Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99875 * 2 1 4 4 H 1.07999 * 120.00066 * 206.86426 * 3 2 1 5 5 C 1.38813 * 120.00012 * 26.86715 * 3 2 1 6 6 N 1.31624 * 120.00011 * 8.99111 * 5 3 2 7 7 Si 1.86798 * 120.00261 * 188.99106 * 5 3 2 8 8 H 1.48503 * 109.46986 * 60.00198 * 7 5 3 9 9 H 1.48501 * 109.47315 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47282 * 300.00443 * 7 5 3 11 11 C 1.46495 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47227 * 68.44080 * 11 2 1 13 13 C 1.50709 * 109.47170 * 56.68807 * 12 11 2 14 14 O 1.20830 * 119.99768 * 356.57107 * 13 12 11 15 15 O 1.34222 * 120.00085 * 176.56598 * 13 12 11 16 16 C 1.53003 * 109.47022 * 188.43653 * 11 2 1 17 17 C 1.53002 * 109.47075 * 60.00370 * 16 11 2 18 18 C 1.52999 * 109.47132 * 59.99685 * 17 16 11 19 19 C 1.53003 * 109.47398 * 300.00117 * 18 17 16 20 20 C 1.52999 * 109.47212 * 308.43985 * 11 2 1 21 21 H 1.09004 * 109.47188 * 265.97002 * 1 2 3 22 22 H 1.09006 * 109.47398 * 25.97202 * 1 2 3 23 23 H 1.08999 * 109.47148 * 145.96911 * 1 2 3 24 24 H 0.97003 * 120.00235 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.46847 * 296.69553 * 12 11 2 26 26 H 1.08995 * 109.47351 * 176.68852 * 12 11 2 27 27 H 0.96700 * 116.99962 * 180.02562 * 15 13 12 28 28 H 1.08999 * 109.47181 * 180.02562 * 16 11 2 29 29 H 1.08996 * 109.47505 * 300.00512 * 16 11 2 30 30 H 1.08999 * 109.47083 * 300.00019 * 17 16 11 31 31 H 1.08995 * 109.47132 * 180.02562 * 17 16 11 32 32 H 1.09006 * 109.47372 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.46864 * 60.00200 * 18 17 16 34 34 H 1.09001 * 109.46919 * 300.00362 * 19 18 17 35 35 H 1.08996 * 109.47505 * 179.97438 * 19 18 17 36 36 H 1.08990 * 109.47030 * 60.00107 * 20 11 2 37 37 H 1.09007 * 109.46791 * 180.02562 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1422 1.2364 -0.4226 5 6 1.5680 2.3232 0.5433 6 7 0.4395 2.2288 1.2142 7 14 2.3866 3.9876 0.3223 8 1 2.4954 4.2973 -1.1260 9 1 1.5715 5.0330 0.9916 10 1 3.7435 3.9559 0.9249 11 6 2.1975 -1.2687 0.0006 12 6 1.9935 -1.9760 -1.3407 13 6 2.4322 -1.0670 -2.4599 14 8 2.8055 0.0558 -2.2151 15 8 2.4085 -1.5048 -3.7285 16 6 3.6882 -0.9968 0.2121 17 6 3.8923 -0.2895 1.5534 18 6 3.3707 -1.1791 2.6836 19 6 1.8800 -1.4510 2.4721 20 6 1.6759 -2.1583 1.1308 21 1 -0.3634 -0.0722 1.0252 22 1 -0.3634 0.9239 -0.4501 23 1 -0.3633 -0.8516 -0.5751 24 1 0.0332 3.0234 1.5942 25 1 0.9389 -2.2221 -1.4649 26 1 2.5852 -2.8911 -1.3626 27 1 2.6995 -0.8858 -4.4120 28 1 4.2333 -1.9407 0.2121 29 1 4.0598 -0.3630 -0.5931 30 1 3.3473 0.6545 1.5530 31 1 4.9543 -0.0954 1.7039 32 1 3.5157 -0.6750 3.6392 33 1 3.9158 -2.1230 2.6840 34 1 1.3350 -0.5070 2.4716 35 1 1.5085 -2.0851 3.2770 36 1 0.6140 -2.3519 0.9801 37 1 2.2213 -3.1021 1.1315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083632470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -87.219843 kcal Electronic energy + Delta-G solvation = -19548.607742 eV Core-core repulsion = 16711.885685 eV Total energy + Delta-G solvation = -2836.722056 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40256 -39.71829 -36.70041 -35.64928 -33.81836 -31.73989 -31.38541 -28.43875 -27.31945 -24.72351 -23.42793 -22.85030 -21.15548 -19.74607 -18.64094 -18.13664 -17.37539 -16.71617 -16.48895 -15.96682 -15.38678 -15.06362 -14.89398 -14.27414 -13.86596 -13.83858 -13.43382 -12.92695 -12.86480 -12.78188 -12.61275 -12.57261 -12.46147 -12.23945 -12.11784 -11.80081 -11.68957 -11.53105 -11.20595 -11.05578 -10.67354 -10.50918 -10.19295 -8.41154 -7.61815 -4.99975 1.44614 1.46779 1.51971 1.65931 2.47038 2.62848 3.51747 3.71154 4.02610 4.09122 4.24520 4.46216 4.55496 4.65694 4.75089 4.78334 4.90716 4.94934 4.99427 5.02790 5.05832 5.12282 5.23046 5.29638 5.43326 5.64728 5.66845 5.68481 5.77106 5.87705 5.95987 6.05470 6.11406 6.62885 7.37017 7.43746 8.12701 8.56097 9.43732 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018637 B = 0.013567 C = 0.010243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.017503 B = 2063.369491 C = 2732.815647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.584 5.584 3 C -0.166 4.166 4 H 0.071 0.929 5 C -0.069 4.069 6 N -0.945 5.945 7 Si 0.936 3.064 8 H -0.295 1.295 9 H -0.302 1.302 10 H -0.282 1.282 11 C 0.201 3.799 12 C -0.122 4.122 13 C 0.465 3.535 14 O -0.508 6.508 15 O -0.528 6.528 16 C -0.101 4.101 17 C -0.132 4.132 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.112 4.112 21 H -0.001 1.001 22 H 0.015 0.985 23 H 0.017 0.983 24 H 0.236 0.764 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.415 0.585 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 -12.338 -3.678 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.306 5.306 3 C -0.297 4.297 4 H 0.088 0.912 5 C -0.261 4.261 6 N -0.596 5.596 7 Si 0.768 3.232 8 H -0.223 1.223 9 H -0.229 1.229 10 H -0.208 1.208 11 C 0.113 3.887 12 C -0.161 4.161 13 C 0.307 3.693 14 O -0.395 6.395 15 O -0.342 6.342 16 C -0.139 4.139 17 C -0.170 4.170 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.151 4.151 21 H 0.017 0.983 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.045 0.955 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.275 0.725 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.406 -12.154 -3.232 13.326 hybrid contribution 0.156 2.128 -0.501 2.191 sum 4.562 -10.027 -3.733 11.631 Atomic orbital electron populations 1.20411 0.83838 0.95850 0.96389 1.43907 1.00822 1.00893 1.84951 1.19171 0.99685 0.86276 1.24610 0.91187 1.25490 0.99380 1.00357 1.00826 1.70145 1.21214 1.26801 1.41400 0.85779 0.77992 0.82732 0.76656 1.22283 1.22931 1.20816 1.19828 0.92366 0.85818 0.90713 1.22049 1.04177 0.98563 0.91330 1.23863 0.74652 0.87394 0.83400 1.90859 1.43077 1.21582 1.83964 1.84494 1.81084 1.50442 1.18133 1.21605 0.94848 0.99746 0.97666 1.21768 0.99117 1.01320 0.94765 1.21362 0.95939 0.99272 0.97248 1.21326 0.96591 0.99927 0.96771 1.21833 1.00640 0.98123 0.94471 0.98254 0.96562 0.96441 0.95473 0.87964 0.85481 0.72483 0.90883 0.92868 0.91185 0.93700 0.93841 0.90976 0.94288 0.92306 0.92739 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 7.65 127.77 0.98 9.66 16 2 N -0.58 -27.17 1.34 -679.57 -0.91 -28.08 16 3 C -0.17 -8.86 4.39 84.03 0.37 -8.49 16 4 H 0.07 3.88 4.95 -2.91 -0.01 3.87 16 5 C -0.07 -3.92 5.05 84.86 0.43 -3.49 16 6 N -0.94 -56.58 10.79 21.65 0.23 -56.35 16 7 Si 0.94 48.05 29.56 68.60 2.03 50.07 16 8 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 9 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 10 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 11 C 0.20 7.25 0.36 3.61 0.00 7.25 16 12 C -0.12 -3.59 4.79 29.85 0.14 -3.45 16 13 C 0.46 15.67 7.83 71.24 0.56 16.22 16 14 O -0.51 -21.89 11.59 21.95 0.25 -21.64 16 15 O -0.53 -13.82 13.42 -51.34 -0.69 -14.51 16 16 C -0.10 -3.63 3.97 30.60 0.12 -3.51 16 17 C -0.13 -5.14 5.48 30.59 0.17 -4.97 16 18 C -0.10 -3.38 5.92 30.60 0.18 -3.20 16 19 C -0.11 -3.89 5.77 30.60 0.18 -3.71 16 20 C -0.11 -3.53 4.46 30.59 0.14 -3.39 16 21 H 0.00 -0.04 7.32 -2.38 -0.02 -0.06 16 22 H 0.02 0.87 6.88 -2.38 -0.02 0.85 16 23 H 0.02 0.71 6.95 -2.39 -0.02 0.70 16 24 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.10 2.87 7.14 -2.39 -0.02 2.86 16 26 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.42 7.85 9.10 -74.06 -0.67 7.17 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.18 4.90 -2.39 -0.01 2.17 16 30 H 0.07 3.44 5.02 -2.39 -0.01 3.43 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.82 7.04 -2.39 -0.02 1.80 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.72 7.48 -2.39 -0.02 1.70 16 37 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -67.49 275.77 4.58 -62.91 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.40 Total: 8.67 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 3.26 Total: -1.08 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -0.67 Total: -84.42 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.43 Total: -36.15 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -67.49 4.58 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.312 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds