Wall clock time and date at job start Mon Mar 30 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.48950 * 2 1 4 4 C 1.53047 * 109.49127 * 239.92931 * 2 1 3 5 5 N 1.46949 * 109.36761 * 181.63018 * 4 2 1 6 6 C 1.46899 * 111.00284 * 183.19105 * 5 4 2 7 7 C 1.50700 * 109.47378 * 169.86843 * 6 5 4 8 8 O 1.21294 * 119.99855 * 353.86467 * 7 6 5 9 9 N 1.34775 * 120.00145 * 173.86344 * 7 6 5 10 10 C 1.37104 * 119.99798 * 179.97438 * 9 7 6 11 11 H 1.07992 * 120.00331 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99621 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00491 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99999 * 179.72547 * 12 10 9 15 15 H 1.48503 * 109.47501 * 89.99617 * 14 12 10 16 16 H 1.48503 * 109.47417 * 209.99773 * 14 12 10 17 17 H 1.48502 * 109.46881 * 329.99836 * 14 12 10 18 18 C 1.46957 * 110.88066 * 59.32278 * 5 4 2 19 19 H 1.08997 * 109.49040 * 180.71484 * 18 5 4 20 20 C 1.53001 * 109.49063 * 60.66719 * 18 5 4 21 21 C 1.53057 * 109.36140 * 300.68109 * 18 5 4 22 22 N 1.46949 * 109.36729 * 58.40107 * 21 18 5 23 23 H 1.09003 * 109.46841 * 299.95952 * 1 2 3 24 24 H 1.08998 * 109.46934 * 59.96202 * 1 2 3 25 25 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.48608 * 61.66392 * 4 2 1 27 27 H 1.09000 * 109.48932 * 301.60505 * 4 2 1 28 28 H 1.08992 * 109.47058 * 49.86719 * 6 5 4 29 29 H 1.09001 * 109.46830 * 289.86484 * 6 5 4 30 30 H 0.96997 * 119.99864 * 0.02562 * 9 7 6 31 31 H 0.96997 * 120.00652 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46795 * 60.00206 * 20 18 5 33 33 H 1.08998 * 109.47233 * 180.02562 * 20 18 5 34 34 H 1.08996 * 109.47049 * 300.00639 * 20 18 5 35 35 H 1.09009 * 109.48656 * 178.36741 * 21 18 5 36 36 H 1.08997 * 109.48738 * 298.40899 * 21 18 5 37 37 H 1.00907 * 111.00048 * 64.54490 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7229 -1.2486 5 7 3.5096 -0.7556 -1.2262 6 6 4.0411 -1.3757 -2.4472 7 6 5.5329 -1.1705 -2.5065 8 8 6.0825 -0.4736 -1.6798 9 7 6.2563 -1.7613 -3.4782 10 6 7.6135 -1.5741 -3.5324 11 1 8.1028 -0.9536 -2.7963 12 6 8.3592 -2.1827 -4.5345 13 7 7.7638 -2.9382 -5.4299 14 14 10.2071 -1.9216 -4.6130 15 1 10.8897 -2.9692 -3.8118 16 1 10.6594 -2.0051 -6.0250 17 1 10.5415 -0.5827 -4.0644 18 6 4.0000 -1.4491 -0.0270 19 1 5.0899 -1.4490 -0.0269 20 6 3.4895 -2.8914 -0.0268 21 6 3.4893 -0.7261 1.2217 22 7 2.0203 -0.6935 1.1994 23 1 -0.3633 0.5132 0.8904 24 1 -0.3633 0.5144 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7022 -0.1935 -2.1393 27 1 1.6544 -1.7421 -1.2622 28 1 3.5763 -0.9168 -3.3197 29 1 3.8214 -2.4433 -2.4377 30 1 5.8167 -2.3182 -4.1395 31 1 8.2843 -3.3628 -6.1296 32 1 3.8521 -3.4052 -0.9172 33 1 3.8530 -3.4054 0.8630 34 1 2.3996 -2.8911 -0.0261 35 1 3.8278 -1.2556 2.1124 36 1 3.8758 0.2929 1.2355 37 1 1.6369 -1.6249 1.2606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083125709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:15 Heat of formation + Delta-G solvation = -52.299220 kcal Electronic energy + Delta-G solvation = -18107.754783 eV Core-core repulsion = 15304.839749 eV Total energy + Delta-G solvation = -2802.915033 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22024 -39.62584 -36.15704 -35.43517 -33.78702 -33.24091 -30.12051 -29.06179 -26.86021 -26.60223 -24.55715 -22.80305 -21.07812 -20.27692 -19.74927 -17.77905 -17.14085 -16.73367 -16.54920 -16.01295 -15.88346 -15.71512 -15.24678 -15.02201 -14.47118 -14.21330 -13.97329 -13.50701 -13.11488 -12.96538 -12.87965 -12.76203 -12.60880 -12.43477 -12.42925 -12.13163 -12.03288 -11.88962 -11.63700 -11.39575 -10.35826 -10.02352 -9.44442 -9.07469 -8.47967 -5.96873 1.36485 1.40230 1.53150 2.03626 2.26958 2.70123 3.18437 3.28788 3.34919 3.90639 4.00045 4.05698 4.17525 4.21966 4.29090 4.40519 4.49448 4.50422 4.61132 4.64295 4.71446 4.77842 4.93335 5.00831 5.06644 5.18692 5.32974 5.36620 5.39439 5.86401 5.98800 6.06768 6.25019 6.52371 6.59207 7.11599 7.54632 8.10808 8.69582 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050256 B = 0.005186 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.014593 B = 5397.437497 C = 5554.125671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.020 3.980 5 N -0.526 5.526 6 C 0.055 3.945 7 C 0.442 3.558 8 O -0.613 6.613 9 N -0.575 5.575 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.922 5.922 14 Si 0.993 3.007 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.273 1.273 18 C 0.039 3.961 19 H 0.062 0.938 20 C -0.179 4.179 21 C 0.077 3.923 22 N -0.675 5.675 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.395 0.605 31 H 0.278 0.722 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 -0.342 7.625 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.088 0.912 4 C -0.108 4.108 5 N -0.250 5.250 6 C -0.076 4.076 7 C 0.230 3.770 8 O -0.499 6.499 9 N -0.213 5.213 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.071 4.071 19 H 0.080 0.920 20 C -0.238 4.238 21 C -0.053 4.053 22 N -0.305 5.305 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.593 1.082 8.443 16.038 hybrid contribution 1.008 -1.691 -1.496 2.472 sum -12.585 -0.609 6.947 14.388 Atomic orbital electron populations 1.21713 0.91756 1.02765 1.02950 1.21638 0.96329 0.97944 0.86416 0.91195 1.23011 0.86219 1.00316 1.01304 1.61864 1.08635 1.53740 1.00742 1.21765 0.91651 0.99176 0.95016 1.20733 0.89962 0.83280 0.83061 1.90473 1.73607 1.43299 1.42553 1.41944 1.07433 1.44768 1.27116 1.19647 0.83642 1.29813 1.13096 0.90413 1.26027 1.04788 0.95623 0.94744 1.69671 1.38410 1.32086 1.16103 0.84934 0.76875 0.78672 0.77892 1.19582 1.19471 1.19831 1.22441 1.00445 0.92391 0.91870 0.91958 1.22367 1.01916 0.96990 1.02496 1.21915 0.87948 1.00241 0.95179 1.60863 1.06697 1.23646 1.39321 0.91367 0.90965 0.91841 0.89784 0.93515 0.87724 0.91665 0.77169 0.91299 0.93765 0.90760 0.90886 0.89031 0.92186 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.45 71.98 0.68 -1.36 16 2 C 0.09 1.91 3.20 44.92 0.14 2.05 16 3 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.02 0.50 4.50 86.31 0.39 0.89 16 5 N -0.53 -17.47 4.35 -875.04 -3.81 -21.28 16 6 C 0.06 1.99 5.26 85.56 0.45 2.44 16 7 C 0.44 21.64 7.35 87.66 0.64 22.29 16 8 O -0.61 -34.69 14.25 -3.07 -0.04 -34.74 16 9 N -0.58 -30.16 5.29 -306.99 -1.62 -31.78 16 10 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 14 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C 0.04 1.25 2.63 44.92 0.12 1.37 16 19 H 0.06 2.62 6.08 -2.39 -0.01 2.60 16 20 C -0.18 -4.65 8.23 71.98 0.59 -4.06 16 21 C 0.08 2.11 6.21 86.31 0.54 2.64 16 22 N -0.68 -14.99 6.48 -491.12 -3.18 -18.17 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 1.91 8.07 -2.38 -0.02 1.90 16 27 H 0.05 1.02 6.35 -2.39 -0.02 1.00 16 28 H 0.10 3.40 8.02 -2.39 -0.02 3.38 16 29 H 0.07 2.15 6.10 -2.39 -0.01 2.14 16 30 H 0.39 19.71 7.90 -92.71 -0.73 18.98 16 31 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.04 1.29 6.35 -2.39 -0.02 1.27 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.55 5.10 -2.39 -0.01 1.54 16 35 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.34 6.50 7.18 -89.69 -0.64 5.85 16 Total: -1.00 -66.41 289.91 -1.81 -68.22 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.29 Total: 34.60 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.83 Total: 7.70 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -8.33 Total: -121.19 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.04 Total: -34.74 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.41 -1.81 -68.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083125709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.919 kcal (2) G-P(sol) polarization free energy of solvation -66.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds