Wall clock time and date at job start Mon Mar 30 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 119.99829 * 2 1 4 4 O 1.21280 * 120.00761 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99848 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.48577 * 331.88170 * 5 3 2 7 7 C 1.53050 * 109.49001 * 91.92684 * 5 3 2 8 8 N 1.46953 * 109.36254 * 178.36729 * 7 5 3 9 9 C 1.46958 * 110.88327 * 300.67969 * 8 7 5 10 10 C 1.53050 * 109.36424 * 59.32131 * 9 8 7 11 11 N 1.46960 * 109.38149 * 301.58794 * 10 9 8 12 12 C 1.46898 * 110.99847 * 183.19940 * 11 10 9 13 13 H 1.09008 * 109.46801 * 183.81945 * 12 11 10 14 14 C 1.53003 * 109.47167 * 63.82079 * 12 11 10 15 15 C 1.50702 * 109.47304 * 303.81872 * 12 11 10 16 16 H 1.07998 * 119.99593 * 0.45163 * 15 12 11 17 17 C 1.37868 * 120.00027 * 180.45248 * 15 12 11 18 18 N 1.31513 * 120.00177 * 202.69000 * 17 15 12 19 19 Si 1.86806 * 120.00155 * 22.69128 * 17 15 12 20 20 H 1.48497 * 109.47197 * 92.73018 * 19 17 15 21 21 H 1.48496 * 109.47075 * 212.73110 * 19 17 15 22 22 H 1.48502 * 109.46833 * 332.72845 * 19 17 15 23 23 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46815 * 299.99211 * 1 2 3 25 25 H 1.09004 * 109.47460 * 59.99418 * 1 2 3 26 26 H 0.97003 * 119.99953 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.48823 * 58.39960 * 7 5 3 28 28 H 1.08995 * 109.48720 * 298.34021 * 7 5 3 29 29 H 1.00902 * 110.99874 * 64.54700 * 8 7 5 30 30 H 1.09003 * 109.48800 * 299.35230 * 9 8 7 31 31 H 1.08999 * 109.49005 * 179.28890 * 9 8 7 32 32 H 1.08992 * 109.48866 * 61.56653 * 10 9 8 33 33 H 1.08995 * 109.48623 * 181.61042 * 10 9 8 34 34 H 1.09003 * 109.47042 * 51.76953 * 14 12 11 35 35 H 1.09000 * 109.47098 * 171.76679 * 14 12 11 36 36 H 1.08996 * 109.47058 * 291.76825 * 14 12 11 37 37 H 0.96998 * 120.00448 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0097 0.2608 0.4834 7 6 4.1560 1.2160 -1.4428 8 7 5.6250 1.2554 -1.4389 9 6 6.1156 2.4324 -0.7084 10 6 5.6055 2.3836 0.7337 11 7 4.1364 2.3445 0.7304 12 6 3.6059 2.3735 2.0999 13 1 2.5207 2.2753 2.0713 14 6 3.9807 3.6999 2.7641 15 6 4.1929 1.2325 2.8903 16 1 4.8959 0.5581 2.4241 17 6 3.8325 1.0497 4.2084 18 7 4.6237 0.3827 5.0201 19 14 2.2203 1.7492 4.8416 20 1 1.1554 0.7206 4.7271 21 1 2.3767 2.1434 6.2647 22 1 1.8471 2.9398 4.0363 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.9500 -0.8401 -0.0004 27 1 3.7696 2.1084 -1.9351 28 1 3.8173 0.3293 -1.9784 29 1 6.0085 0.4052 -1.0539 30 1 5.7514 3.3386 -1.1925 31 1 7.2056 2.4324 -0.7088 32 1 5.9919 1.4912 1.2261 33 1 5.9445 3.2702 1.2695 34 1 3.6836 4.5263 2.1183 35 1 3.4672 3.7846 3.7218 36 1 5.0581 3.7339 2.9252 37 1 4.3704 0.2544 5.9476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084212043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:04 Heat of formation + Delta-G solvation = -16.632095 kcal Electronic energy + Delta-G solvation = -18950.666524 eV Core-core repulsion = 16149.298133 eV Total energy + Delta-G solvation = -2801.368391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88132 -37.78321 -34.92918 -34.09862 -32.20662 -30.98850 -29.45880 -26.80631 -25.19521 -24.47584 -23.27208 -20.77789 -20.22701 -19.30998 -17.11856 -16.43269 -15.91966 -15.53810 -15.05166 -14.42381 -14.15320 -14.12623 -13.79860 -13.52944 -12.72860 -12.68632 -12.29008 -12.11911 -12.06983 -11.93020 -11.44737 -11.19970 -10.99812 -10.86481 -10.65581 -10.37736 -10.06537 -9.62672 -9.45546 -9.28817 -8.76189 -8.48688 -8.11144 -7.22063 -6.25548 -4.16072 3.15166 3.22855 3.33073 3.41867 3.58351 4.35932 4.49754 4.75243 5.07502 5.20275 5.42503 5.46880 5.59716 5.68472 5.72650 5.78551 5.82656 5.97283 5.98511 6.25992 6.41686 6.53974 6.64987 6.71895 6.74288 6.76510 7.15113 7.19862 7.23393 7.50493 7.58394 7.78274 8.02301 8.08414 8.33865 8.74027 8.80577 9.46120 10.86736 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.012097 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.288251 B = 2314.127182 C = 3179.114134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.740 5.740 3 C 0.531 3.469 4 O -0.526 6.526 5 C 0.039 3.961 6 H 0.065 0.935 7 C 0.073 3.927 8 N -0.682 5.682 9 C 0.054 3.946 10 C 0.024 3.976 11 N -0.503 5.503 12 C 0.177 3.823 13 H 0.041 0.959 14 C -0.134 4.134 15 C -0.560 4.560 16 H 0.071 0.929 17 C 0.089 3.911 18 N -0.881 5.881 19 Si 0.855 3.145 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.252 1.252 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.400 0.600 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.337 0.663 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 -1.565 -10.254 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.393 5.393 3 C 0.317 3.683 4 O -0.400 6.400 5 C -0.075 4.075 6 H 0.083 0.917 7 C -0.058 4.058 8 N -0.310 5.310 9 C -0.075 4.075 10 C -0.106 4.106 11 N -0.228 5.228 12 C 0.069 3.931 13 H 0.058 0.942 14 C -0.192 4.192 15 C -0.598 4.598 16 H 0.089 0.911 17 C -0.116 4.116 18 N -0.516 5.516 19 Si 0.682 3.318 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.176 1.176 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.233 0.767 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.684 -0.106 -10.945 11.270 hybrid contribution -0.614 -1.270 2.202 2.615 sum -3.298 -1.376 -8.744 9.446 Atomic orbital electron populations 1.21437 0.80377 1.01604 1.01926 1.45830 1.07298 1.08985 1.77196 1.20459 0.89845 0.83259 0.74744 1.90648 1.70194 1.31260 1.47897 1.22208 0.91655 0.96154 0.97499 0.91728 1.22001 0.88139 1.02700 0.92971 1.60882 1.06861 1.06059 1.57170 1.22196 0.98973 0.93899 0.92458 1.22715 0.88901 1.02599 0.96372 1.62444 1.07180 1.35705 1.17490 1.19696 0.95855 0.93820 0.83718 0.94151 1.22047 1.00561 0.97658 0.98933 1.21445 1.28172 1.13570 0.96617 0.91069 1.24821 0.96127 0.94380 0.96278 1.70072 1.34730 1.41818 1.05021 0.87274 0.85689 0.80573 0.78312 1.20762 1.21257 1.17628 0.91125 0.92578 0.92630 0.76707 0.89948 0.90833 0.84583 0.90580 0.90833 0.93366 0.90286 0.94686 0.93792 0.93410 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.70 59.85 0.64 1.84 16 2 N -0.74 -11.37 5.71 -67.07 -0.38 -11.75 16 3 C 0.53 10.24 5.72 -10.98 -0.06 10.18 16 4 O -0.53 -12.03 15.68 5.56 0.09 -11.94 16 5 C 0.04 0.72 2.08 -68.78 -0.14 0.58 16 6 H 0.06 1.25 7.07 -51.93 -0.37 0.88 16 7 C 0.07 1.11 5.99 -3.77 -0.02 1.08 16 8 N -0.68 -9.84 6.91 -113.64 -0.79 -10.63 16 9 C 0.05 0.83 6.72 -3.77 -0.03 0.80 16 10 C 0.02 0.45 4.95 -3.77 -0.02 0.43 16 11 N -0.50 -10.55 4.25 -221.28 -0.94 -11.49 16 12 C 0.18 4.28 1.57 -68.86 -0.11 4.18 16 13 H 0.04 1.08 4.80 -51.92 -0.25 0.83 16 14 C -0.13 -3.12 8.28 37.16 0.31 -2.81 16 15 C -0.56 -14.98 7.56 -34.44 -0.26 -15.24 16 16 H 0.07 2.03 6.05 -52.49 -0.32 1.71 16 17 C 0.09 2.48 5.26 -17.82 -0.09 2.39 16 18 N -0.88 -25.92 13.96 55.43 0.77 -25.14 16 19 Si 0.85 21.50 26.02 -169.99 -4.42 17.07 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.25 -6.30 5.55 56.52 0.31 -5.99 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.40 5.05 8.83 -40.82 -0.36 4.69 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.34 4.57 8.89 -39.29 -0.35 4.22 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.01 6.36 -51.93 -0.33 0.67 16 33 H 0.08 1.51 6.44 -51.93 -0.33 1.18 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 1.04 5.00 -51.93 -0.26 0.78 16 36 H 0.05 1.08 6.83 -51.93 -0.35 0.72 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 284.82 15.07 4.29 4.29 Total: -1.00 -32.10 284.82 -6.69 -38.79 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.53 Total: 7.39 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.21 Total: 3.42 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -1.34 Total: -59.02 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.42 Total: 17.07 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.10 -6.69 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.157 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds