Wall clock time and date at job start Mon Mar 30 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34770 * 119.99829 * 2 1 4 4 O 1.21280 * 120.00761 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99848 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.48577 * 331.88170 * 5 3 2 7 7 C 1.53050 * 109.49001 * 91.92684 * 5 3 2 8 8 N 1.46953 * 109.36254 * 178.36729 * 7 5 3 9 9 C 1.46958 * 110.88327 * 300.67969 * 8 7 5 10 10 C 1.53050 * 109.36424 * 59.32131 * 9 8 7 11 11 N 1.46960 * 109.38149 * 301.58794 * 10 9 8 12 12 C 1.46898 * 110.99847 * 183.19940 * 11 10 9 13 13 H 1.09008 * 109.46801 * 183.81945 * 12 11 10 14 14 C 1.53003 * 109.47167 * 63.82079 * 12 11 10 15 15 C 1.50702 * 109.47304 * 303.81872 * 12 11 10 16 16 H 1.07998 * 119.99593 * 0.45163 * 15 12 11 17 17 C 1.37868 * 120.00027 * 180.45248 * 15 12 11 18 18 N 1.31513 * 120.00177 * 202.69000 * 17 15 12 19 19 Si 1.86806 * 120.00155 * 22.69128 * 17 15 12 20 20 H 1.48497 * 109.47197 * 92.73018 * 19 17 15 21 21 H 1.48496 * 109.47075 * 212.73110 * 19 17 15 22 22 H 1.48502 * 109.46833 * 332.72845 * 19 17 15 23 23 H 1.08998 * 109.47032 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46815 * 299.99211 * 1 2 3 25 25 H 1.09004 * 109.47460 * 59.99418 * 1 2 3 26 26 H 0.97003 * 119.99953 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.48823 * 58.39960 * 7 5 3 28 28 H 1.08995 * 109.48720 * 298.34021 * 7 5 3 29 29 H 1.00902 * 110.99874 * 64.54700 * 8 7 5 30 30 H 1.09003 * 109.48800 * 299.35230 * 9 8 7 31 31 H 1.08999 * 109.49005 * 179.28890 * 9 8 7 32 32 H 1.08992 * 109.48866 * 61.56653 * 10 9 8 33 33 H 1.08995 * 109.48623 * 181.61042 * 10 9 8 34 34 H 1.09003 * 109.47042 * 51.76953 * 14 12 11 35 35 H 1.09000 * 109.47098 * 171.76679 * 14 12 11 36 36 H 1.08996 * 109.47058 * 291.76825 * 14 12 11 37 37 H 0.96998 * 120.00448 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0097 0.2608 0.4834 7 6 4.1560 1.2160 -1.4428 8 7 5.6250 1.2554 -1.4389 9 6 6.1156 2.4324 -0.7084 10 6 5.6055 2.3836 0.7337 11 7 4.1364 2.3445 0.7304 12 6 3.6059 2.3735 2.0999 13 1 2.5207 2.2753 2.0713 14 6 3.9807 3.6999 2.7641 15 6 4.1929 1.2325 2.8903 16 1 4.8959 0.5581 2.4241 17 6 3.8325 1.0497 4.2084 18 7 4.6237 0.3827 5.0201 19 14 2.2203 1.7492 4.8416 20 1 1.1554 0.7206 4.7271 21 1 2.3767 2.1434 6.2647 22 1 1.8471 2.9398 4.0363 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.9500 -0.8401 -0.0004 27 1 3.7696 2.1084 -1.9351 28 1 3.8173 0.3293 -1.9784 29 1 6.0085 0.4052 -1.0539 30 1 5.7514 3.3386 -1.1925 31 1 7.2056 2.4324 -0.7088 32 1 5.9919 1.4912 1.2261 33 1 5.9445 3.2702 1.2695 34 1 3.6836 4.5263 2.1183 35 1 3.4672 3.7846 3.7218 36 1 5.0581 3.7339 2.9252 37 1 4.3704 0.2544 5.9476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084212043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:04 Heat of formation + Delta-G solvation = -44.888121 kcal Electronic energy + Delta-G solvation = -18951.891797 eV Core-core repulsion = 16149.298133 eV Total energy + Delta-G solvation = -2802.593664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38055 -39.25670 -36.58021 -35.49918 -34.20339 -32.41310 -31.18260 -28.05541 -27.21471 -25.98407 -24.64226 -22.26016 -21.81062 -20.94728 -18.91245 -18.14346 -17.45332 -16.84592 -16.58826 -16.14244 -15.79622 -15.61130 -15.12494 -15.03418 -14.67441 -14.25237 -14.10914 -13.63448 -13.47620 -13.10316 -13.07829 -12.87059 -12.79269 -12.51567 -12.17063 -11.96309 -11.95271 -11.52804 -11.46555 -10.83507 -10.63117 -10.08385 -9.44565 -8.93194 -8.43039 -6.34626 1.20765 1.28289 1.39495 1.66537 2.26352 2.29741 2.91290 3.09758 3.40416 3.91841 4.05498 4.21981 4.34703 4.39442 4.42633 4.51499 4.58244 4.61270 4.70332 4.80405 4.84414 4.89999 4.96290 5.04643 5.22577 5.25319 5.38735 5.49834 5.51438 5.90832 6.08148 6.24875 6.33434 6.43042 6.62049 6.67695 7.29541 7.33249 8.72327 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.012097 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.288251 B = 2314.127182 C = 3179.114134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.729 5.729 3 C 0.524 3.476 4 O -0.568 6.568 5 C 0.038 3.962 6 H 0.055 0.945 7 C 0.083 3.917 8 N -0.672 5.672 9 C 0.065 3.935 10 C 0.027 3.973 11 N -0.510 5.510 12 C 0.182 3.818 13 H 0.019 0.981 14 C -0.130 4.130 15 C -0.546 4.546 16 H 0.048 0.952 17 C 0.045 3.955 18 N -0.919 5.919 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.281 1.281 22 H -0.252 1.252 23 H 0.112 0.888 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.414 0.586 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.345 0.655 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 -1.906 -11.656 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.381 5.381 3 C 0.310 3.690 4 O -0.446 6.446 5 C -0.076 4.076 6 H 0.073 0.927 7 C -0.048 4.048 8 N -0.300 5.300 9 C -0.065 4.065 10 C -0.102 4.102 11 N -0.235 5.235 12 C 0.074 3.926 13 H 0.037 0.963 14 C -0.188 4.188 15 C -0.584 4.584 16 H 0.066 0.934 17 C -0.156 4.156 18 N -0.557 5.557 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.176 1.176 23 H 0.131 0.869 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.249 0.751 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.163 0.837 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.985 -0.492 -12.366 12.730 hybrid contribution -0.493 -1.224 2.583 2.900 sum -3.479 -1.716 -9.783 10.524 Atomic orbital electron populations 1.21639 0.78823 1.04151 1.01093 1.45803 1.08445 1.08560 1.75333 1.20650 0.90191 0.83682 0.74470 1.90622 1.70886 1.32860 1.50256 1.22349 0.91578 0.94561 0.99098 0.92727 1.22003 0.88394 1.03730 0.90707 1.60891 1.06312 1.06244 1.56553 1.22160 1.00382 0.94300 0.89643 1.22760 0.87559 1.01038 0.98889 1.62413 1.08388 1.37271 1.15438 1.19498 0.94477 0.93170 0.85451 0.96316 1.21971 1.00533 0.97611 0.98700 1.21580 1.26840 1.13553 0.96474 0.93430 1.25411 0.98324 0.95108 0.96770 1.70147 1.36223 1.43880 1.05496 0.86483 0.82573 0.80011 0.77948 1.20433 1.20715 1.17587 0.86903 0.94792 0.92094 0.75057 0.90883 0.87771 0.83697 0.90449 0.88271 0.95821 0.90969 0.93408 0.94569 0.93268 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 10.70 127.77 1.37 3.49 16 2 N -0.73 -21.21 5.71 -484.52 -2.77 -23.98 16 3 C 0.52 19.78 5.72 87.66 0.50 20.28 16 4 O -0.57 -25.89 15.68 -3.03 -0.05 -25.94 16 5 C 0.04 1.38 2.08 44.17 0.09 1.47 16 6 H 0.05 2.08 7.07 -2.39 -0.02 2.07 16 7 C 0.08 2.33 5.99 86.31 0.52 2.85 16 8 N -0.67 -17.68 6.91 -513.44 -3.55 -21.23 16 9 C 0.07 1.83 6.72 86.31 0.58 2.41 16 10 C 0.03 1.00 4.95 86.31 0.43 1.43 16 11 N -0.51 -21.20 4.25 -854.00 -3.63 -24.82 16 12 C 0.18 8.85 1.57 44.17 0.07 8.92 16 13 H 0.02 1.01 4.80 -2.38 -0.01 1.00 16 14 C -0.13 -6.02 8.28 71.98 0.60 -5.42 16 15 C -0.55 -29.50 7.56 25.60 0.19 -29.31 16 16 H 0.05 2.77 6.05 -2.91 -0.02 2.75 16 17 C 0.05 2.53 5.26 84.65 0.44 2.98 16 18 N -0.92 -54.67 13.96 21.44 0.30 -54.37 16 19 Si 0.90 44.48 26.02 68.60 1.78 46.27 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 22 H -0.25 -12.30 5.55 99.48 0.55 -11.75 16 23 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.41 9.59 8.83 -92.71 -0.82 8.77 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.35 8.48 8.89 -89.69 -0.80 7.68 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.02 0.99 6.36 -2.39 -0.02 0.97 16 33 H 0.07 2.73 6.44 -2.39 -0.02 2.71 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.69 5.00 -2.39 -0.01 1.68 16 36 H 0.05 2.21 6.83 -2.39 -0.02 2.19 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.23 284.82 -3.80 -73.03 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.68 Total: 21.94 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.79 Total: 9.11 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -9.65 Total: -124.41 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.78 Total: 46.27 kcal Total: -69.23 -3.80 -73.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds