H 1.08998 * 109.46934 * 59.96202 * 1 2 3 25 25 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.48608 * 61.66392 * 4 2 1 27 27 H 1.09000 * 109.48932 * 301.60505 * 4 2 1 28 28 H 1.08992 * 109.47058 * 49.86719 * 6 5 4 29 29 H 1.09001 * 109.46830 * 289.86484 * 6 5 4 30 30 H 0.96997 * 119.99864 * 0.02562 * 9 7 6 31 31 H 0.96997 * 120.00652 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46795 * 60.00206 * 20 18 5 33 33 H 1.08998 * 109.47233 * 180.02562 * 20 18 5 34 34 H 1.08996 * 109.47049 * 300.00639 * 20 18 5 35 35 H 1.09009 * 109.48656 * 178.36741 * 21 18 5 36 36 H 1.08997 * 109.48738 * 298.40899 * 21 18 5 37 37 H 1.00907 * 111.00048 * 64.54490 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7229 -1.2486 5 7 3.5096 -0.7556 -1.2262 6 6 4.0411 -1.3757 -2.4472 7 6 5.5329 -1.1705 -2.5065 8 8 6.0825 -0.4736 -1.6798 9 7 6.2563 -1.7613 -3.4782 10 6 7.6135 -1.5741 -3.5324 11 1 8.1028 -0.9536 -2.7963 12 6 8.3592 -2.1827 -4.5345 13 7 7.7638 -2.9382 -5.4299 14 14 10.2071 -1.9216 -4.6130 15 1 10.8897 -2.9692 -3.8118 16 1 10.6594 -2.0051 -6.0250 17 1 10.5415 -0.5827 -4.0644 18 6 4.0000 -1.4491 -0.0270 19 1 5.0899 -1.4490 -0.0269 20 6 3.4895 -2.8914 -0.0268 21 6 3.4893 -0.7261 1.2217 22 7 2.0203 -0.6935 1.1994 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5144 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7022 -0.1935 -2.1393 27 1 1.6544 -1.7421 -1.2622 28 1 3.5763 -0.9168 -3.3197 29 1 3.8214 -2.4433 -2.4377 30 1 5.8167 -2.3182 -4.1395 31 1 8.2843 -3.3628 -6.1296 32 1 3.8521 -3.4052 -0.9172 33 1 3.8530 -3.4054 0.8630 34 1 2.3996 -2.8911 -0.0261 35 1 3.8278 -1.2556 2.1124 36 1 3.8758 0.2929 1.2355 37 1 1.6369 -1.6249 1.2606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083125709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:16 Heat of formation + Delta-G solvation = -28.191528 kcal Electronic energy + Delta-G solvation = -18106.709395 eV Core-core repulsion = 15304.839749 eV Total energy + Delta-G solvation = -2801.869645 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92187 -37.84681 -34.61143 -33.72065 -32.66020 -31.20379 -28.98752 -27.65006 -25.78499 -24.80302 -23.22019 -21.68824 -19.46921 -18.80092 -17.79531 -16.12543 -15.79415 -15.31927 -14.99791 -14.85157 -14.51744 -14.01249 -13.75356 -13.54609 -13.26804 -12.90058 -12.37972 -12.11441 -11.84353 -11.69696 -11.50384 -11.44020 -11.37014 -11.07152 -10.90895 -10.81379 -10.42011 -10.36649 -10.21608 -9.46937 -8.61932 -8.18093 -7.95310 -7.80611 -6.41291 -3.82113 3.17815 3.26430 3.32523 3.91530 3.93653 4.22413 4.29975 4.91841 5.00279 5.13514 5.17216 5.25784 5.27832 5.32349 5.48651 5.58604 5.60996 5.65364 5.71537 5.78400 5.88522 5.95269 6.03399 6.12452 6.16088 6.28515 6.33665 6.49161 7.05515 7.26084 7.43799 7.45808 7.55528 8.07127 8.62666 9.18806 9.55298 10.07396 10.76571 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050256 B = 0.005186 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.014593 B = 5397.437497 C = 5554.125671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.089 0.911 4 C 0.018 3.982 5 N -0.504 5.504 6 C 0.042 3.958 7 C 0.445 3.555 8 O -0.576 6.576 9 N -0.566 5.566 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.039 3.961 19 H 0.110 0.890 20 C -0.189 4.189 21 C 0.068 3.932 22 N -0.683 5.683 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.391 0.609 31 H 0.271 0.729 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 0.325 7.529 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.107 0.893 4 C -0.111 4.111 5 N -0.227 5.227 6 C -0.089 4.089 7 C 0.230 3.770 8 O -0.460 6.460 9 N -0.203 5.203 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.071 4.071 19 H 0.128 0.872 20 C -0.248 4.248 21 C -0.061 4.061 22 N -0.312 5.312 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.039 1.766 8.350 14.757 hybrid contribution 0.571 -1.932 -1.500 2.511 sum -11.468 -0.166 6.850 13.359 Atomic orbital electron populations 1.21779 0.94402 1.01727 1.02182 1.21609 0.94410 0.99219 0.87195 0.89282 1.22906 0.88866 0.99189 1.00187 1.61911 1.06160 1.53318 1.01301 1.21917 0.95927 0.97757 0.93316 1.19732 0.87660 0.84971 0.84624 1.90498 1.72070 1.41971 1.41448 1.41881 1.07898 1.44107 1.26373 1.19695 0.82123 1.28516 1.12431 0.87935 1.25251 1.00631 0.96433 0.95622 1.69611 1.36823 1.32081 1.15942 0.85866 0.82188 0.78982 0.77301 1.20446 1.20932 1.19393 1.22546 1.03084 0.90396 0.91054 0.87178 1.22475 1.00650 0.99001 1.02652 1.22056 0.86755 1.01683 0.95638 1.60883 1.08181 1.22905 1.39219 0.91720 0.92065 0.93067 0.90622 0.94990 0.89534 0.93362 0.77580 0.91906 0.92161 0.92022 0.93171 0.90620 0.89908 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.45 37.16 0.35 -0.97 16 2 C 0.09 1.03 3.20 -67.65 -0.22 0.82 16 3 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.02 0.25 4.50 -3.77 -0.02 0.23 16 5 N -0.50 -8.52 4.35 -227.93 -0.99 -9.51 16 6 C 0.04 0.77 5.26 -4.98 -0.03 0.75 16 7 C 0.44 10.59 7.35 -10.99 -0.08 10.51 16 8 O -0.58 -15.60 14.25 5.55 0.08 -15.52 16 9 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 C 0.04 0.63 2.63 -67.65 -0.18 0.46 16 19 H 0.11 2.21 6.08 -51.93 -0.32 1.90 16 20 C -0.19 -2.61 8.23 37.16 0.31 -2.30 16 21 C 0.07 0.95 6.21 -3.77 -0.02 0.93 16 22 N -0.68 -8.32 6.48 -106.58 -0.69 -9.01 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.96 8.07 -51.92 -0.42 0.54 16 27 H 0.03 0.41 6.35 -51.93 -0.33 0.08 16 28 H 0.09 1.47 8.02 -51.93 -0.42 1.05 16 29 H 0.05 0.82 6.10 -51.93 -0.32 0.51 16 30 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.06 0.92 6.35 -51.93 -0.33 0.59 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.61 5.10 -51.93 -0.26 0.35 16 35 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.33 3.70 7.18 -39.29 -0.28 3.42 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -30.14 289.91 -7.18 -37.32 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.47 Total: 12.30 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.13 Total: 2.41 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -1.02 Total: -57.01 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.14 -7.18 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.132 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds