Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99875 * 2 1 4 4 H 1.07999 * 120.00066 * 206.86426 * 3 2 1 5 5 C 1.38813 * 120.00012 * 26.86715 * 3 2 1 6 6 N 1.31624 * 120.00011 * 8.99111 * 5 3 2 7 7 Si 1.86798 * 120.00261 * 188.99106 * 5 3 2 8 8 H 1.48503 * 109.46986 * 60.00198 * 7 5 3 9 9 H 1.48501 * 109.47315 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47282 * 300.00443 * 7 5 3 11 11 C 1.46495 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47227 * 68.44080 * 11 2 1 13 13 C 1.50709 * 109.47170 * 56.68807 * 12 11 2 14 14 O 1.20830 * 119.99768 * 356.57107 * 13 12 11 15 15 O 1.34222 * 120.00085 * 176.56598 * 13 12 11 16 16 C 1.53003 * 109.47022 * 188.43653 * 11 2 1 17 17 C 1.53002 * 109.47075 * 60.00370 * 16 11 2 18 18 C 1.52999 * 109.47132 * 59.99685 * 17 16 11 19 19 C 1.53003 * 109.47398 * 300.00117 * 18 17 16 20 20 C 1.52999 * 109.47212 * 308.43985 * 11 2 1 21 21 H 1.09004 * 109.47188 * 265.97002 * 1 2 3 22 22 H 1.09006 * 109.47398 * 25.97202 * 1 2 3 23 23 H 1.08999 * 109.47148 * 145.96911 * 1 2 3 24 24 H 0.97003 * 120.00235 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.46847 * 296.69553 * 12 11 2 26 26 H 1.08995 * 109.47351 * 176.68852 * 12 11 2 27 27 H 0.96700 * 116.99962 * 180.02562 * 15 13 12 28 28 H 1.08999 * 109.47181 * 180.02562 * 16 11 2 29 29 H 1.08996 * 109.47505 * 300.00512 * 16 11 2 30 30 H 1.08999 * 109.47083 * 300.00019 * 17 16 11 31 31 H 1.08995 * 109.47132 * 180.02562 * 17 16 11 32 32 H 1.09006 * 109.47372 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.46864 * 60.00200 * 18 17 16 34 34 H 1.09001 * 109.46919 * 300.00362 * 19 18 17 35 35 H 1.08996 * 109.47505 * 179.97438 * 19 18 17 36 36 H 1.08990 * 109.47030 * 60.00107 * 20 11 2 37 37 H 1.09007 * 109.46791 * 180.02562 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1422 1.2364 -0.4226 5 6 1.5680 2.3232 0.5433 6 7 0.4395 2.2288 1.2142 7 14 2.3866 3.9876 0.3223 8 1 2.4954 4.2973 -1.1260 9 1 1.5715 5.0330 0.9916 10 1 3.7435 3.9559 0.9249 11 6 2.1975 -1.2687 0.0006 12 6 1.9935 -1.9760 -1.3407 13 6 2.4322 -1.0670 -2.4599 14 8 2.8055 0.0558 -2.2151 15 8 2.4085 -1.5048 -3.7285 16 6 3.6882 -0.9968 0.2121 17 6 3.8923 -0.2895 1.5534 18 6 3.3707 -1.1791 2.6836 19 6 1.8800 -1.4510 2.4721 20 6 1.6759 -2.1583 1.1308 21 1 -0.3634 -0.0722 1.0252 22 1 -0.3634 0.9239 -0.4501 23 1 -0.3633 -0.8516 -0.5751 24 1 0.0332 3.0234 1.5942 25 1 0.9389 -2.2221 -1.4649 26 1 2.5852 -2.8911 -1.3626 27 1 2.6995 -0.8858 -4.4120 28 1 4.2333 -1.9407 0.2121 29 1 4.0598 -0.3630 -0.5931 30 1 3.3473 0.6545 1.5530 31 1 4.9543 -0.0954 1.7039 32 1 3.5157 -0.6750 3.6392 33 1 3.9158 -2.1230 2.6840 34 1 1.3350 -0.5070 2.4716 35 1 1.5085 -2.0851 3.2770 36 1 0.6140 -2.3519 0.9801 37 1 2.2213 -3.1021 1.1315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083632470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -68.594036 kcal Electronic energy + Delta-G solvation = -19547.800066 eV Core-core repulsion = 16711.885685 eV Total energy + Delta-G solvation = -2835.914381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92469 -38.23075 -35.32560 -33.84403 -32.14494 -30.19104 -29.56522 -26.96946 -25.38505 -22.91382 -21.91877 -21.36027 -19.66929 -18.08352 -17.26491 -16.23621 -15.82809 -15.24616 -14.96185 -14.19904 -13.73250 -13.47832 -13.11603 -12.63397 -12.41085 -12.23054 -11.80187 -11.45719 -11.25510 -11.10531 -10.91850 -10.74317 -10.67195 -10.64116 -10.32398 -10.13801 -9.90796 -9.84822 -9.59664 -9.40290 -9.10354 -8.95875 -8.17716 -6.48346 -5.55038 -2.95294 3.05213 3.49854 3.54633 3.57942 3.72362 4.64145 5.31025 5.43452 5.51775 5.69847 5.75104 5.83781 5.94649 6.04024 6.12311 6.21820 6.35592 6.44618 6.46852 6.48032 6.59221 6.63015 6.77872 6.86133 7.08414 7.12104 7.16009 7.29174 7.39606 7.49216 7.74782 7.81837 8.13440 8.63364 8.71558 9.45526 10.05017 10.56620 11.52344 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.013567 C = 0.010243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.017503 B = 2063.369491 C = 2732.815647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.576 5.576 3 C -0.201 4.201 4 H 0.080 0.920 5 C -0.011 4.011 6 N -0.917 5.917 7 Si 0.895 3.105 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.285 1.285 11 C 0.212 3.788 12 C -0.124 4.124 13 C 0.461 3.539 14 O -0.459 6.459 15 O -0.540 6.540 16 C -0.104 4.104 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.117 4.117 21 H 0.021 0.979 22 H 0.053 0.947 23 H -0.014 1.014 24 H 0.248 0.752 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.397 0.603 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -9.163 -3.029 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.298 5.298 3 C -0.331 4.331 4 H 0.097 0.903 5 C -0.207 4.207 6 N -0.564 5.564 7 Si 0.727 3.273 8 H -0.215 1.215 9 H -0.221 1.221 10 H -0.212 1.212 11 C 0.121 3.879 12 C -0.164 4.164 13 C 0.301 3.699 14 O -0.342 6.342 15 O -0.353 6.353 16 C -0.141 4.141 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.156 4.156 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.004 0.996 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.241 -8.937 -2.544 9.841 hybrid contribution 0.430 1.262 -0.604 1.463 sum 3.671 -7.675 -3.148 9.072 Atomic orbital electron populations 1.20738 0.83231 0.96595 0.97592 1.43805 1.00993 0.99886 1.85075 1.19177 1.00700 0.85301 1.27950 0.90253 1.25040 0.98290 0.98185 0.99162 1.70013 1.19860 1.27409 1.39103 0.86456 0.78601 0.84770 0.77497 1.21519 1.22148 1.21196 1.19490 0.92709 0.87243 0.88438 1.22096 1.02757 0.97850 0.93716 1.23585 0.75981 0.88020 0.82283 1.90860 1.40699 1.19553 1.83101 1.84553 1.81692 1.50256 1.18785 1.21625 0.94603 0.98623 0.99281 1.21884 0.99086 1.02902 0.92977 1.21403 0.96312 0.98303 0.98369 1.21404 0.96605 1.01879 0.94892 1.21874 1.00033 0.97277 0.96457 0.96110 0.92796 0.99609 0.94201 0.89008 0.89613 0.74595 0.94543 0.90578 0.86401 0.94776 0.93524 0.94332 0.89076 0.94413 0.92815 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.65 59.85 0.46 4.35 16 2 N -0.58 -13.47 1.34 -166.15 -0.22 -13.69 16 3 C -0.20 -5.26 4.39 -15.06 -0.07 -5.33 16 4 H 0.08 2.15 4.95 -52.49 -0.26 1.89 16 5 C -0.01 -0.30 5.05 -17.43 -0.09 -0.39 16 6 N -0.92 -26.16 10.79 55.49 0.60 -25.56 16 7 Si 0.90 22.50 29.56 -169.99 -5.03 17.47 16 8 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.21 4.11 0.36 -131.82 -0.05 4.06 16 12 C -0.12 -2.10 4.79 -27.88 -0.13 -2.23 16 13 C 0.46 8.42 7.83 36.01 0.28 8.70 16 14 O -0.46 -10.12 11.59 -18.75 -0.22 -10.33 16 15 O -0.54 -8.00 13.42 -39.24 -0.53 -8.53 16 16 C -0.10 -2.01 3.97 -26.73 -0.11 -2.11 16 17 C -0.13 -2.64 5.48 -26.73 -0.15 -2.79 16 18 C -0.11 -1.92 5.92 -26.73 -0.16 -2.08 16 19 C -0.11 -2.09 5.77 -26.73 -0.15 -2.24 16 20 C -0.12 -2.08 4.46 -26.73 -0.12 -2.20 16 21 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 22 H 0.05 1.44 6.88 -51.93 -0.36 1.08 16 23 H -0.01 -0.31 6.95 -51.93 -0.36 -0.67 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.09 1.50 7.14 -51.93 -0.37 1.13 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.40 4.33 9.10 45.56 0.41 4.74 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.62 4.90 -51.93 -0.25 1.36 16 30 H 0.12 2.85 5.02 -51.93 -0.26 2.59 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.11 7.04 -51.93 -0.37 1.75 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -29.71 275.77 -6.19 -35.91 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.68 Total: 2.84 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.28 Total: -2.26 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.38 Total: -39.25 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.74 Total: -18.86 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.71 -6.19 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.689 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds